The Arabidopsis V-ATPase is localized to the TGN/EE via a seed plant specific motif

Abstract

The V-ATPase is a versatile proton-pump found in a range of endomembrane compartments yet the mechanisms governing its differential targeting remain to be determined. In Arabidopsis, VHA-a1 targets the V-ATPase to the TGN/EE whereas VHA-a2 and VHA-a3 are localized to the tonoplast. We report here that the VHA-a1 targeting domain serves as both an ER-exit and as a TGN/EE-retention motif and is conserved among seed plants. In contrast, Marchantia encodes a single VHA-isoform that localizes to the TGN/EE and the tonoplast in Arabidopsis. Analysis of CRISPR/Cas9 generated null alleles revealed that VHA-a1 has an essential for male gametophyte development but acts redundantly with the tonoplast isoforms during vegetative growth. We propose that in the absence of VHA-a1, VHA-a3 is partially re-routed to the TGN/EE. Our findings contribute to understanding the evolutionary origin of V-ATPase targeting and provide a striking example that differential localization does not preclude functional redundancy.

Data availability

All data generated or analysed during this study are included in the manuscript and supporting files. Source data is provided for Figures 2,4B, 5B, 7B and C, 8C and D, 10A, Supplemental Figure 8B, Supplemental Figure 9 and Supplemental Figure 15A.

The following previously published data sets were used

Article and author information

Author details

  1. Upendo Lupanga

    Department of Cell Biology, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany
    Competing interests
    The authors declare that no competing interests exist.
  2. Rachel Röhrich

    Department of Cell Biology, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany
    Competing interests
    The authors declare that no competing interests exist.
  3. Jana Askani

    Department of Cell Biology, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-1390-7344
  4. Stefan Hilmer

    Electron Microscopy Core Facility, Heidelberg University, Heidelberg University, Heidelberg, Germany
    Competing interests
    The authors declare that no competing interests exist.
  5. Christiane Kiefer

    Dep. Biodiversity and Plant Systematics, Centre fOrganismal Studies, Heidelberg University, Heidelberg University, Heidelberg, Germany
    Competing interests
    The authors declare that no competing interests exist.
  6. Melanie Krebs

    Department of Cell Biology, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany
    Competing interests
    The authors declare that no competing interests exist.
  7. Takehiko Kanazawa

    Division of Cellular Dynamics, National Institute for Basic Biology, Okazaki, Japan
    Competing interests
    The authors declare that no competing interests exist.
  8. Takashi Ueda

    Division of Cellular Dynamics, National Institute for Basic Biology, Okazaki, Japan
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-5190-892X
  9. Karin Schumacher

    Department of Cell Biology, Centre for Organismal Studies (COS), Heidelberg University, Heidelberg, Germany
    For correspondence
    karin.schumacher@cos.uni-heidelberg.de
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-6484-8105

Funding

DFG (SFB1101 TPA02)

  • Karin Schumacher

Grants-in-Aid for Scientific Research (19H05675,18H0247,18K14738)

  • Takehiko Kanazawa
  • Takashi Ueda

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Heather E McFarlane, University of Toronto, Canada

Version history

  1. Received: July 3, 2020
  2. Accepted: November 24, 2020
  3. Accepted Manuscript published: November 25, 2020 (version 1)
  4. Version of Record published: December 4, 2020 (version 2)

Copyright

© 2020, Lupanga et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 2,922
    views
  • 480
    downloads
  • 24
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Upendo Lupanga
  2. Rachel Röhrich
  3. Jana Askani
  4. Stefan Hilmer
  5. Christiane Kiefer
  6. Melanie Krebs
  7. Takehiko Kanazawa
  8. Takashi Ueda
  9. Karin Schumacher
(2020)
The Arabidopsis V-ATPase is localized to the TGN/EE via a seed plant specific motif
eLife 9:e60568.
https://doi.org/10.7554/eLife.60568

Share this article

https://doi.org/10.7554/eLife.60568

Further reading

    1. Plant Biology
    Zhao-Ying Zeng, Jun-Rong Huang ... Han-Bo Zhang
    Research Article

    Microbes strongly affect invasive plant growth. However, how phyllosphere and rhizosphere soil microbes distinctively affect seedling mortality and growth of invaders across ontogeny under varying soil nutrient levels remains unclear. In this study, we used the invader Ageratina adenophora to evaluate these effects. We found that higher proportions of potential pathogens were detected in core microbial taxa in leaf litter than rhizosphere soil and thus leaf inoculation had more adverse effects on seed germination and seedling survival than soil inoculation. Microbial inoculation at different growth stages altered the microbial community and functions of seedlings, and earlier inoculation had a more adverse effect on seedling survival and growth. The soil nutrient level did not affect microbe-mediated seedling growth and the relative abundance of the microbial community and functions involved in seedling growth. The effects of some microbial genera on seedling survival are distinct from those on growth. Moreover, the A. adenophora seedling-killing effects of fungal strains isolated from dead seedlings by non-sterile leaf inoculation exhibited significant phylogenetic signals, by which strains of Allophoma and Alternaria generally caused high seedling mortality. Our study stresses the essential role of A. adenophora litter microbes in population establishment by regulating seedling density and growth.

    1. Plant Biology
    Vilde Olsson Lalun, Maike Breiden ... Melinka A Butenko
    Research Article

    The abscission of floral organs and emergence of lateral roots in Arabidopsis is regulated by the peptide ligand inflorescence deficient in abscission (IDA) and the receptor protein kinases HAESA (HAE) and HAESA-like 2 (HSL2). During these cell separation processes, the plant induces defense-associated genes to protect against pathogen invasion. However, the molecular coordination between abscission and immunity has not been thoroughly explored. Here, we show that IDA induces a release of cytosolic calcium ions (Ca2+) and apoplastic production of reactive oxygen species, which are signatures of early defense responses. In addition, we find that IDA promotes late defense responses by the transcriptional upregulation of genes known to be involved in immunity. When comparing the IDA induced early immune responses to known immune responses, such as those elicited by flagellin22 treatment, we observe both similarities and differences. We propose a molecular mechanism by which IDA promotes signatures of an immune response in cells destined for separation to guard them from pathogen attack.