Antibody | Anti-PAR (Mouse monoclonal) | Trevigen | Cat# 4335-MC-100, RRID:AB_2572318 | IB (1:3000) |
Antibody | Anti-PARP1 (Rabbit polyclonal) | Cell Signaling Technology | Cat# 9542, RRID:AB_2160739 | IB (1:1000) |
Antibody | Anti-γH2AX (Rabbit monoclonal) | Cell Signaling Technology | Cat# 9718, RRID:AB_2118009 | IB (1:3000) |
Antibody | Anti-Histone H3 (Rabbit monoclonal) | Cell Signaling Technology | Cat# 4499, RRID:AB_10544537 | IB (1:3000) |
Antibody | Anti-GAPDH (Mouse monoclonal) | Santa Cruz Biotechnology | Cat# sc-32233, RRID:AB_627679 | IB (1:5000) |
Antibody | Anti-Phospho-TBK1/NAK (pS172 TBK1) (Rabbit monoclonal) | Cell Signaling Technology | Cat# 5483, RRID:AB_10693472 | IB (1:1000) |
Antibody | Anti-TBK1/NAK (Rabbit monoclonal) | Cell Signaling Technology | Cat# 3504, RRID:AB_2255663 | IB (1:1000) |
Antibody | Anti-Flag (Rabbit polyclonal) | MilliporeSigma | Cat# F7425, RRID:AB_439687 | IB (1:1000) |
Antibody | Anti-cGAS (Rabbit monoclonal) | Cell Signaling Technology | Cat# 15102, RRID:AB_2732795 | IB (1:1000) |
Antibody | Anti-Phospho-IRF-3 (pS396 IRF3) (Rabbit monoclonal) | Cell Signaling Technology | Cat# 4947, RRID:AB_823547 | IF (1:1000) |
Antibody | Alexa Fluor 488-conjugated goat anti-rabbit IgG (Goat polyclonal) | Thermo Fisher Scientific | Cat# A32731, RRID:AB_2633280 | IF (1:1000) |
Antibody | Goat Anti-Mouse IgG Antibody, HRP conjugate, Species Adsorbed (Goat polyclonal) | MilliporeSigma | Cat# AP181P, RRID:AB_11214094 | IB (1:3000) |
Antibody | ECL Rabbit IgG, HRP-linked fragment (Donkey polyclonal) | GE Healthcare life sciences | Cat# NA9340, RRID:AB_772191 | IB (1:3000) |
Chemical compound, drug | Talazoparib | Selleck | Cat# S7048 | PARP1 inhibitor |
Chemical compound, drug | Niraparib | Selleck | Cat# S2741 | PARP1 inhibitor |
Chemical compound, drug | Rucaparib | Selleck | Cat# S1098 | PARP1 inhibitor |
Chemical compound, drug | Olaparib | Selleck | Cat# S1060 | PARP1 inhibitor |
Chemical compound, drug | Veliparib | Selleck | Cat# S1004 | PARP1 inhibitor |
Chemical compound, drug | iRucaparib-AP6 | Our laboratory | N/A | PARP1 degrader |
Chemical compound, drug | Polybrene (Hexadimethrine bromide) | MilliporeSigma | Cat# H9268; CAS 28728-55-4 | |
Chemical compound, drug | Puromycin | MilliporeSigma | Cat# P7255; CAS 58-58-2 | |
Cell line (human) | HeLa | ATCC | Cat# CCL-2, RRID:CVCL_0030 | |
Cell line (human) | HeLa PARP1 KO | In this study | N/A | PARP1 deficient HeLa |
Cell line (human) | MHH-ES-1 | DSMZ | Cat# ACC 167, RRID:CVCL_1411 | |
Cell line (human) | HeLa | ATCC | Cat# CCL-2 | |
Recombinant DNA reagent | pCMV-hPARP1-3xFlag-WT | Addgene | Cat# 11157 | In pCMV; tagged with 3XFlag on its N-terminus |
Recombinant DNA reagent | pCMV-hPARP1-3xFlag-R138C | In this study | Modified by R138C mutation | In pCMV; tagged with 3XFlag on its N-terminus |
Strain, strain background (Escherichia coli) | DH5alpha | Thermo Fisher Scientific | Cat# 18258012 | Competent cells |
Strain, strain background (Escherichia coli) | Stbl3 Competent E. coli | Thermo Fisher Scientific | Cat# C737303 | Competent cells |
Commercial assay or kit | Quant-iT PicoGreen dsDNA Reagent | Thermo Fisher Scientific | Cat# P7581 | |
Commercial assay or kit | Subcellular Protein Fractionation Kit for Cultured Cells | Thermo Fisher Scientific | Cat# 78840 | |
Commercial assay or kit | RNeasy Mini Kit | QIAGEN | Cat# 74104 | |
Commercial assay or kit | QIAprep Spin Miniprep Kit | QIAGEN | Cat# 27106 | |
Commercial assay or kit | e-Myco PLUS Mycoplasma PCR Detection Kit | BOCA SCIENTIFIC | Cat# 25237 | |
Commercial assay or kit | TMT6plex Mass Tag Labeling Kits | Thermo Fisher Scientific | Cat# 90110 | |
Commercial assay or kit | CellTiter-Glo Luminescent Cell Viability Assay | Promega | Cat# G7571 | |
Software, algorithm | ImageJ 1.49 v | NIH | https://imagej.net/ImageJ2 | |
Software, algorithm | DAVID Bioinformatics Resources v6.8 | DAVID | https://david.ncifcrf.gov/ | |
Software, algorithm | PRISM v8.2.0 | GraphPad | https://www.graphpad.com/scientific-software/prism/ | |
Software, algorithm | human protein sequences (Uniprot) | UniProt | https://www.uniprot.org/UniProt database (2019_07,560,537 sequences;taxonomy, Homo sapiens, 20,431 ) | |
Software, algorithm | human IPI protein database v3.60 | EMBL-EBI | ftp://ftp.ebi.ac.uk/pub/databases/IPI | |
Software, algorithm | The Sequest algorithm v28 | Cell. 2010 Dec 3;143(7):1174–89 | N/A | |
Others | DAPI | MilliporeSigma | Cat# D9542 | |
Others | Dimethyl sulfoxide (DMSO) | Thermo Fisher Scientific | Cat# BP231-1; CAS 67-68-5 | |
Others | Lipofectamine 2000 | Thermo Fisher Scientific | Cat# 11668500 | |
Others | Dulbecco’s Modified Eagle’s Medium (DMEM) | MilliporeSigma | Cat# D5796 | |
Others | RPMI1640 | MilliporeSigma | Cat# R8758 | |
Others | Fetal Bovine Serum (FBS) | MilliporeSigma | Cat# 12303C | |
Others | Lysyl Endopeptidase (Lys-C) | Wako | Cat# 129–02541; CAS 123175-82-6 | |
Others | Gen5 | BioTek | N/A | |
Others | BCA reagents | Thermo Fisher Scientific | Cat# 23224/23228 | |
Others | 0.45 μm filter | Thermo Fisher Scientific | Cat# 05-713-387 | |
Others | Synergy HT Multi-Detection Microplate Reader. | BioTek | N/A | |
Others | SuperScript III Reverse Transcriptase | Thermo Fisher Scientific | Cat# 18080044 | |
Others | CFX384 Touch Real-Time PCR Detection System | Bio-Rad | Cat# 1855484 | |
Others | Applied Biosystems Power SYBR Green PCR Master Mix | Thermo Fisher Scientific | Cat# 43-676-59 | |
Others | Oasis HLB solid-phase extraction (SPE) cartridges | Waters | Cat# 186000383 | |
Others | 3M Empore C18 Extraction Disk | Thermo Fisher Scientific | Cat# 14-386-2 | |
Others | ZORBAX 300Extend-C18 HPLC column | Agilent | Cat# 761775–902 | |
Others | Q Exactive Hybrid Quadrupole-Orbitrap Mass Spectrometer | Thermo Fisher Scientific | Cat# IQLAAEGAAPFALGMAZR | |
Others | PicoFrit nanospray columns | New Objective | PF360-75-15-N-5 | |