Gene (Danio rerio) | gjd1a | ZFIN | ZDB-GENE-080723–77 | |
Gene (Danio rerio) | gjd1b | ZFIN | ZDB-GENE-100921–89 | |
Gene (Danio rerio) | gjd2a | ZFIN | ZDB-GENE-111020–17 | |
Gene (Danio rerio) | gjd2b | ZFIN | ZDB-GENE-030911–1 | |
Gene (Danio rerio) | tjp1a | ZFIN | ZDB-GENE-031001–2 | |
Gene (Danio rerio) | tjp1b | ZFIN | ZDB-GENE-070925–1 | |
Strain, strain background (Danio rerio) | AB x Tübingen | University of Oregon fish facility | ZFIN: ZDB-GENO-010924–10; PubMed: PMC4667794 | |
Strain, strain background (Danio rerio) | M/CoLo:GFP (zf206Et) | Satou et al., 2009 | ZFIN: ZDB-ALT-110217–6; PubMed: 19474306 | |
Strain, strain background (Danio rerio) | tjp1bΔ16bp (fh448) | Shah et al., 2015 | ZFIN: ZDB-ALT-160825–6; PubMed: PMC4667794 | |
Strain, strain background (Danio rerio) | tjp1aΔ2bp (fh463) | Marsh et al., 2017 | ZFIN: ZDB-ALT-180920–6; Pubmed: PMC5698123 | |
Strain, strain background (Danio rerio) | gjd1adis3 (fh360) | Miller et al., 2017 | ZFIN: ZDB-ALT-160825–2: Pubmed: PMC5462537 | |
Strain, strain background (Danio rerio) | gjd2a∆5bp (fh437) | Shah et al., 2015 | ZFIN: ZDB-TALEN-170822–4; Pubmed: PMC4667794 | |
Strain, strain background (Danio rerio) | gjd1a ∆8bp (fh436) | Shah et al., 2015 | ZFIN: ZDB-TALEN-170822–3; Pubmed: PMC4667794 | |
Strain, strain background (Danio rerio) | V5-tjp1b (b1406) | This paper | N/A | See Materials and methods |
Strain, strain background (Homo sapiens) | HEK293T/17 cells | ATCC | CRL-11268 | |
Strain, strain background (Escherichia coli) | BL21(DE3) | New England BioLabs | C2527I | |
Strain, strain background (Escherichia coli) | DH5alpha | Zymo Research | T3009 | |
Antibody | Chicken monoclonal anti-GFP IgY | Abcam | ab13970; RRID:AB_300798 | (1:500) |
Antibody | Rabbit monoclonal anti-GFP | Abcam | Ab290 | (1:1000) |
Antibody | Mouse monoclonal IgG1 anti-ZO1 | ThermoFisher | 33–9100; RRID: AB_2533147 | (1:350) |
Antibody | Rabbit monoclonal anti-Cx35.5 | Miller et al., 2015 | clone 12H5 | (1:800) |
Antibody | Rabbit monoclonal anti-Cx35.5-IRDye 680LT conjugated | Fred Hutch Antibody Technology Facility, Miller lab conjugated | clone 12H5 | (1:1000) |
Antibody | Mouse monoclonal IgG1 anti-Cx35.5 | Miller et al., 2015 | clone 4B12a | (1:1000) |
Antibody | Rabbit monoclonal anti-Cx34.1 | Miller et al., 2015 | clone 3A4 | (supernatant) |
Antibody | Rabbit monoclonal anti-Cx34.1-680LT conjugated | Fred Hutch Antibody Technology Facility, Miller lab conjugated | clone 3A4 | (supernatant) |
Antibody | Mouse monoclonal IgG2A anti-Cx34.1 | Miller et al., 2015 | clone 5C10A | (1:200) |
Antibody | Rabbit monoclonal anti -GluR2/3 | Millipore Sigma | 07–598; RRID:AB_11213931 | (1:250) |
Antibody | Rabbit monoclonal anti-TEV Cleavage Site | Invitrogen | PA1-119; RRID: AB_2539888 | (1:2000) |
Antibody | Goat monoclonal anti-rabbit Alexa 405 | Invitrogen | A31556; RRID:AB_221605 | (1:500) |
Antibody | Donkey monoclonal anti-chicken IgGY Alexa 488 | Jackson Immuno Research Laboratories | 703-545-155 | (1:500) |
Antibody | Goat monoclonal anti-mouse IgG2a Alexa 555 | Invitrogen | A21137 | (1:500) |
Antibody | Goat monoclonal anti-mouse IgG1 Alexa 633 | Invitrogen | A21126 | (1:500) |
Antibody | Mouse monoclonal IgG2a anti-V5 peptide | Invitrogen | R960-25 | (1:1000) |
Antibody | ChromPure mouse monoclonal IgG, whole molecule | Jackson ImmunoResearch Laboratories | 015-000-003; RRID: AB_2337188 | (1:1000) |
Antibody | IRDye 680LT goat monoclonal anti-rabbit secondary | LI-COR | 925–68021; RRID: AB_2713919 | (1:10000) |
Antibody | IRDye 800CW goat monoclonal anti-mouse secondary | LI-COR | 925–32210; RRID: AB_2687825 | (1:10000) |
Antibody | Mouse monoclonal IgG kappa binding protein (m-IgGκ BP) conjugated to CruzFluor 790 (CFL 790) secondary | Santa Cruz Biotechnology | sc-516181 | (1:10000) |
Recombinant DNA reagent | pCMV mammalian expression plasmid | J. O’Brien lab | N/A | |
Recombinant DNA reagent | pGEX bacterial expression plasmid | K. Prehoda lab | N/A | |
Recombinant DNA reagent | pBH bacterial expression plasmid | K. Prehoda lab | N/A | |
Sequence-based reagent | tjp1bΔ16bp genotyping primers: Fwd, TCTCTTTCCTTCTTTCTGTGTGTTT; Rev, AAAAGTGAAATTCTCACCCTGTG | Marsh et al., 2017 | N/A | |
Sequence-based reagent | gjd2a∆5bp genotyping primers: Fwd, GATGAGCAGCGATGGGAGAAT; Rev, CTTGAATTTCGGCGTCAGACAG | Miller et al., 2015 | N/A | |
Sequence-based reagent | gjd1a ∆8bp genotyping primers: Fwd, CTCAGGCTGAAGGTCGGCAGGGAAG; Rev, GCTGTACCGCAGCCTCCAGCAAC | Miller et al., 2015 | N/A | |
Sequence-based reagent | gjd1adis3 genotyping primers: Fwd, AGTGCGACCGCTACCCTTGC; Rev, AGCACCACGCAGATTCCGCT, | Miller et al., 2015 | N/A | |
Sequence-based reagent | tjp1aΔ2bp genotyping primers: Fwd, GTACAACAATGGAGGAAACTGTCA; Rev, AAAGAAGCTATGTTCAACACTCACC | Marsh et al., 2017 | N/A | |
Sequence-based reagent | tjp1b N-terminus Crispr target: GGATTTCTGGTAATTCACCA | This paper | N/A | See Materials and Methods |
Sequence-based reagent | tjp1b N-terminus oligo: GAGCCAGCTGCATAACAGTAATGTATTTCTGGTAATTCACTCCGCCTCCACCTCCGGTGCTATCCAGGCCCAGCAGCGGGTTCGGAATCGGTTTGCCTCTAGACATGGTACTGTTCACCGCTTTTTTGAAACACAAAAATCCGCA | This paper | N/A | See Materials and Methods |
Sequence-based reagent | V5-tjp1b screening primers: Fwd, GGGAGTAGGAGGAGAAGGA; Rev, GTTTTCTGGGAGGCAGGCTA | This paper | N/A | See Materials and Methods |
Peptide, recombinant protein | GST-Cx34.1 (aa 256–299) | This paper | GST-Cx34.1-tail wt | See Materials and Methods |
Peptide, recombinant protein | GST-Cx34.1 (aa 256–295) | This paper | GST- Cx34.1-tail ∆PBM | See Materials and Methods |
Peptide, recombinant protein | GST-Cx35.5 (aa 267–309) | This paper | GST-Cx35.5-tail wt | See Materials and Methods |
Peptide, recombinant protein | GST-Cx35.5 (aa 267–305) | This paper | GST- Cx35.5-tail ∆PBM | See Materials and Methods |
Peptide, recombinant protein | 6xHIS-TEV cleavage site-ZO1b (aa105-207) | This paper | ZO1b PDZ1 | See Materials and Methods |
Peptide, recombinant protein | 6xHIS-TEV cleavage site-ZO1b (aa 298–387) | This paper | ZO1b PDZ2 | See Materials and Methods |
Peptide, recombinant protein | mVenus-ZO1b (aa 2–1778)−8xHIS | This paper | mVenus-ZO1b | See Materials and Methods |
Peptide, recombinant protein | Cx34.1 (aa 1–299) | This paper | Cx34.1-FL | See Materials and Methods |
Peptide, recombinant protein | Cx34.1 (aa 1–295) | This paper | Cx34.1-∆PBM | See Materials and Methods |
Peptide, recombinant protein | Cx35.5 (aa 1–309) | This paper | Cx35.5-FL | See Materials and Methods |
Peptide, recombinant protein | Cx35.5 (aa 1–305) | This paper | Cx35.5-∆PBM | See Materials and Methods |
Commercial assay or kit | Taq 2X Master Mix | NEB | M0270L | |
Commercial assay or kit | Universal Mycoplasma Detection Kit | ATCC | 30–1012K | |
Chemical compound, drug | ProLong Gold antifade reagent | ThermoFisher | P36930 | |
Chemical compound, drug | n-Octyl-β-D-Glucopyranoside, Anagrade | Anatrace | O311 | |
Chemical compound, drug | Protease Inhibitor Mini Tablets, EDTA-free | Pierce | A32955 | |
Chemical compound, drug | Lipofectamine 3000 | Invitrogen | L3000008 | |
Chemical compound, drug | Dulbecco's Modified Eagle's Medium (DMEM) | ATCC | 30–2002 | |
Chemical compound, drug | Opti-MEM | Gibco | 31-985-062 | |
Chemical compound, drug | Glutathione resin | Pierce | PI16100 | |
Chemical compound, drug | His60 Ni Superflow resin | TaKaRa | 635659 | |
Chemical compound, drug | Protein A/G Agarose | Pierce | PI20421 | |
Chemical compound, drug | 4–15% Criterion TGX Stain-Free Protein Gel | BioRad | 5678083 | |
Chemical compound, drug | 4–20% Mini-PROTEAN TGX Stain-Free Protein Gels | BioRad | 4568095 | |
Chemical compound, drug | (+)-Tubocurarine chloride pentahydrate | Sigma | 93750 | |
Chemical compound, drug | Ethyl 3-aminobenzoate methanesulfonate salt | Sigma | A5040 | |
Chemical compound, drug | Sodium chloride | Sigma | 567440 | |
Chemical compound, drug | Potassium chloride | Sigma | P3911 | |
Chemical compound, drug | Calcium chloride | Sigma | 21115 | |
Chemical compound, drug | Magnesium chloride | Sigma | M1028 | |
Chemical compound, drug | HEPES | Sigma | H3375 | |
Chemical compound, drug | D-(+)-Glucose | Sigma | G8270 | |
Chemical compound, drug | Sodium hydroxide | Sigma | S5881 | |
Chemical compound, drug | Potassium methanesulfonate | Sigma | 83000 | |
Chemical compound, drug | EGTA | Sigma | E3889 | |
Chemical compound, drug | Adenosine 5′-phosphosulfate sodium salt | Sigma | A5508 | |
Chemical compound, drug | Guanosine 5′-triphosphate tris salt | Sigma | G9002 | |
Chemical compound, drug | Creatine Phosphate, Dipotassium Salt | Sigma | 237911 | |
Chemical compound, drug | D-Mannitol | Sigma | M4125 | |
Chemical compound, drug | Potassium Hydroxide | Sigma | P5958 | |
Chemical compound, drug | Meclofenamic acid sodium salt | Sigma | M4531 | |
Chemical compound, drug | Dimethyl sulfoxide | Sigma | D8418 | |
Chemical compound, drug | CNQX | Tocris | 0190 | |
Chemical compound, drug | DAP-5 | Tocris | 0106 | |
Chemical compound, drug | Capillary Glass 1.5 mm OD, 1.12 mm ID | WPI | TW150F-3 | |
Chemical compound, drug | SYLGARD 184 Silicone Elastomer Kit | DOW | https://www.dow.com/en-us/pdp.sylgard-184-silicone-elastomer-kit.01064291z.html | |
Software, algorithm | GraphPad Prism | Graph Pad Software | https://www.graphpad.com/ | |
Software, algorithm | Adobe Photoshop CC 2015 | Adobe | https://www.adobe.com/ | |
Software, algorithm | Adobe Illustrator CC 2015 | Adobe | https://www.adobe.com/ | |
Software, algorithm | scikit-image | van der Walt et al., 2014 | https://peerj.com/articles/453/ | |
Software, algorithm | SciPy | Virtanen et al., 2020 | https://www.nature.com/articles/s41592-019-0686-2?luicode=10000011&lfid=1008082086c7dfebc09fc300733002ea997ba2_-_feed&u=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41592-019-0686-2 | |
Software, algorithm | FiJi | Schindelin et al., 2012 | PubMed: 22743772; https://fiji.sc/ | |
Software, algorithm | OriginPro | OriginLab Corp. | https://www.originlab.com/ | |
Software, algorithm | Clampex | Molecular Devices | | |
Other | Leica TCS SP8 Confocal | Leica | http://www.leica-microsystems.com/products/confocal-microscopes/details/product/leica-tcs-sp8/ | |
Other | 40X/1.10 Water Objective | Leica | 11506357 | |
Other | 63X/1.40 Oil Objective | Leica | 15506350 | |
Other | Amicon Ultra-0.5 Centrifugal Filter Units, 10K MWCO | MilliporeSigma | UFC501008 | |
Other | Amicon Ultra-4 Centrifugal Filter Units 10 kDa MWCO | MilliporeSigma | UFC801008 | |
Other | Upright Axio Examiner Microscope | Carl Zeiss Microscopy, LLC | https://www.zeiss.com/corporate/int/home.html?vaURL=www.zeiss.de/en | |
Other | 20X/0.5 W-N-Achroplan | Carl Zeiss Microscopy, LLC | 420957–9900 | |
Other | 40X/1.0 VIS-IR W-Plan-Apochromatic | Carl Zeiss Microscopy | 421462–9900 | |
Other | Multiclamp 700B amplifier | Molecular Devices | https://www.moleculardevices.com/ | |
Other | Digidata 1440A | Molecular Devices | https://www.moleculardevices.com/ | |