1. Genetics and Genomics
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Repurposing eflornithine to treat a patient with a rare ODC1 gain-of-function variant disease

  1. Surender Rajasekaran  Is a corresponding author
  2. Caleb P Bupp
  3. Mara Leimanis-Laurens
  4. Ankit Shukla
  5. Christopher Russell
  6. Joseph Junewick
  7. Emily Gleason
  8. Elizabeth A VanSickle
  9. Yvonne Edgerly
  10. Bryan M Wittmann
  11. Jeremy W Prokop
  12. André S Bachmann  Is a corresponding author
  1. Pediatric Critical Care Medicine, Helen DeVos Children’s Hospital, United States
  2. Spectrum Health Office of Research and Education, United States
  3. Department of Pediatrics and Human Development, College of Human Medicine, Michigan State University, United States
  4. Medical Genetics, Spectrum Health and Helen DeVos Children’s Hospital, United States
  5. Department of Pharmacy, Helen DeVos Children’s Hospital, United States
  6. Department of Diagnostic Radiology, Spectrum Health and Helen DeVos Children's Hospital, United States
  7. Metabolon, United States
  8. Department of Pharmacology and Toxicology, College of Human Medicine, Michigan State University, United States
Short Report
Cite this article as: eLife 2021;10:e67097 doi: 10.7554/eLife.67097
2 figures, 1 video, 1 table and 2 additional files

Figures

Patient phenotypes and metabolites before and after eflornithine treatment.

Panel A shows the timeline of events for the patient with milestones marked on the top and clinical observations below. Panels B-C show hair growth and muscle tone are the most noticeable phenotype changes with treatment. Follicular cysts recurred on back, neck, and posterior scalp (bottom left images). First hair growth was eyebrows 1 month into treatment (bottom right images). Panel D shows MRI before and after eflornithine treatment. Neonatal: Axial T1 (TR 483 ms, TE 9 ms, and flip angle 63 degrees), T2 (TR 3250 ms, TE 220 ms, and flip angle 90 degrees), and T2-FLAIR (TR 8002 ms, TE 122 ms, and flip angle 90 degrees) show marked abnormal signal of cerebral white matter (*) and several subependymal cysts (arrows). Five years of age: Axial T1 (TR 809 ms, TE 16 ms, and flip angle 111 degrees), T2 (TR 4850 ms, TE 107 ms, and flip angle 142 degrees), and T2-FLAIR (TR 6002 ms, TE 91 ms, and flip angle 90 degrees) show decrease in cerebral white matter volume, but normalization of signal and resolution of subependymal cysts.

ODC1/ODC clinical variant c.1342 A > T/ p.K448X and support for eflornithine treatment.

Panel A shows the gene structure for ODC1 (ornithine decarboxylase 1) with active site amino acids labeled in blue and the last exon identified. In the last exon cluster, a mouse model variant and four different patient variants including our patient’s K448X variant are described (Panel B, red). The patient variant falls on the disordered C-terminus of ODC, where the two active sites are composed of amino acids from each of two ODC proteins forming a dimer (Panel C). The patient with K448X variant displays alterations of metabolic pathways (Panel D) including polyamines (triangle), urea (square), and others (circle). Metabolites measured are marked in cyan and those altered by K448X with red arrows based on direction of changes seen in the patient. Panel E shows changes in metabolite levels during treatment with eflornithine, with elevated levels of N-acetylputrescine and acisoga decreasing on therapy.

Videos

Video 1
Treatment progression after 4 months of eflornithine therapy.

Tables

Key resources table
Reagent type
(species) or
resource
DesignationSource or
reference
IdentifiersAdditional
information
Gene (Homo sapiens)ODC1NCBI GeneGene ID: 4953https://www.ncbi.nlm.nih.gov/gene/4953
Chemical compound, drugEflornithine (DFMO)Sanofi Aventis Supplied for studyhttps://pubchem.ncbi.nlm.nih.gov/compound/Eflornithine
Biological sample (Homo sapiens)Blood EDTA tubesFreshly isolated blood from patient
Software, algorithmYASARAYASARAhttp://www.yasara.org/Protein modelling
Commercial assay or kitLiquid chromatography paired massspectrometryMetabolon, Morrisville, NChttps://www.metabolon.com/

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