IUCN assessments based on data from AmphibiaWeb. Inclusion as a traded species based on appearance in online searches (2004–2019 and 2020 online contemporary sample), Law Enforcement Management …
Also see Figure 2—figure supplements 1, 2, 3, and 4 for patterns of individual countries and inventories.
(A) The number of amphibian species present in a country. (B) The number of species present in that country and also present in the trade. (C) The % of species found in a country that are traded.
Redlist status and Convention on International Trade in Endangered Species (CITES) listing in trade.
(A) Trends over time of Online, LEMIS, and CITES datasets: (1) Raw counts of numbers of species detected in each year. (2) The number of species traded only in a particular year. (B) Exploration of …
Data from Law Enforcement Management Information System (LEMIS) 2000–2014. Red indicates those originating from the wild. Blue indicates those originating from captive operations (animals bred in …
Data from Law Enforcement Management Information System (LEMIS) 2000–2014. Red indicates those originating from the wild. Blue indicates those originating from captive operations (animals bred in …
Data from Law Enforcement Management Information System (LEMIS) 2000–2014. Red indicates those originating from the wild. Blue indicates those originating from captive operations (animals bred in …
Data from Law Enforcement Management Information System (LEMIS) 2000–2014. Red indicates those originating from the wild. Blue indicates those originating from captive operations (animals bred in …
Data from Law Enforcement Management Information System (LEMIS) 2000–2014. Red indicates those originating from the wild. Blue indicates those originating from captive operations (animals bred in …
Data from Law Enforcement Management Information System (LEMIS) 2000–2014. Red indicates those originating from the wild. Blue indicates those originating from captive operations (animals bred in …
(A) The species described post-1999 detected in the trade displaying the year of description and the year detected in the trade. (B) Species described post-1999 but were only detected in the 2020 …
Light blue shows the total number of species per language, and percentage of the overall online species list. Dark blue shows the number of species unique to a particular language and the percentage …
The number of species per order is presented as an illustrative tree, alongside the % of the 8212 amphibian species in trade. The number of species that are covered by each CITES appendix is …
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Other | Data S1 – Target Websites Censored.csv | Self-generated via the use of http://www.google.com/ and http://www.bing.com/ | Data S1 | Website review and sampling |
Other | Data S2. Original AmphibiaWeb data (‘AmphibiaWeb 2020-08-29.csv’) | AmphibiaWeb: https://amphibiaweb.org/amphib_names.txt | Data S2 | Original AmphibiaWeb Data: Accessed 2020-08-29 |
Other | Data S3. Snapshot Online Data.csv | Self-generated | Data S3 | Online search results from the contemporary sample |
Other | Data S4 Temporal Online Data.csv | Self-generated via the Internet Archive’s Wayback Machine API and Terraristika (https://www.terraristik.com) | Data S4 | Online search results from the temporal sample |
Other | Data S5 new_list_amp_jan_FINAL.csv | Self-generated | Data S5 | Species listed purposes from each data source |
Other | Data S6 supplement_trade_keywords.csv | Self-generated | Data S6 | List of keywords associated the importers and exporters |
Other | Data S7 LEMIS Data AmphiNames.csv | Self-generated by combining aspects of Data S1 and data from LEMIS: Eskew EA, White AM, Ross N, Smith KM, Smith KF, Rodríguez JP, Zambrana-Torrelio C, Karesh WB, Daszak P. 2019. United States LEMIS wildlife trade data curated by EcoHealth Alliance. Zenodo Dataset. doi:10.5281/zenodo.3565869 | Data S7 | Filtered LEMIS data with AmphibiaWeb compatible names: Retrieved using the lemis package: Ross N, Eskew EA, White AM, Zambrana-Torrelio C. 2019. lemis: The LEMIS Wildlife Trade Database.https://github.com/ecohealthalliance/lemis#readme |
Other | Data S8 Index_of_CITES_Species_[CUSTOM]_2020-09-20 15_51.csv | CITES: http://checklist.cites.org/#/en | Data S8 | Filter CITES appendix data |
Other | Data S9 gross_imports_2020-09-20 15_25_comma_separated.csv | CITES: https://trade.cites.org/# | Data S9 | Filtered CITES data |
Other | Data S10 Amphibians_in_trade.csv | Self-generated using aspects of Data S2–S4, S7–S9 | Data S10 | The final dataset |
Other | Data S11. Amphibians_in_trade_METADATA.csv | Self-generated | Data S11 | The final dataset metadata |
Software, algorithm | R | R Core Team | Please see appropriate code listed in text | |
Software, algorithm | ArcGis | ESRI | ||
Other | IUCN species polygons | iucnredlist.org |
Code used to extract URLs from saved search result pages.
Code to collect website data using the hierarchical search method.
Code to collect website data from the wayback machine.
Code used to implement string matching searches for species keywords.
Code used to compile website search results with Law Enforcement Management Information System (LEMIS) and Convention on International Trade in Endangered Species (CITES) data.
Code used to filter initial Law Enforcement Management Information System (LEMIS) data.
Code used to summarise and explore Law Enforcement Management Information System (LEMIS) data.
Code used to generate summary figures.
Code used to generate figures showing change over time.
Code used to plot the different species counts between languages used during online searches.
Code used to retrieve species authorities.
Code used to calculate and plot lag times between species description and appearance in the trade.
Website review and sampling (‘Target Websites Censored.csv’).
Original AmphibiaWeb data (‘AmphibiaWeb 2020-08-29.csv’).
Online search results from the contemporary sample (‘Snapshot Online Data.csv’).
Online search results from the temporal sample (‘Temporal Online Data.csv’).
Species listed purposes from each data source (‘new_list_amp_jan_FINAL.csv’).
List of keywords associated the importers and exporters (‘supplement_trade_keywords.csv’).
Filtered Law Enforcement Management Information System (LEMIS) data with AmphibiaWeb compatible names (‘LEMIS Data AmphiNames.csv’).
Filter Convention on International Trade in Endangered Species (CITES) appendix data (‘Index_of_CITES_Species_[CUSTOM]_2020-09-20 15_51.csv’).
Filtered Convention on International Trade in Endangered Species (CITES) data (‘gross_imports_2020-09-20 15_25_comma_separated.csv’).
The final dataset (‘Amphibians_in_trade.csv’).
The final dataset metadata (‘Amphibians_in_trade_METADATA.csv’).