A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates
- University of Oxford, United Kingdom
- The Francis Crick Institute, United Kingdom
Abstract
Tuberculosis is a respiratory disease that is treatable with antibiotics. An increasing prevalence of resistance means that to ensure a good treatment outcome it is desirable to test the susceptibility of each infection to different antibiotics. Conventionally this is done by culturing a clinical sample and then exposing aliquots to a panel of antibiotics, Using 96-well broth micro dilution plates with each well containing a lyophilised predetermined amount of an antibiotic is a convenient and cost-effective way to measure the MICs of several drugs at once for a clinical sample. Although accurate, this is still an expensive and slow process that requires highly skilled and experienced laboratory scientists. Here we show that, through the BashTheBug project hosted on the Zooniverse citizen science platform, a crowd of volunteers can reproducibly and accurately determine the MICs for 13 drugs and that simply taking the median or mode of 11-17 independent classifications is sufficient. There is therefore a potential role for crowds to support (but not supplant) the role of experts in antibiotic susceptibility testing.
Data availability
The data tables and a Jupyter notebook that allows the user to recreate the majority of figures and tables in both the manuscript and the supplemental information is freely available here: https://github.com/fowler-lab/bashthebug-consensus-datasetIt is setup so a user can either clone the repository and run the jupyter-notebook on their local computer (the installation process having installed the pre-requisites) or by clicking the "Launch Binder" button in the README, they can access and run the jupyter-notebook via their web browser, thereby avoiding any installation.I've added a short statement to the manuscript -- please advise if you think it needs changing.
Article and author information
Author details
Ana L Gibertoni Cruz
Funding
Wellcome Trust (200205/Z/15/Z)
- Philip W Fowler
- Carla Wright
- Sarah W Hoosdally
- Ana L Gibertoni Cruz
- Aysha Roohi
- Samaneh Kouchaki
- Timothy M Walker
- Timothy EA Peto
- David Clifton
- Derrick W Crook
- A Sarah Walker
Bill and Melinda Gates Foundation (OPP1133541)
- Philip W Fowler
- Carla Wright
- Sarah W Hoosdally
- Ana L Gibertoni Cruz
- Aysha Roohi
- Samaneh Kouchaki
- Timothy M Walker
- Timothy EA Peto
- David Clifton
- Derrick W Crook
- A Sarah Walker
Wellcome Trust (203141/Z/16/Z)
- Philip W Fowler
The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
Reviewing Editor
- Bavesh D Kana, University of the Witwatersrand, South Africa
Version history
- Preprint posted: July 21, 2021 (view preprint)
- Received: October 28, 2021
- Accepted: May 15, 2022
- Accepted Manuscript published: May 19, 2022 (version 1)
- Accepted Manuscript updated: May 20, 2022 (version 2)
- Version of Record published: July 15, 2022 (version 3)
Copyright
© 2022, Fowler et al.
This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.
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A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates
eLife 11:e75046.
https://doi.org/10.7554/eLife.75046
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