(A) STROBE diagram for selection of study-eligible patients with potentially operable pancreatic ductal adenocarcinoma undergoing neoadjuvant chemotherapy and curative-intent pancreatectomy, …
(A) Schematic of in vivo experimental design, illustrating treatment groups utilized (vehicle, anti-Ly6G [αLy6G] alone, gemcitabine/paclitaxel alone, and gemcitabine/paclitaxel+αLy6G), treatment …
(A) viSNE maps depicting comparison of splenocyte-derived circulating Ly6G+ (left) and Ly6C+ (right) MDSCs gated within Cd11b+F4/80 cells in NLR-attenuating anti-Ly6G (25 μg) vs. vehicle-treated KPC …
(A) Representative contour plots of CD45-CD31-PDPN+ cancer-associated fibroblasts (CAF) gated on Ly6C and MHC-II across vehicle, NLR-attenuating αLy6G, gemcitabine plus paclitaxel (Gem/Pac) alone, …
(A) Bubble plot representing multiplex cytokine array performed on condition media from column-sorted Ly6G+F4/80- neutrophils (24-hr culture) derived from whole pancreata of KPC orthotopic mice. The …
Area under the receiver operating characteristic curve (AUC) statistics estimating the predictive capacity of three biomarker models (pre-chemotherapy aNLR only, ΔNLR only, combined model aNLR + …
Time-dependent AUC analysis with internal bootstrap validation examining the three biomarker models for (A) disease-free survival (DFS; left) and (B) overall survival (OS; left) for years 1–3. …
(A) Representative flow cytometry contour plots depicting circulating splenocyte-derived Ly6G+ (top) and CD3+ (bottom) cell populations 2 weeks following anti-Ly6G dose titration experiment to …
(A) Mean (± standard deviation) body weights, and (B) mean ± SD of alanine transferase (ALT) levels from blood of mice in each cohort (n=8–10/group) graphed at 3 time points based on treatment …
(A) Gating strategy for flow cytometric analysis of PDPN+ CAF populations after exclusion of CD45+, EpCAM+, and CD31+ cells; (B) Dot plot from single cell RNA sequencing (scRNAseq) dataset …
Schematic of experimental design illustrating ex vivo co-culture of KPC CAFs with intratumoral column-sorted Ly6G+F4/80 cells from whole pancreata of KPC orthotopic mice, with or without …
(A) Schematic of experimental design showing timing/dosing of anti-Ly6G treatment in orthotopic KPC tumor-bearing mice (top), with adjacent histograms showing (% of parent CD45+ cells) relative …
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Cell line (Mus musculus) | Pancreatic Tumor Cells from KrasLSL-12D/+;Trp53R172H/+;Pdx1Cre (KPC) mouse | Ben Stanger/UPenn | KPC6694c2 | |
Cell line (Mus musculus) | Tumor associated fibroblasts from KPC mouse | Nagathihalli et al., 2016 | KPC CAFs | |
Other | Ptf1aCre/+;KrasLSL-G12D/+;Tgfbr2flox/flox | Datta et al., 2022 | PKT | Genetically engineered mouse |
Antibody | Anti-Ly6G (Rat monoclonal) reactive to mouse | BioXcell | Clone 1A8 Catalog# BE0075-1 | 25 μg/dose |
Antibody | Anti-IL-1β neutralizing antibody (E. coli, polyclonal) | R&D Systems | Catalog# AF-401-NA | 1:80 |
Antibody | Cxcl1 (Rabbit, monoclonal) Reactive to human and mouse | Abcam | Catalog# ab86436 | 1:500 |
Antibody | Podoplanin (Mouse, monoclonal) Reactive to human | Cell Signalling | Catalog# 26981 | 1:200 |
Antibody | Podoplanin (Syrian hamster, monoclonal) Reactive to mouse | Abcam | Catalog# ab92319 | 1:200 |
Antibody | CD3 (170Er, Human, monoclonal) 3170019D | Fluidigm | 3170019D | 1:1000 |
Antibody | CD11B (149Sm, Human, monoclonal) | Fluidigm | 3149028D | 1:1000 |
Antibody | α-SMA (141Pr, Human, monoclonal) | Fluidigm | 314017D | 1:1000 |
Antibody | Pan-Cytokeratin (148Nd, Human, monoclonal) | Fluidigm | 3148022D | 1:1000 |
Antibody | CD15 (164Dy, Human, monoclonal) | Fluidigm | 3164001B | 1:1000 |
Antibody | CD8 (146Nd, Human, monoclonal) | Fluidigm | 3146001B | 1:1000 |
Chemical compound, drug | Anakinra | SOBI Pharmaceuticals | α-IL-1R1 inhibitor | |
Sequence-based reagent | Cxcl1 Primer - Mouse | Qiagen | Gene ID - QT00115647 | |
Sequence-based reagent | Il6 Primer - Mouse | Qiagen | Gene ID - QT00098875 | |
Commercial assay or kit | Cytokine array - Mouse | R&D Systems | ARY006 |
Variable | All patients (n=94) | Complete/ partial response to NAC (n=66) | Absent/poor response to NAC(n=28) | P-value |
---|---|---|---|---|
Age (mean ± SD) | 67.3±10.3 | 67.5±10.9 | 66.9±8.9 | 0.78 |
Female gender, n (%) | 58 (61.7 %) | 41 (62.1%) | 17 (60.7%) | 0.89 |
Diagnosis BMI, (mean ± SD) | 26.7±4.9 | 26.8±5 | 26.4±4.6 | 0.68 |
Hispanic Ethnicity, n (%) | 43 (45.8%) | 30 (45.5%) | 13 (46.4%) | 0.64 |
Germline HRD mutation, n (%) Germline HRD mutation No germline HRD mutation | 6 (6.3%) 88 (93.7%) | 6 (9.1%) 60 (91.9%) | 0 (0%) 28 (100%) | 0.17 |
Pre-chemotherapy Absolute Blood Counts Total Leukocyte count (103 /μl) Neutrophil count (%) Lymphocyte count (%) Platelet count (103 /μl) | 7.2±1.6 65.3±7.3 22.3±7.0 243±71.5 | 7.2±1.8 63.7±6.9 24.8±6.7 246±69.5 | 7.25±1.5 69.7±4.1 17.6±3.5 234±77.3 | 0.92 <0.001 <0.001 0.59 |
Pre-chemotherapy Neutrophil/Lymphocyte Ratio (median ± SD) | 3.0±1.3 | 2.5±1.0 | 3.9±1.2 | <0.001 |
Diagnosis CA 19–9 levels (median ± SD) | 181±1,823 | 147±923 | 202±2,944 | 0.50 |
Pre-Surgery Absolute Blood Counts Total Leukocyte count (103 /ul) Neutrophil count (%) Lymphocyte count (%) Platelet count (* 103 /ul) | 7±1.92 63.2±9.5 23.6±7.7 198±74.1 | 6.1±1.72 60±7.8 26.5±6.4 203±57.8 | 8.5±1.95 71±6.25 16.7±4.7 181±104 | 0.01 <0.001 <0.001 0.03 |
Pre-Surgery Neutrophil/ Lymphocyte Ratio (median ± SD) | 2.6±1.57 | 2.3±0.78 | 4.2±1.68 | <0.001 |
ΔNLR (=Pre-Surgery-Pre-Chemo NLR) (median ± SD) | - 0.1±1.25 | - 0.38±1.1 | 0.21±1.5 | 0.01 |
ECOG Status, n (%) 0 1 2 | 36 (38.3%) 49 (52.1%) 9 (9.6%) | 27 (40.9%) 34 (51.5%) 5 (7.6%) | 9 (32.1%) 15 (53.6%) 4 (14.3%) | 0.51 |
Tumor location Head Body Tail | 76 (80.8%) 9 (9.6%) 9 (9.6%) | 53 (80.3%) 6 (9.1%) 7 (10.6%) | 23 (82.1%) 3 (10.7%) 2 (7.2%) | 0.96 |
Resectability status Resectable Borderline resectable Locally advanced | 21 (22.3%) 50 (53.2%) 23 (24.5%) | 15 (22.7%) 36 (54.6%) 15 (22.7%) | 6 (21.4%) 14 (50.0%) 8 (28.6%) | 0.83 |
Radiographic tumor size (median ± SD) | 30±14.2 | 30±10.7 | 28.5±20.2 | 0.19 |
Neoadjuvant Chemotherapy Gemcitabine/Abraxane FOLFIRINOX Both | 35 (37.2%) 49 (52.2%) 10 (10.6%) | 26 (39.4%) 33 (50.0%) 7 (10.6%) | 9 (32.1%) 16 (57.1%) 3 (10.8%) | 0.79 |
Duration of NAC (months)* | 4±2.3 | 4±2.2 | 4±2.6 | 0.22 |
Use of G-CSF during NAC | 91 (96.8%) | 64 (97.0%) | 27 (96.4%) | 1.00 |
Neoadjuvant radiation | 6 (6.4%) | 4 (6.1%) | 2 (7.1%) | 1.00 |
Histology grade† Well Differentiated Moderately differentiated Poorly differentiated | 2 (2.1%) 59 (62.8%) 27 (28.7%) | 2 (3%) 49 (74.2%) 11 (16.7%) | 0 (0%) 10 (35.7%) 16 (57.1%) | 0.002 |
pT classification T1 T2 T3 T4 | 27 (28.7%) 33 (35.1%) 28 (29.8%) 6 (6.4%) | 27 (40.9%) 22 (33.3%) 14 (21.3%) 3 (4.5%) | 0 (0%) 11 (39.3%) 14 (50.0%) 3 (10.7%) | <0.001 |
pN classification Positive Negative | 52 (55.3%) 42 (44.7%) | 32 (48.5%) 34 (51.5%) | 20 (71.4%) 8 (28.6%) | 0.04 |
Pathological Stage IA IB IIA IIB III IV | 17 (18.1%) 12 (12.8%) 10 (10.6%) 47 (50%) 7 (7.4%) 1 (1.1%) | 17 (25.7%) 9 (13.6%) 6 (9.1%) 30 (45.5%) 4 (6.1%) 0 (0%) | 0 (0%) 3 (10.7%) 4 (14.3%) 17 (60.7%) 3 (10.7%) 1 (3.6%) | 0.04 |
Neoadjuvant therapy response (CAP grading)‡ Grade 0 Grade 1 Grade 2 Grade 3 | 0 (0%) 12 (12.8%) 54 (57.4%) 28 (29.8%) | - 12 (18.2%) 54 (81.8%) - | 28 (100%) | N/A |
R0 resection margin Yes No (R1 resection) | 78 (83%) 16 (17%) | 61 (92.4%) 5 (7.6%) | 17 (60.7%) 11 (39.3%) | <0.001 |
Adjuvant therapy, n (%) | 58 (61.7%) | 43 (65.2%) | 15 (53.6%) | 0.29 |
Local Recurrence Yes No | 19 (20.2%) 75 (79.8 %) | 10 (15.2%) 56 (84.8%) | 9 (32.1%) 19 (67.8%) | 0.06 |
Distant Recurrence Yes No | 55 (58.5%) 39 (41.5%) | 34 (51.5%) 32 (48.5%) | 21 (75%) 7 (25%) | 0.03 |
Due to variation in dose scheduling between FOLFIRINOX and gemcitabine/abraxane, duration of NAC is reported in months (vs. number of cycles)
Grade information missing in 6 patients
College of American Pathologist (CAP) grading: Grade 0, no viable residual tumor (pathologic complete response); Grade 1, marked response (minimal residual cancer with single cells or small groups of cancer cells); Grade 2, partial response (residual cancer with evident tumor regression, but more than single cells or rare small groups of cancer cells); and Grade 3, poor or no response (extensive residual cancer with no evident tumor regression)
Pt # | Primary tumor | NAC regimen | Duration of NAC (mo) | Neoadjuvant radiation | Pathologic response | # total single cells in IMC slide | #CD11b+CD15+ neutrophils | #CD3+CD8+ T cells | NLR (norm. to 5000 cells) |
---|---|---|---|---|---|---|---|---|---|
1 | Borderline Resectable | FFX | 4 | No | Partial (CAP 2) | 4326 | 325 | 29 | 11.2 |
2 | Borderline Resectable | FFX | 4.5 | No | Partial (CAP 2) | 3256 | 256 | 32 | 7.9 |
3 | Locally Advanced* | GNP | 6 | No | Near-complete (CAP 1) | 9421 | 472 | 142 | 3.3 |
4 | Borderline Resectable | GNP | 5 | No | Poor/Absent (CAP 3) | 8621 | 951 | 61 | 15.6 |
5 | Locally Advanced* | FFX | 6 | No | Poor/Absent (CAP 3) | 6011 | 1105 | 59 | 18.7 |
6 | Resectable | FFX +GNP | 6 | No | Poor/Absent (CAP 3) | 4712 | 523 | 40 | 13.1 |
Representative tissue and image segmentation maps depicted in Figure 4
Variable | OR (95% CI) | P-value |
---|---|---|
Age | 1.02 (0.92, 1.09) | 0.68 |
Gender Female Male | Ref 2.86 (0.45, 26.2) | - 0.34 |
Diagnosis BMI | 0.88 (0.74, 1.08) | 0.21 |
CA 19–9 dynamics Any increase Any decrease | Ref 1.82 (0.001, 3.74) | - 0.05 |
Resectability Status Borderline Locally advanced Resectable | Ref 2.72 (0.22, 33.2) 0.64 (0.06, 7.44) | - 0.43 0.72 |
Radiographic tumor size | 0.98 (0.91, 1.05) | 0.54 |
NAC duration (months) | 1.09 (0.68, 1.75) | 0.73 |
Absolute pre-chemotherapy aNLR Low High | Ref 0.02 (0.003, 0.15) | <0.001 |
ΔNLR Low High | Ref 0.06 (0.01, 0.33) | 0.002 |
Clinical Cohort and Western Blotting Source Data.