Fetal growth delay caused by loss of non-canonical imprinting is resolved late in pregnancy and culminates in offspring overgrowth

  1. Ruby Oberin
  2. Sigrid Petautschnig
  3. Ellen G Jarred
  4. Zhipeng Qu
  5. Tesha Tsai Ph.D.
  6. Neil A Youngson
  7. Gabrielle Pulsoni
  8. Thi T Truong
  9. Dilini Fernando
  10. Heidi Bildsoe Ph.D.
  11. Rheannon O Blucher
  12. Maarten van den Buuse
  13. David K Gardner
  14. Natalie A Sims
  15. David Louis Adelson
  16. Patrick S Western  Is a corresponding author
  1. Monash University, Australia
  2. University of Adelaide, Australia
  3. University of Melbourne, Australia
  4. La Trobe University, Australia
  5. St. Vincent's Hospital, Australia

Abstract

Germline epigenetic programming, including genomic imprinting, substantially influences offspring development. Polycomb Repressive Complex 2 (PRC2) plays an important role in Histone 3 Lysine 27 trimethylation (H3K27me3)-dependent imprinting, loss of which leads to growth and developmental changes in mouse offspring. In this study, we show that offspring from mouse oocytes lacking the PRC2 protein Embryonic Ectoderm Development (EED) were initially developmentally delayed, characterised by low blastocyst cell counts and substantial growth delay in mid-gestation embryos. This initial developmental delay was resolved as offspring underwent accelerated fetal development and growth in late gestation resulting in offspring that were similar stage and weight to controls at birth. The accelerated development and growth in offspring from Eed-null oocytes was associated with remodelling of the placenta, which involved an increase in fetal and maternal tissue size, conspicuous expansion of the glycogen enriched cell population and delayed parturition. Despite placental remodelling and accelerated offspring fetal growth and development, placental efficiency and fetal blood glucose levels were low, and the fetal blood metabolome was unchanged. Moreover, while expression of the H3K27me3-imprinted gene and amino acid transporter Slc38a4 was increased, fetal blood levels of individual amino acids were similar to controls, indicating that placental amino acid transport was not enhanced. Genome-wide analyses identified extensive transcriptional dysregulation and DNA methylation changes in affected placentas, including a range of imprinted and non-imprinted genes. Together, while deletion of Eed in growing oocytes resulted in fetal growth and developmental delay and placental hyperplasia, our data indicate a remarkable capacity for offspring fetal growth to be normalised despite inefficient placental function and the loss of H3K27me3-dependent genomic imprinting.

Data availability

All RNA sequencing and RRBS data have been deposited to the Gene Expression Omnibus (GEO) and are publicly available with accession number GSE210398. The metabolomics data are available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org where it has been assigned Study ID ST003211. The data can be accessed directly via its Project DOI: http://doi.org/10.21228/M8TR5T. Data for Figures 6 and 8 are included in Supplementary file 1.

The following data sets were generated

Article and author information

Author details

  1. Ruby Oberin

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  2. Sigrid Petautschnig

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  3. Ellen G Jarred

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  4. Zhipeng Qu

    Department of Molecular and Biomedical Sciences, University of Adelaide, Adelaide, Australia
    Competing interests
    The authors declare that no competing interests exist.
  5. Tesha Tsai Ph.D.

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  6. Neil A Youngson

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  7. Gabrielle Pulsoni

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  8. Thi T Truong

    School of BioSciences, University of Melbourne, Parkville, Australia
    Competing interests
    The authors declare that no competing interests exist.
  9. Dilini Fernando

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  10. Heidi Bildsoe Ph.D.

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  11. Rheannon O Blucher

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    Competing interests
    The authors declare that no competing interests exist.
  12. Maarten van den Buuse

    School of Psychology and Public Health, La Trobe University, Melbourne, Australia
    Competing interests
    The authors declare that no competing interests exist.
  13. David K Gardner

    School of BioSciences, University of Melbourne, Melbourne, Australia
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-3138-8274
  14. Natalie A Sims

    Department of Medicine, St. Vincent's Hospital, Fitzroy, Australia
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1421-8468
  15. David Louis Adelson

    Department of Molecular and Biomedical Sciences, University of Adelaide, Adelaide, Australia
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-2404-5636
  16. Patrick S Western

    Department of Molecular and Translational Science, Monash University, Clayton, Australia
    For correspondence
    patrick.western@hudson.org.au
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-7587-8227

Funding

National Health and Medical Research Council (1144966)

  • Maarten van den Buuse
  • David K Gardner
  • David Louis Adelson
  • Patrick S Western

National Health and Medical Research Council (1144887)

  • David K Gardner
  • David Louis Adelson
  • Patrick S Western

National Health and Medical Research Council (2021247)

  • David Louis Adelson
  • Patrick S Western

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Adèle L Marston, University of Edinburgh, United Kingdom

Ethics

Animal experimentation: All animal work was undertaken in accordance with Monash University Animal Ethics Committee (AEC) approvals issued by Monash University and Hudson Institute Animal Ethics Committees (AEC), approval numbers MMCB/2018/16 and MMCB/2020/37

Version history

  1. Received: July 14, 2022
  2. Preprint posted: August 11, 2022 (view preprint)
  3. Accepted: May 2, 2024
  4. Accepted Manuscript published: May 30, 2024 (version 1)
  5. Version of Record published: May 30, 2024 (version 2)

Copyright

© 2024, Oberin et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 247
    views
  • 46
    downloads
  • 0
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Ruby Oberin
  2. Sigrid Petautschnig
  3. Ellen G Jarred
  4. Zhipeng Qu
  5. Tesha Tsai Ph.D.
  6. Neil A Youngson
  7. Gabrielle Pulsoni
  8. Thi T Truong
  9. Dilini Fernando
  10. Heidi Bildsoe Ph.D.
  11. Rheannon O Blucher
  12. Maarten van den Buuse
  13. David K Gardner
  14. Natalie A Sims
  15. David Louis Adelson
  16. Patrick S Western
(2024)
Fetal growth delay caused by loss of non-canonical imprinting is resolved late in pregnancy and culminates in offspring overgrowth
eLife 13:e81875.
https://doi.org/10.7554/eLife.81875

Share this article

https://doi.org/10.7554/eLife.81875

Further reading

    1. Developmental Biology
    Phuong-Khanh Nguyen, Louise Cheng
    Research Article

    The brain is consisted of diverse neurons arising from a limited number of neural stem cells. Drosophila neural stem cells called neuroblasts (NBs) produces specific neural lineages of various lineage sizes depending on their location in the brain. In the Drosophila visual processing centre - the optic lobes (OLs), medulla NBs derived from the neuroepithelium (NE) give rise to neurons and glia cells of the medulla cortex. The timing and the mechanisms responsible for the cessation of medulla NBs are so far not known. In this study, we show that the termination of medulla NBs during early pupal development is determined by the exhaustion of the NE stem cell pool. Hence, altering NE-NB transition during larval neurogenesis disrupts the timely termination of medulla NBs. Medulla NBs terminate neurogenesis via a combination of apoptosis, terminal symmetric division via Prospero, and a switch to gliogenesis via Glial Cell Missing (Gcm), however, these processes occur independently of each other. We also show that temporal progression of the medulla NBs is mostly not required for their termination. As the Drosophila OL shares a similar mode of division with mammalian neurogenesis, understanding when and how these progenitors cease proliferation during development can have important implications for mammalian brain size determination and regulation of its overall function.

    1. Developmental Biology
    Sanjay Kumar Sukumar, Vimala Antonydhason ... Ruth H Palmer
    Research Article

    Numerous roles for the Alk receptor tyrosine kinase have been described in Drosophila, including functions in the central nervous system (CNS), however the molecular details are poorly understood. To gain mechanistic insight, we employed Targeted DamID (TaDa) transcriptional profiling to identify targets of Alk signaling in the larval CNS. TaDa was employed in larval CNS tissues, while genetically manipulating Alk signaling output. The resulting TaDa data were analyzed together with larval CNS scRNA-seq datasets performed under similar conditions, identifying a role for Alk in the transcriptional regulation of neuroendocrine gene expression. Further integration with bulk and scRNA-seq datasets from larval brains in which Alk signaling was manipulated identified a previously uncharacterized Drosophila neuropeptide precursor encoded by CG4577 as an Alk signaling transcriptional target. CG4577, which we named Sparkly (Spar), is expressed in a subset of Alk-positive neuroendocrine cells in the developing larval CNS, including circadian clock neurons. In agreement with our TaDa analysis, overexpression of the Drosophila Alk ligand Jeb resulted in increased levels of Spar protein in the larval CNS. We show that Spar protein is expressed in circadian (clock) neurons, and flies lacking Spar exhibit defects in sleep and circadian activity control. In summary, we report a novel activity regulating neuropeptide precursor gene that is regulated by Alk signaling in the Drosophila CNS.