Abstract

Actin isoforms organize into distinct networks that are essential for the normal function of eukaryotic cells. Despite a high level of sequence and structure conservation, subtle differences in their design principles determine the interaction with myosin motors and actin-binding proteins (ABPs). Therefore, identifying how the structure of actin isoforms relates to function is important for our understanding of normal cytoskeletal physiology. Here, we report the high-resolution structures of filamentous skeletal muscle a-actin (3.37Å), cardiac muscle a-actin (3.07Å), ß-actin (2.99Å), and g-actin (3.38Å) in the Mg2+·ADP state with their native PTMs. The structures revealed isoform-specific conformations of the N-terminus that shift closer to the filament surface upon myosin binding, thereby establishing isoform-specific interfaces. Collectively, the structures of single-isotype, post-translationally modified bare skeletal muscle a-actin, cardiac muscle a-actin, ß-actin, and g-actin reveal general principles, similarities, and differences between isoforms. They complement the repertoire of known actin structures and allow for a comprehensive understanding of in vitro and in vivo functions of actin isoforms.

Data availability

All the structures and electron density maps generated have been deposited in the Protein Data Bank (PDB) and Electron Microscopy Data Bank (EMDB). The PDB and EMDB entries are 8DMX and EMD-27548; 8DMY and EMD-27549; 8DNH and EMD-27572; 8DNF and EMD-27565.

The following data sets were generated

Article and author information

Author details

  1. Amandeep Singh Arora

    Department of Physiology and Cell Biology, The Ohio State University, Columbus, United States
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1045-1967
  2. Hsiang-Ling Huang

    Department of Physiology and Cell Biology, The Ohio State University, Columbus, United States
    Competing interests
    No competing interests declared.
  3. Ramanpreet Singh

    Department of Physiology and Cell Biology, The Ohio State University, Columbus, United States
    Competing interests
    No competing interests declared.
  4. Yoshie Narui

    Center for Electron Microscopy and Analysis, The Ohio State University, Columbus, United States
    Competing interests
    No competing interests declared.
  5. Andrejus Suchenko

    Centre for Mechanochemical Cell Biology, University of Warwick, Coventry, United Kingdom
    Competing interests
    No competing interests declared.
  6. Tomoyuki Hatano

    Division of Biomedical Sciences, University of Warwick, Coventry, United Kingdom
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-9092-3989
  7. Sarah M Heissler

    Department of Physiology and Cell Biology, The Ohio State University, Columbus, United States
    Competing interests
    No competing interests declared.
  8. Mohan K Balasubramanian

    Division of Biomedical Sciences, University of Warwick, Coventry, United Kingdom
    Competing interests
    Mohan K Balasubramanian, Reviewing editor, eLife.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-1292-8602
  9. Krishna Chinthalapudi

    Department of Physiology and Cell Biology, The Ohio State University, Columbus, United States
    For correspondence
    krishna.chinthalapudi@osumc.edu
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-3669-561X

Funding

National Institutes of Health (R01GM143539)

  • Krishna Chinthalapudi

National Institutes of Health (K22HL131869)

  • Sarah M Heissler

Wellcome Trust (203276/Z/16/Z)

  • Mohan K Balasubramanian

European Research Council (ERC-2014-ADG No. 671083)

  • Mohan K Balasubramanian

Biotechnology and Biological Sciences Research Council (BB/S003789/1)

  • Mohan K Balasubramanian

National Institutes of Health (R01GM143414)

  • Sarah M Heissler

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2023, Arora et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 3,281
    views
  • 544
    downloads
  • 26
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Amandeep Singh Arora
  2. Hsiang-Ling Huang
  3. Ramanpreet Singh
  4. Yoshie Narui
  5. Andrejus Suchenko
  6. Tomoyuki Hatano
  7. Sarah M Heissler
  8. Mohan K Balasubramanian
  9. Krishna Chinthalapudi
(2023)
Structural insights into actin isoforms
eLife 12:e82015.
https://doi.org/10.7554/eLife.82015

Share this article

https://doi.org/10.7554/eLife.82015

Further reading

    1. Biochemistry and Chemical Biology
    2. Stem Cells and Regenerative Medicine
    Alejandro J Brenes, Eva Griesser ... Angus I Lamond
    Research Article

    Human induced pluripotent stem cells (hiPSCs) have great potential to be used as alternatives to embryonic stem cells (hESCs) in regenerative medicine and disease modelling. In this study, we characterise the proteomes of multiple hiPSC and hESC lines derived from independent donors and find that while they express a near-identical set of proteins, they show consistent quantitative differences in the abundance of a subset of proteins. hiPSCs have increased total protein content, while maintaining a comparable cell cycle profile to hESCs, with increased abundance of cytoplasmic and mitochondrial proteins required to sustain high growth rates, including nutrient transporters and metabolic proteins. Prominent changes detected in proteins involved in mitochondrial metabolism correlated with enhanced mitochondrial potential, shown using high-resolution respirometry. hiPSCs also produced higher levels of secreted proteins, including growth factors and proteins involved in the inhibition of the immune system. The data indicate that reprogramming of fibroblasts to hiPSCs produces important differences in cytoplasmic and mitochondrial proteins compared to hESCs, with consequences affecting growth and metabolism. This study improves our understanding of the molecular differences between hiPSCs and hESCs, with implications for potential risks and benefits for their use in future disease modelling and therapeutic applications.

    1. Biochemistry and Chemical Biology
    2. Structural Biology and Molecular Biophysics
    Jie Luo, Jeff Ranish
    Tools and Resources

    Dynamic conformational and structural changes in proteins and protein complexes play a central and ubiquitous role in the regulation of protein function, yet it is very challenging to study these changes, especially for large protein complexes, under physiological conditions. Here, we introduce a novel isobaric crosslinker, Qlinker, for studying conformational and structural changes in proteins and protein complexes using quantitative crosslinking mass spectrometry. Qlinkers are small and simple, amine-reactive molecules with an optimal extended distance of ~10 Å, which use MS2 reporter ions for relative quantification of Qlinker-modified peptides derived from different samples. We synthesized the 2-plex Q2linker and showed that the Q2linker can provide quantitative crosslinking data that pinpoints key conformational and structural changes in biosensors, binary and ternary complexes composed of the general transcription factors TBP, TFIIA, and TFIIB, and RNA polymerase II complexes.