Abstract

Transsynaptic viral vectors provide means to gain genetic access to neurons based on synaptic connectivity and are essential tools for the dissection of neural circuit function. Among them, the retrograde monosynaptic ΔG-Rabies has been widely used in neuroscience research. A recently developed engineered version of the ΔG-Rabies, the non-toxic self-inactivating (SiR) virus, allows the long term genetic manipulation of neural circuits. However, the high mutational rate of the rabies virus poses a risk that mutations targeting the key genetic regulatory element in the SiR genome could emerge and revert it to a canonical ΔG-Rabies. Such revertant mutations have recently been identified in a SiR batch. To address the origin, incidence and relevance of these mutations, we investigated the genomic stability of SiR in vitro and in vivo. We found that “revertant” mutations are rare and accumulate only when SiR is extensively amplified in vitro, particularly in suboptimal production cell lines that have insufficient levels of TEV protease activity. Moreover, we confirmed that SiR-CRE, unlike canonical ΔG-Rab-CRE or revertant-SiR-CRE, is non-toxic and that revertant mutations do not emerge in vivo during long-term experiments.

Data availability

Data generated during this study are included in the manuscript and supporting files. The viral vectors used in this study have been previously described (Ciabatti, et al, 2017) and are available from Addgene. The raw NGS datasets have been deposited into NCBI's Sequence Read Archive (SRA) and are accessible through accession number PRJNA888353.

The following data sets were generated

Article and author information

Author details

  1. Ernesto Ciabatti

    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
    For correspondence
    ciabatti@mrc-lmb.cam.ac.uk
    Competing interests
    Ernesto Ciabatti, The SiR technology is patented by the UK Research and Innovation (WO2018203049A1)..
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-9361-5992
  2. Ana González-Rueda

    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
    Competing interests
    No competing interests declared.
  3. Daniel de Malmazet

    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
    Competing interests
    No competing interests declared.
  4. Hassal Lee

    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
    Competing interests
    No competing interests declared.
  5. Fabio Morgese

    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
    Competing interests
    No competing interests declared.
  6. Marco Tripodi

    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom
    Competing interests
    Marco Tripodi, MT, Conceived the project, Secured funding, Wrote the manuscript..

Funding

Medical Research Council (MRC-UP_1201/2)

  • Marco Tripodi

European Research Council (STG-677029)

  • Marco Tripodi

Marie Sklodowska-Curie Fellowship (Postdoctoral Fellowship)

  • Daniel de Malmazet

Cambridge Philosophical Society and St. Edmund's College (Henslow Research Fellowship)

  • Ana González-Rueda

Rosetrees Trust (MBPhD fellowship)

  • Hassal Lee

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Stephen D Liberles, Howard Hughes Medical Institute, Harvard Medical School, United States

Ethics

Animal experimentation: This study was performed in strict accordance with the UK Animals (Scientific procedures) Act 1986 and European Community Council Directive on Animal Care. Animals were housed in a 12 hours light/dark cycle with food and water ad libitum.

Version history

  1. Preprint posted: September 19, 2020 (view preprint)
  2. Received: September 14, 2022
  3. Accepted: November 2, 2023
  4. Accepted Manuscript published: November 3, 2023 (version 1)
  5. Version of Record published: November 23, 2023 (version 2)

Copyright

© 2023, Ciabatti et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

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  1. Ernesto Ciabatti
  2. Ana González-Rueda
  3. Daniel de Malmazet
  4. Hassal Lee
  5. Fabio Morgese
  6. Marco Tripodi
(2023)
Genomic stability of self-inactivating rabies
eLife 12:e83459.
https://doi.org/10.7554/eLife.83459

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https://doi.org/10.7554/eLife.83459

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