A methylation-phosphorylation switch controls EZH2 stability and hematopoiesis

  1. Pengfei Guo
  2. Rebecca C. Lim
  3. Keshari Rajawasam
  4. Tiffany Trinh
  5. Hong Sun  Is a corresponding author
  6. Hui Zhang  Is a corresponding author
  1. University of Nevada, Las Vegas, United States

Abstract

The Polycomb Repressive Complex 2 (PRC2) methylates H3K27 to regulate development and cell fate by transcriptional silencing. Alteration of PRC2 is associated with various cancers. Here, we show that mouse Kdm1a deletion causes dramatic reduction of PRC2 proteins, whereas mouse null mutation of L3mbtl3 or Dcaf5 results in PRC2 accumulation and increased H3K27 trimethylation. The catalytic subunit of PRC2, EZH2, is methylated at lysine 20 (K20), promoting EZH2 proteolysis by L3MBTL3 and the CLR4DCAF5 ubiquitin ligase. KDM1A (LSD1) demethylates the methylated K20 to stabilize EZH2. K20 methylation is inhibited by AKT-mediated phosphorylation of serine 21 in EZH2. Mouse Ezh2K20R/K20R mutants develop hepatosplenomegaly associated with high GFI1B expression, and Ezh2K20R/K20R mutant bone marrows expand hematopoietic stem cells and downstream hematopoietic populations. Our studies reveal that EZH2 is regulated by methylation-dependent proteolysis, which is negatively controlled by AKT-mediated S21 phosphorylation to establish a methylation-phosphorylation switch to control the PRC2 activity and hematopoiesis.

Data availability

All data generated 801 during this study are included in the manuscript. Uncropped immunoblots, immunostaining, and gel blot images are accessible as source data

Article and author information

Author details

  1. Pengfei Guo

    Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Las Vegas, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-6734-6549
  2. Rebecca C. Lim

    Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Las Vegas, United States
    Competing interests
    The authors declare that no competing interests exist.
  3. Keshari Rajawasam

    Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Las Vegas, United States
    Competing interests
    The authors declare that no competing interests exist.
  4. Tiffany Trinh

    Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Las Vegas, United States
    Competing interests
    The authors declare that no competing interests exist.
  5. Hong Sun

    Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Las Vegas, United States
    For correspondence
    hong.sun@unlv.edu
    Competing interests
    The authors declare that no competing interests exist.
  6. Hui Zhang

    Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Las Vegas, United States
    For correspondence
    hui.zhang@unlv.edu
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-6028-2554

Funding

National Institutes of Health (R15CA254827)

  • Hong Sun

National Institutes of Health (R01GM140185)

  • Hui Zhang

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Ethics

Animal experimentation: All animal experiments including breeding, housing, genotyping, and sample collection were conducted in accordance with the animal protocols approved by the institutional Animal Use and Care Committee (IACUC) and complied with all relevant ethical regulations at University of Nevada, Las Vegas. All procedures were conducted according to the National Institutes of Health (NIH) Guide for Care and Use of Laboratory Animals. The UNLV IACUC is an AAALAC approved facility and meets the NIH Guide for the Care and Use of Animals. protocols (IACUC-01161)711621 and (IACUC-01177)832146 described previously (Guo et al., 2022).

Copyright

© 2024, Guo et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 988
    views
  • 194
    downloads
  • 2
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Pengfei Guo
  2. Rebecca C. Lim
  3. Keshari Rajawasam
  4. Tiffany Trinh
  5. Hong Sun
  6. Hui Zhang
(2024)
A methylation-phosphorylation switch controls EZH2 stability and hematopoiesis
eLife 13:e86168.
https://doi.org/10.7554/eLife.86168

Share this article

https://doi.org/10.7554/eLife.86168

Further reading

    1. Biochemistry and Chemical Biology
    2. Structural Biology and Molecular Biophysics
    Jie Luo, Jeff Ranish
    Tools and Resources

    Dynamic conformational and structural changes in proteins and protein complexes play a central and ubiquitous role in the regulation of protein function, yet it is very challenging to study these changes, especially for large protein complexes, under physiological conditions. Here, we introduce a novel isobaric crosslinker, Qlinker, for studying conformational and structural changes in proteins and protein complexes using quantitative crosslinking mass spectrometry. Qlinkers are small and simple, amine-reactive molecules with an optimal extended distance of ~10 Å, which use MS2 reporter ions for relative quantification of Qlinker-modified peptides derived from different samples. We synthesized the 2-plex Q2linker and showed that the Q2linker can provide quantitative crosslinking data that pinpoints key conformational and structural changes in biosensors, binary and ternary complexes composed of the general transcription factors TBP, TFIIA, and TFIIB, and RNA polymerase II complexes.

    1. Biochemistry and Chemical Biology
    2. Stem Cells and Regenerative Medicine
    Alejandro J Brenes, Eva Griesser ... Angus I Lamond
    Research Article

    Human induced pluripotent stem cells (hiPSCs) have great potential to be used as alternatives to embryonic stem cells (hESCs) in regenerative medicine and disease modelling. In this study, we characterise the proteomes of multiple hiPSC and hESC lines derived from independent donors and find that while they express a near-identical set of proteins, they show consistent quantitative differences in the abundance of a subset of proteins. hiPSCs have increased total protein content, while maintaining a comparable cell cycle profile to hESCs, with increased abundance of cytoplasmic and mitochondrial proteins required to sustain high growth rates, including nutrient transporters and metabolic proteins. Prominent changes detected in proteins involved in mitochondrial metabolism correlated with enhanced mitochondrial potential, shown using high-resolution respirometry. hiPSCs also produced higher levels of secreted proteins, including growth factors and proteins involved in the inhibition of the immune system. The data indicate that reprogramming of fibroblasts to hiPSCs produces important differences in cytoplasmic and mitochondrial proteins compared to hESCs, with consequences affecting growth and metabolism. This study improves our understanding of the molecular differences between hiPSCs and hESCs, with implications for potential risks and benefits for their use in future disease modelling and therapeutic applications.