Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling

  1. Henning Mühlenbeck
  2. Yuko Tsutsui
  3. Mark A Lemmon
  4. Kyle W Bender  Is a corresponding author
  5. Cyril Zipfel  Is a corresponding author
  1. Institute of Plant and Microbial Biology, Zürich-Basel Plant Science Center, University of Zürich, Switzerland
  2. Department of Pharmacology, Yale University School of Medicine, United States
  3. Yale Cancer Biology Institute, Yale University West Campus, United States
  4. The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, United Kingdom
5 figures, 5 tables and 1 additional file

Figures

Figure 1 with 1 supplement
EFR facilitates BIK1 trans-phosphorylation by BAK1 non-catalytically.

The kinase domains of coRK BAK1 and the RKs BRI1 and EFR were tagged with RiD domains and purified from E. coli λPP cells. (A) Recombinantly expressed RiD-tagged kinase domains were mixed together at equimolar ratios (2 µM), with or without addition of 10 µM Rap as well as 10 mM MgCl2 and 1 mM AMP-PNP. (B) RK and coRK were mixed at an equimolar ratio at 50 nM, kinase-dead BIK1D202N substrate was added at 500 nM. Reactions were carried out at RT for 10 min with 0.5 μCi [γ-³²P]ATP, 100 μM ATP and 2.5 mM each of MgCl2 and MnCl2. Addition of 1 μM Rap enhanced transphosphorylation of BIK1 by EFR and BRI1. Kinase-dead BRI1 failed to enhance BIK1 transphosphorylation, but kinase-dead EFR retained some ability to do so. A similar trend was observed for (auto)phosphorylation of BAK1 itself. (C) Quantification of band intensities over three independent experiments of which a representative is shown in B.

Figure 1—figure supplement 1
EFRY836F compromises ligand-induced receptor complex activation.

Two-week old seedlings were mock treated or treated with 1 µM elf18 for 10 min. Immunoprecipitation was then performed with anti-GFP, and the resulting immunoprecipitates probed for BAK1 S612 phosphorylation. Phosphorylated BAK1 was found to co-immunoprecipitate with WT EFR-GFP but hardly with EFRY836F-GFP, indicating ligand-induced receptor complex activation.

Figure 2 with 3 supplements
EFRY836F and EFRSSAA impair the active kinase conformation, which is required for signaling function.

(A) (left) HDX-MS results for unphosphorylated EFR and EFRY836F protein. The difference in percent H/D exchange in wild type EFR and EFRY836F is expressed as the Δ%EX (wild type EFR – EFRY836F), with the positive and negative Δ%EX indicating more stabilized and destabilized regions in EFRY836F, respectively, compared to wild-type EFR. The Δ%EX values at different labeling time points are shown as colored lines, as indicated in the figure. The horizontal dotted black lines indicate the 98% confidence interval for the Δ%EX data (±7.18%, corresponding to ±0.4 Da difference between wild type and Y836F percent exchange) calculated as described previously (Houde et al., 2011). Regions with Δ%EX values that exceed this confidence limit are indicated as colored bars in the figure, including the β3-αC loop (orange), the catalytic loop plus part of αE (purple), and the A-loop (blue). These regions are colored in the AlphaFold2-derived model of the EFR kinase domain shown at right, in which Y836 is shown as a purple sphere. All data are the average of three independent biological repeats (n=3) with three technical repeat experiments each. A summary of the HDX-MS analysis is presented in Table 3. (B) HDX-MS analysis of representative peptides from regions with significantly different HD exchange. Frames are color-coded according to regions in A. Amino acid range of the peptides in full length EFR are indicated in the top left corner and the sequence below. (C, D) Secondary site mutation EFR F761[H/M] partially restores function of EFRY836F (C) and EFRSSAA (D). Full length EFR and its variants were expressed transiently in N. benthamiana and their function was tested in an oxidative burst assay. EFR F761H partially restored oxidative bursts of EFRY836F and EFRSSAA. Outliers are in indicated by asterisk in addition to the outlier itself and are included in statistical analysis; Statistical test: Kruskal-Wallis test (p<2.2*10–16 in C, p=1.163*10–7 in D), Dunn’s post-hoc test with Benjamin-Hochberg correction (p ≤ 0.05) Groups with like lowercase letter designations are not statistically different.

Figure 2—figure supplement 1
VIa-Tyr forms H-bonds with the αC-β4 loop in various predicted and solved structures.

Solved structures were retrieved from PDB. AlphaFold2 models for kinases in their active conformation were retrieved from Faezov and Dunbrack, 2023. BAK1 and EFR models were predicted by AlphaFold2, using the complete intracellular domain. H-bonds were predicted in ChimeraX and distances are indicated.

Figure 2—figure supplement 2
Rational design of activating mutations in EFR and screen for functional recovery of EFRY836F.

(A) Alignments of EFR with human kinases containing oncogenic, kinase activating mutations that stabilize the αC-helix-in active-like conformation (described in Foster et al., 2016; Hu et al., 2015). Homologous sites in EFR are indicated by arrows with the residue number. (B) Structural model of the EFR kinase domain from AlphaFold2 with homologous sites identified in the sequence alignment from A highlighted in teal (missense mutation) or red (deletion). EFR Y836 at the C-terminal end of the αE-helix is colored purple. (C) Screening of the homology-based putatively activating EFR mutations for restoration of EFRY836F function in N. benthamiana. All putative activating mutations were functional at WT-like level except EFRΔNLLKH. Only EFRF761[H/M] could functionally recover EFRY836F as the oxidative burst was partially restored. (D) EFRL873E showed a WT-like oxidative burst but EFRL873E/Y836F did not restore the oxidative burst. Outliers are in indicated by asterisk in addition to the outlier itself and are included in statistical analysis; Statistical test: Kruskal-Wallis test (p=9.319*10–6 in C, p=0.01242 in D), Dunn’s post-hoc test with Benjamin-Hochberg correction (p ≤ 0.05) Groups with like lowercase letter designations are not statistically different.

Figure 2—figure supplement 3
EFR A-loop phosphorylation sites may coordinate with basic residues from the β3-αC loop and αC-helix.

(A) In PKA (1ATP), the A-loop phosphorylation on T197 coordinates with H87 from the αC-helix. (B) In EFR (AlphaFold2 (AF2) model), there are two basic residues extending downwards from β3-αC loop (H748) and αC-helix (K752) that may coordinate with A-loop phosphorylation on S887 or S888.

Figure 3 with 1 supplement
EFRF761H/Y836F and EFRF761H/SSAA recover receptor complex activation.

(A) In infection assays, GUS activity was high in the positive control efr-1 line. GUS activity level was reduced in the EFRWT and EFRF761H complementation lines, but much less so in the EFRY836F and EFRSSAA complementation lines. By contrast, EFRF761H/Y836F and EFRF761H/SSAA complementation lines displayed substantially repressed GUS activity. Each experiment was repeated three times with similar results. Outliers are indicated by an additional asterisk and included in statistical analysis. Statistical test: Kruskal-Wallis test (P=5.704*10–7), Dunn’s post-hoc test with Benjamin-Hochberg correction (P ≤ 0.05) Groups with like lowercase letter designations are not statistically different. (B) In IP kinase assays, ligand-induced interaction of EFRWT and EFRF761H with BAK1 increased transphosphorylation of BIK1D202N, but this was abolished for EFRY836F and EFRSSAA. Both EFRF761H/Y836F and EFRF761H/SSAA showed partially restored BIK1D202N trans-phosphorylation as well as BAK1 S612 phosphorylation (across four replicates for EFRF761H/SSAA and in two out of four replicates for EFRF761H/Y836F). Samples were also probed for MAPK phosphorylation for effective ligand treatment. Treatment: 100 nM elf18 for 10 min. (C) Quantification of BIK1D202N band intensity observed in autoradiographs from the four independent replicates performed. Dotted red line indicates unchanged band intensity in mock vs. elf18 treatment.

Figure 3—source data 1

Raw data for autoradiography and immunoblotting in Figure 3B.

https://cdn.elifesciences.org/articles/92110/elife-92110-fig3-data1-v1.zip
Figure 3—figure supplement 1
Multiple immune signaling branches are partially restored in EFRF761H/Y836F and EFRF761H/SSAA.

Stable transgenic complementation lines in the Arabidopsis efr-1 background were generated and physiological experiments conducted in the T3 generation (except for EFRF761H /Y836F#5, which is a double insertion line in T2 generation). (A) In the oxidative burst assay, EFR F761H restored oxidative burst in EFRF761H/Y836F and EFRF761H/SSAA complementation lines. Two independent experiments were merged into one graph as WT controls showed comparable total oxidative burst. A third independent experiment was performed with similar results. Outliers are indicated by an additional asterisk and included in statistical analysis. Statistical test: Kruskal-Wallis test (p<2.2*10–16), Dunn’s post-hoc test with Benjamin-Hochberg correction (p ≤ 0.05) Groups with like letter designations are not statistically different. Like oxidative burst assays, EFR F761H restored SGI (B) and MAPK activation (C) in EFRF761H/Y836F and EFRF761H/SSAA complementation lines. For SGI assays, four independent experiments wtih 5 nM elf18 treatment are shown. Outliers are indicated by an additional asterisk and included in statistical analysis. Statistical test: Kruskal-Wallis test (p<2.2 *10–16), Dunn’s post-hoc test with Benjamin-Hochberg correction (p ≤ 0.05) Groups with like letter designations are not statistically different. For MAPK activation assays, a representative experiment is shown. Similar results were obtained in three more experiments.

Figure 4 with 3 supplements
EFRF761H recovers BAK1Y403F function.

The cytoplasmic domains of BAK1 and EFR variants with fused RiD-tags were transiently expressed in N. benthamiana and leaf discs were treated with Rap to induce dimerization. EFR and EFRF761H induced a similar total oxidative burst when BAK1 was co-expressed. The co-expression of BAK1Y403F and EFR diminished the oxidative burst, which was restored partially when EFRF761H was co-expressed. Outliers are indicated by an additional asterisk and included in statistical analysis. Statistical test: Kruskal-Wallis test (p<8.516 *10–7), Dunn’s post-hoc test with Benjamin-Hochberg correction (p ≤ 0.05) Groups with like letter designations are not statistically different.

Figure 4—figure supplement 1
Function of BAK1 Y403F is partially recovered by the secondary mutation I338H.

(A) The RiD system was utilized to test the recovery of BAK1 Y403F by transient expression in N. benthamiana. The Y403F mutation in BAK1 diminished the oxidative burst, whereas BAK1 I338H displayed near WT-like responses. Combining the I338H and Y403F mutations, however, led to a partial recovery of oxidative burst. Outliers are indicated by an additional asterisk and included in statistical analysis. Statistical test: Kruskal-Wallis test (p<2.247 *10–11), Dunn’s post-hoc test with Benjamin-Hochberg correction (p ≤ 0.05) Groups with like letter designations are not statistically different. (B) SDS-PAGE analysis of protein levels in experiments 2 and 3 of A is shown. Protein accumulation data for experiment 1 was not collected.

Figure 4—figure supplement 2
EFR F761H accelerates the onset of the oxidative burst but requires the catalytic activity of BAK1.

(A) Quantification of the time until the oxidative burst reaches its half maximum from experiments presented in Figure 2B. Both putative activating mutations, F761H and F761M accelerate the onset of the oxidative burst. (B) Time resolved oxidative burst assay. Presented curves are from replicate number three as a representative example. Graphs in A and B are based on data presented in Figure 2B. Error bars represent standard error of the mean (n=4). (C) EFR F761H requires the catalytic activity of BAK1 to induce the oxidative burst. Data from three independent experiments is merged in one graph. (D) Protein accumulation of the RiD-tagged protein related to panel C. Statistical analysis in A and C: Outliers are indicated by an additional asterisk and included in statistical analysis. Statistical test: Kruskal-Wallis test (p=1.686*10–8 in A, p=5.89910–8 in C), Dunn’s post-hoc test with Benjamin-Hochberg correction (p ≤ 0.05) Groups with like letter designations are not statistically different.

Figure 4—figure supplement 3
Protein accumulation for the oxidative burst assay in Figure 4.

Leaf discs were collected after the oxidative burst assay and protein was extracted by boiling in SDS-loading buffer followed by immunoblotting. Non-infiltrated leaf discs served as negative control.

Figure 5 with 2 supplements
Related EFR kinases from LRR-RK XIIa in the Arabidopsis genus can function independent of their calatytic activity.

(A) Phylogenetic analysis of LRR-RK subfamily XIIa. Selected LRR-RK XIIa kinase domains are labeled and highlighted with purple points. The EFR-like clade contains all Arabidopsis XIIa kinases except FLS2 and XIIa2 and also selected XIIa kinases from Arabidopsis lyrata and Brassica rapa. (B, C) The ectodomain of EFR was fused to the transmembrane and intracellular domain of selected LRR-RK XIIa members to create elf18-responsive chimeras for testing the immune signaling function and catalytic dependency of the related kinase domains. The chimeras were transiently expressed in N. benthamiana and tested in oxidative burst assays. All Arabidopsis LRR-RK XIIa members induced an oxidative burst except XIIa2, the closest FLS2 related kinase in the subfamily. Catalytic dependency of the kinase domains appears to vary from kinase to kinase, with catalytically dead versions of EFR, FEXL1 and XIIa5 inducing a WT-like oxidative burst and XPS1 and XIIa6 displaying a reduced oxidative burst. FLS2 kinase dead exhibited a diminished oxidative burst. Experiments were repeated three times with similar results.

Figure 5—figure supplement 1
XIIa5D839N exhibits largely XIIa5WT-like characteristics.

(A, B) Catalytic site mutation of XIIa5 exhibited the least delayed onset of oxidative burst. In A, quantification of the time to reach the half maximum of the oxidative burst is shown. The underlying data are the same as used for total oxidative burst in the main figure. In B, the actual oxidative burst curves are presented as average of six individual plants transiently expressing the indicated chimeric protein. Error bars represent standard error of the mean (n=6). (C) A catalytic site mutation of XIIa5 did not negatively affect BIK1 trans-phosphorylation or BAK1 autophosphorylation. Experiments were performed as described in Figure 1. (D) Quantification of band intensities on autoradiographs from three independent experiments are shown. BRI1D1009N and EFRD849N displayed results similar to Figure 1B and C. In contrast to EFRD849N, for which BIK1 and BAK1 relative band intensities slightly decreased compared to wild type EFR, BIK1D202N and BAK1 relative band intensities were wild-type-like for XIIa5D839N.

Figure 5—figure supplement 2
Protein accumulation of EFR-XIIa chimeras in N. benthamiana.

All constructs exhibited detectable protein accumulation in transiently transformed N. benthamiana leaves. Similar protein accumulation was observed in 3 replicates for (A). Protein accumulation for constructs in (B) was tested once.

Tables

Table 1
Homology-based design of putative intragenic suppressor mutations for EFR.

The list contains the residue number of EFR and the analogous oncogenic mutation in BRAF, as well as a short description of the mode of action of the oncogenic mutation. See Figure 2—figure supplement 1B for structural locations.

EFR mutationAnalogous oncogenic mutationMode of actionSource
L743FBRAF L485FExtended hydrophobic interaction network along the αC-helixHu et al., 2015
F761[H/M]BRAF L505[F/H/M]Enforcement of hydrophobic interactions in the regulatory spineHu et al., 2015
ΔNLLKHBRAF ΔNVTAPShortening of β3-αC-helix loop, pulling ‘in’ the αC-helixFoster et al., 2016
L873EBRAF V600EUpward bending of C-terminal αC-helix endHu et al., 2015
Table 2
Protein expression conditions.
ProteinT after induction [°C]t of expression [h]pH of extraction buffer
For in vitro kinase assay
EFR/EFR D849N3048.0
BAK13048.0
BRI1/BRI1 D1009N18Over night8.0
FLS2/FLS2 D997N18Over night8.0
BIK1 D202N18Over night7.5
For HDX-MS
EFR/EFR Y836F3038.0
Table 3
Summary table of HDX-MS analysis.
Data SetWild-type EFREFRY836F
HDX reaction details20 mM HEPES, 100 mM NaCl, pD 7.420 mM HEPES, 100 mM NaCl, pD 7.4
HDX time course0, 10, 60, 600, 3600, and 7200 s0, 10, 60, 600, 3600, and 7200 s
HDX control samples8 M urea-D4 for fully deuterated standard8 M urea-D4 for fully deuterated standard
Back-exchange46%49%
# of Peptides143153
Sequence coverage100%100%
Ave peptide length / Redundancy12.7/5.4413.3/6.06
Replicatesn=3 biological repeats (3 technical/n)n=3 biological repeats (3 technical/n)
Repeatability (Ave SD)0.129 Da (2.28 %)0.111 Da (2.09 %)
Significant differences in HDX (98% CL)0.395 Da (7.18 %)
Table 4
Extinction coefficients and molecular weights retrieved from ProtParam and used for determination of protein concentration.
ProteinExtinction coefficient (reduced state)[Abs 0.1% (=1 g/l)]Molecular weight[kDa]
FKBP-EFR-mEGFP7.4080
FKBP-BRI1-mEGFP8.2683
FKBP-FLS2-mEGFP6.5679
FKBP-XIIa5-mEGFP7.5979.5
FRB-BAK115.0755
6xHis-TEV-BIK1D202N9.4547
6xHis-TEV-EFR(684–1031)6.9741.5
Appendix 1—key resources table
Reagent type (species) or resourceDesignationSource or referenceIdentifiersAdditional information
Strain, strain background (Arabidopsis thaliana)Col-0therwild-type ecotype
Strain, strain background (Nicotiana benthamiana)WTLab stockWild-type strain
strain, strain background (Escherichia coli)BL21(DE3) pLPPAmid BiosciencesCat#: BLPP-201Co-expression of
lambda phosphatase
Strain, strain background (Escherichia coli)BL21(DE3)-V2R-pACYC LamPPMID: 20436473Co-expression of
lambda phosphatase
Strain, strain background (Agrobacterium tumefaciens)GV3101Lab stock
Strain, strain background (Arabidopsis thaliana)efr-1PMID: 16713565
Genetic reagent (Arabidopsis thaliana)EFR-GFPThis paperSee Materials and
methods
Genetic reagent (Arabidopsis thaliana)F761H#2This paperSee Materials and
methods
Genetic reagent (Arabidopsis thaliana)F761H#7This paperSee Materials and
methods
Genetic reagent (Arabidopsis thaliana)Y836F#1This paperSee Materials
and methods
Genetic reagent (Arabidopsis thaliana)Y836F#4This paperSee Materials and
methods
Genetic reagent (Arabidopsis thaliana)F761H/Y836F#1This paperSee Materials and
methods
Genetic reagent (Arabidopsis thaliana)F761H/Y836F#5This paperSee Materials and
methods
Genetic reagent (Arabidopsis thaliana)SSAA#2This paperSee Materials
and methods
Genetic reagent (Arabidopsis thaliana)SSAA#7This paperSee Materials
and methods
Genetic reagent (Arabidopsis thaliana)F761H/SSAA#2This paperSee Materials
and methods
Genetic reagent (Arabidopsis thaliana)F761H/SSAA#7This paperSee Materials
and methods
Sequence-based reagentEFR-fThis paperPCR primeratcgGAAGACaaAATGA
AGCTGTCCTTTTCACTTG
Sequence-based reagentEFR Y836F-fThis paperPCR primerggagtTtctgcacgtt
cattgtcatgaccctgta
Sequence-based reagentEFR SSAA-fThis paperPCR primerGtttgctgctgctggt
gtcagaggcaccat
Sequence-based reagentEFR F761H-fThis paperPCR primeracgatgtcgtatacccttgt
gggtttcacattccgccata
Sequence-based reagentEFR F761M-fThis paperPCR primertacgatgtcgtatacccttc
atggtttcacattccgccata
Sequence-based reagentEFR V845F-fThis paperPCR primergcttaatatcacagtgagc
gaaagggtcatgacaatgaacgtg
Sequence-based reagentEFR L743F-fThis paperPCR primergctttaggaggttgaaaac
tttaaccgcgacgagttta
Sequence-based reagentEFR L873E-fThis paperPCR primerctcagGAGctctataaata
cgatcgagaatcctttcta
Sequence-based reagentEFR dNLLKH-fThis paperPCR primertaaagttttgggagcgacga
aaagctttatggcggaatgtg
Sequence-based reagentEFR D849N-fThis paperPCR primercactgtAatattaagcca
agcaacattcttctagacgat
Sequence-based reagentBAK1-fThis paperPCR primeratcgGAAGACaaAATGGA
ACGAAGATTAATGATCC
Sequence-based reagentBAK1 Y403F-fThis paperPCR primercttgcgtttttacatgat
cattgcgacccaaaga
Sequence-based reagentBAK1 I338H-fThis paperPCR primergagatgCAtagtatggcg
gttcacagaaacttgct
Sequence-based reagentBAK1 D416N-fThis paperPCR primercatcgaAatgtgaaagctg
caaatattttgttggatgaag
Sequence-based reagentEFRprom-fThis paperPCR primeratcgGgtctctTACGCGTCTC
aGTAGatctagacgat
taagtaattgagca
Sequence-based reagentBAK1prom-fThis paperPCR primeratcgGgtctctTACGCGTCTCa
CCTAtgtcgtgaaaagggcac
Sequence-based reagentXIIa2_Tmicd-fThis paperPCR primeratcgGCTCTTCgAAGGTT
CTTCTACCGGTTCTGTTAT
Sequence-based reagentXIIa3_Tmicd-fThis paperPCR primeratcgGCTCTTCgAAGG
TTGCGATTGGGGTCA
Sequence-based reagentXIIa4_Tmicd-fThis paperPCR primeratcgGCTCTTCgAAGATAA
TCACCATTTGTGTCAGTG
Sequence-based reagentXIIa5_Tmicd-fThis paperPCR primeratcgGCTCTTCgAAGGTT
GTGATTGGAGTTAGCGT
Sequence-based reagentXIIa6_Tmicd-fThis paperPCR primeratcgGCTCTTCgAAGGTTG
CAATTTTAGTAAGCATAGG
Sequence-based reagentFLS2_Tmicd-fThis paperPCR primeratcgGCTCTTCgAAGGTCA
TCCTGATTATTCTTGGATCA
GCCGCGGCaCTTCTTCTTGTCCTG
Sequence-based reagentAlXIIa_D850N-fThis paperPCR primeratcgGCTCTTCAGTa
ATATTAAGCCAAGCAACG
Sequence-based reagentBrXIIa_D846N-fThis paperPCR primeratcgGCTCTTCAGTaA
TCTTAAGCCAAGCAAC
Sequence-based reagentGmXIIa_D829N-fThis paperPCR primeratcgGCTCTTCAGTaATA
TTAAGCCAAGCAACATT
Sequence-based reagentPtXIIa_D848N-fThis paperPCR primeratcgGCTCTTCAGT
aatctgaagccaagcaa
Sequence-based reagentSlXIIa_D883N-fThis paperPCR primeratcgGCTCTTCAGTaATAT
AAAACCACAGAACATTCT
Sequence-based reagentXIIa2_D803N-fThis paperPCR primeratcgGCTCTTCAGTaATC
TCAAACCGAGCAATATCC
Sequence-based reagentXIIa3_D838N-fThis paperPCR primeratcgGCTCTTCACaATCT
TAAGCCAAGCAACATACT
Sequence-based reagentXIIa4_D856N-fThis paperPCR primer
atcgGCTCTTCAGTaATATT
AAGCCAAGCAATATTCTACTA
Sequence-based reagentXIIa5_D839N-fThis paperPCR primeratcgGCTCTTCAGCaA
TCTTAAGCCAAGCAACGT
Sequence-based reagentXIIa6_D840N-fThis paperPCR primeratcgGCTCTTCAGCaATC
TCAAGCCAAGCAACG
Sequence-based reagentFLS2icd_D997N-fThis paperPCR primeratcgGCTCTTCAGTaATC
TGAAGCCAGCTAATATACT
Sequence-based reagentFLS2_D997N-fThis paperPCR primerGTTCATTGTaATCTGAAGC
CAGCTAATATACTCCTTGACA
Sequence-based reagentEFR_ecto-fThis paperPCR primeratcgGGTCTCaAATGAAG
CTGTCCTTTTCACTTG
Sequence-based reagentEFR_SapIdom-fThis paperPCR primerGTTATGAgGAGCTTCAT
AGTGCAACAAGTCGCTTC
Sequence-based reagentEFR_Esp3Idom-fThis paperPCR primerTTCCCGTgTCTTTCGGG
AAGCTTTTGAACTTGC
Sequence-based reagentccdB cassette-fThis paperPCR primeratgcGGTCTCAGAAGgGAAG
AGCAAAGCTGAACGA
GAAACGTAAAAT
Sequence-based reagentpET28_lin-fThis paperPCR primertgagatccggctgctaa
Sequence-based reagentpETGG cloning cassette-fThis paperPCR primerAGAAGGAGATATACCAATGAGAGACCAAAGCTGAA
Sequence-based reagentP641-BsaI_mut1-fThis paperPCR primeragagacCaaagctgaacga
gaaacgtaaaatgatataaata
Sequence-based reagentP641-BsaI_mut2-fThis paperPCR primergccagtGgtctcttc
tggtcgtgactggg
Sequence-based reagent6xHis-FKBP-fThis paperPCR primeratcgCGTCTCtTACGGGTCT
CaAATGggcagcagccatcatcatc
atcatcacagcagcggcGGA
GTGCAGGTGGAAAC
Sequence-based reagent6xHis-FRB-fThis paperPCR primeratcgCGTCTCtTACGGGTCTCaA
ATGggcagcagccatcatcatcatcatc
acagcagcggcATCCT
CTGGCATGAGATGT
Sequence-based reagentEFR_icd (stop)-fThis paperPCR primeratcgCGTCTCtTACGGGTCT
CaAGGTaagaggaaaaag
aaaaacaatgcc
Sequence-based reagentEFR_icd (no stop)-fThis paperPCR primeratcgCGTCTCtTACGGGTCTCa
AGGTaagaggaaa
aagaaaaacaatgcc
Sequence-based reagentBAK1_icd (stop)-fThis paperPCR primeratcgCGTCTCtTACGGGTCTC
aAGGTgcttggtggcgaagg
Sequence-based reagentFLS2_icd (no stop)-fThis paperPCR primeratcgCGTCTCtTACGGGTCTCaAG
GTACCTGTTGCAAGAAA
AAAGAAAAAAAG
Sequence-based reagentBRI1_icd (no stop)-fThis paperPCR primeratcgGGTCTCaAGGT
GGTAGAGAGATGA
GGAAGAGA
Sequence-based reagentBRI1icd_D1009N-fThis paperPCR primeratcgGGTCTCaAaACATG
AAATCCAGTAATGTGTTGC
Sequence-based reagentEFR-rThis paperPCR primercgatGAAGACttCGAAcc
CATAGTATGCATGTCCG
Sequence-based reagentEFR Y836F-rThis paperPCR primergtgcagaAactccaaagc
tgaagccacatctat
Sequence-based reagentEFR SSAA-rThis paperPCR primergcagcagcaaactggttt
agaaaggattctcgatcg
Sequence-based reagentEFR F761H-rThis paperPCR primertatggcggaatgtgaaacc
cacaagggtatacgacatcgt
Sequence-based reagentEFR F761M-rThis paperPCR primertatggcggaatgtgaaaccat
gaagggtatacgacatcgta
Sequence-based reagentEFR V845F-rThis paperPCR primercacgttcattgtcatgaccctt
tcgctcactgtgatattaagc
Sequence-based reagentEFR L743F-rThis paperPCR primertaaactcgtcgcggttaaa
gttttcaacctcctaaagc
Sequence-based reagentEFR L873E-rThis paperPCR primertatagagCTCctgagcca
aaccaaagtcactaacatg
Sequence-based reagentEFR dNLLKH-rThis paperPCR primertcgtcgctcccaaaactttaa
ccgcgacgagtttattct
Sequence-based reagentEFR D849N-rThis paperPCR primerggcttaatatTacagtgag
ctacagggtcatgaca
Sequence-based reagentBAK1-rThis paperPCR primercgatGAAGACttAAGCc
cTTATCTTGGACCCGAGG
Sequence-based reagentBAK1 Y403F-rThis paperPCR primercatgtaaaaacgca
agccctcttgcagatccca
Sequence-based reagentBAK1 I338H-rThis paperPCR primerccatactaTGcatctca
acctctgtctggaactgc
Sequence-based reagentBAK1 D416N-rThis paperPCR primerctttcacatTtcgatgaata
atctttgggtcgcaatg
Sequence-based reagentEFRprom-rThis paperPCR primeratcgGgtctctCAGACGTCTC
aCATTgtcgattataaaaa
gataaaagaaaggtt
Sequence-based reagentBAK1prom-rThis paperPCR primeratcgGgtctctCAGACGTCT
CaCATTtttatcctcaagag
attaaaaacaaac
Sequence-based reagentXIIa2_Tmicd-rThis paperPCR primercgatGCTCTTCtCGAAccT
GAACTAGCTTCTCCTTGTG
Sequence-based reagentXIIa3_Tmicd-rThis paperPCR primercgatGCTCTTCtCGAAccA
CGTCTGGCTGTTCTCC
Sequence-based reagentXIIa4_Tmicd-rThis paperPCR primercgatGCTCTTCtCGAAccAG
TCTCCTCGTCTCTGAAA
Sequence-based reagentXIIa5_Tmicd-rThis paperPCR primercgatGCTCTTCtCGAAccACGCC
AAGTCGTTCTACTGGCTT
TAAAGAACCTCTCTCTGAT
TGAGATCAACTCCTTG
Sequence-based reagentXIIa6_Tmicd-rThis paperPCR primercgatGCTCTTCtCGAAccAC
GTCTAGGTGTTCTTCTG
Sequence-based reagentFLS2_Tmicd-rThis paperPCR primercgatGCTCTTCtCGAAccA
ACTTCTCGATCCTCGTTAC
Sequence-based reagentAlXIIa_D850N-rThis paperPCR primeratcgGCTCTTCAtACA
GTGAGCTACAGGGT
Sequence-based reagentBrXIIa_D846N-rThis paperPCR primeratcgGCTCTTCAtACAG
TGAGCTATTTGGTCAT
Sequence-based reagentGmXIIa_D829N-rThis paperPCR primeratcgGCTCTTCAtACA
GTGAACTACGGCCT
Sequence-based reagentPtXIIa_D848N-rThis paperPCR primeratcgGCTCTTCAtACa
atgaatgatgggcatg
Sequence-based reagentSlXIIa_D883N-rThis paperPCR primeratcgGCTCTTCAtACA
GTGAATCATGGGTGTT
Sequence-based reagentXIIa2_D803N-rThis paperPCR primeratcgGCTCTTCAtACAGT
GAACAACTTTTACAGGTGA
Sequence-based reagentXIIa3_D838N-rThis paperPCR primeratcgGCTCTTCATtGCAA
TGAGCTATAGGCTCATGA
Sequence-based reagentXIIa4_D856N-rThis paperPCR primeratcgGCTCTTCAtACA
GTGGGCTATAGGGTTGT
Sequence-based reagentXIIa5_D839N-rThis paperPCR primeratcgGCTCTTCAtGCAA
TGAGCTATAGGTTCATGACA
Sequence-based reagentXIIa6_D840N-rThis paperPCR primeratcgGCTCTTCAtGCAAT
GAGCTATAGGCTCATGAC
Sequence-based reagentFLS2icd_D997N-rThis paperPCR primeratcgGCTCTTCAtACAA
TGAACGATGGGAAAACC
Sequence-based reagentFLS2_D997N-rThis paperPCR primerCTTCAGATtACAATGAAC
GATGGGAAAACCATATCCAGA
Sequence-based reagentEFR_ecto-rThis paperPCR primeratcgGGTCTCacTTCT
TTCTAACTGACAGAGGC
Sequence-based reagentEFR_SapIdom-rThis paperPCR primerTGAAGCTCcTCATAACT
TACCTTCTCATGGAACATCC
Sequence-based reagentEFR_Esp3Idom-rThis paperPCR primerGAAAGAcACGGGAAGT
TCTCCACTCAACATATTTGTTT
Sequence-based reagentccdB cassette-rThis paperPCR primertacgGGTCTCACGAAGA
AGAGCactggctgtgtataaggga
Sequence-based reagentpET28_lin-rThis paperPCR primerggtatatctccttct
taaagttaaaca
Sequence-based reagentpETGG cloning cassette-rThis paperPCR primerAGCAGCCGGATCTCAAAGCAGAGACCACTGGC
Sequence-based reagentP641-BsaI_mut1-rThis paperPCR primercagctttGgtctctcg
tacggcctcctgt
Sequence-based reagentP641-BsaI_mut2-rThis paperPCR primeragagacCactggctgtg
tataagggagcctga
Sequence-based reagent6xHis-FKBP-rThis paperPCR primeratcgCGTCTCtCAGAGGTC
TCaACCTGAGCCGCTTTCC
Sequence-based reagent6xHis-FRB-rThis paperPCR primeratcgCGTCTCtCAGAGGTCT
CaACCTGAGCCGCTCTTT
Sequence-based reagentEFR_icd (stop)-rThis paperPCR primeratcgCGTCTCtCAGAGGTCTC
aAAGCttacatagtatgcatgtccgtatt
Sequence-based reagentEFR_icd (no stop)-rThis paperPCR primeratcgCGTCTCtCAGAGGTCTC
aAAGCttacatagtatgcatgtccgtatt
Sequence-based reagentBAK1_icd (stop)-rThis paperPCR primeratcgCGTCTCtCAGAGGTC
TCaAAGCttatcttggacccgaggg
Sequence-based reagentFLS2_icd (no stop)-rThis paperPCR primeratcgCGTCTCtCAGAGGTCTCaC
GAAccAACTTCTCGATCCTCGTTACG
Sequence-based reagentBRI1_icd (no stop)-rThis paperPCR primeratcgGGTCTCaCGAAccTAA
TTTTCCTTCAGGAACTTCTTTTATA
Sequence-based reagentBRI1icd_D1009N-rThis paperPCR primeratcgGGTCTCaGTtTCTGT
GGATGATATGCGGAC
AntibodyGFP-HRP; mouse monoclonalSanta Cruz BiotechnologyCat#: sc-9996Dilution: 1:1000
AntibodyBAK1; rabbit polyclonalPMID: 21693696Dilution: 1:10000
AntibodyBAK1 pS612; rabbit polyclonalPMID: 30177827Dilution: 1:2000
AntibodyFKBP12; mouse monoclonalSanta Cruz BiotechnologyCat#: sc-133067Dilution: 1:500
Antibodyp44/42; rabbit polyclonalCell Signaling TechnologyCat#: 9101Dilution: 1:1000
AntibodyAnti-rabbit-HRP; goat polyclonalSigma-AldrichCat#: A0545Dilution: 1:10000
AntibodyAnti-mouse-HRP; goat polyclonalSigma-AldrichCat#: A0168Dilution: 1:5000
Recombinant DNA reagentp641-EFRprom(BsaI)This paperSee Materials and methods
Recombinant DNA reagent35 S_omegaEnhancerPMID: 21364738
Recombinant DNA reagentpICH41258-nMyr-FKBPPMID: 33964457
Recombinant DNA reagentpICH41258-nMyr-FRBPMID: 33964457
Recombinant DNA reagentpICSL01003-GFPPMID: 21364738
Recombinant DNA reagentpICSL01003-mEGFPMark Youles, TSL
Recombinant DNA reagentHSP18tMark Youles, TSL
Recombinant DNA reagentp641-6xHis-FKBPThis paperSee Materials and methods
Recombinant DNA reagentp641-6xHis-FRBThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFRThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR Y836FThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR SSAAThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR F761HThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR F761MThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR dNLLKHThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR L743FThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR L873EThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR F761H Y836FThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR F761M Y836FThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR dNLLKH Y836FThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR L743F Y836FThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR L873E Y836FThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR D849NThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR F761H D849NThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR F761H SSAAThis paperSee Materials and methods
Recombinant DNA reagentpICSL01005-EFR F761M SSAAThis paperSee Materials and methods
Recombinant DNA reagentpICH41308-BAK1This paperSee Materials and MethodsSee Materials and methods
Recombinant DNA reagentpICH41308-BAK1 Y403FThis paperSee Materials and MethodsSee Materials and methods
Recombinant DNA reagentpICSL86955PMID: 21364738
Recombinant DNA reagentpICSL86955-pEFR::EFR-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR Y836F-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR SSAA-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR F761H-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR F761M-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR dNLLKH-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR L743F-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR L873E-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR F761H Y836F-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR F761M Y836F-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR dNLLKH Y836F-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR L743F Y836F -GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR Y836F L873E-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR F761H SSAA-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-pEFR::EFR F761M SSAA-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentp641PMID: 31300661
Recombinant DNA reagentp641-EFR_icdThis paperSee Materials and methods
Recombinant DNA reagentp641-EFR F761H_icdThis paperSee Materials and methods
Recombinant DNA reagentp641-EFR D849N_icdThis paperSee Materials and methods
Recombinant DNA reagentp641-EFR F761H D849N_icdThis paperSee Materials and methods
Recombinant DNA reagentp641-BAK1_icdThis paperSee Materials and methods
Recombinant DNA reagentp641-BAK1 Y403F_icdThis paperSee Materials and methods
Recombinant DNA reagentp641-BAK1 D416N_icdThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-ccdB-GFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa2icd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa2 D803N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa3icd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa3 D838N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa4icd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa4 D856N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa5icd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa5 D839N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa6icd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XIIa6 D840N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-FLS2icd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-FLS2 D997N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-EFRicd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-EFR D849N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XA21icd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-XA21 D803N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Aralyicd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Araly D850N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Brapaicd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Brapa D846N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Solycicd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Solyc D883N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Poptricd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Poptr D848N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-Glymaicd-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL86955-35S::EFRecto-GlymaD829N-mEGFP::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpETGGThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FKBP-EFRicd-mEGFPThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FKBP-EFRicd D849N-mEGFPThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FKBP-BRI1-mEGFPThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FKBP-BRI1 D1009N-mEGFPThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FKBP-FLS2-mEGFPThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FKBP-FLS D997N-mEGFPThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FKBP-XIIa5-mEGFPThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FKBP-XIIa5 D839N-mEGFPThis paperSee Materials and methods
Recombinant DNA reagentpETGG-6xHis-FRB-BAK1This paperSee Materials and methods
Recombinant DNA reagentpET28a(+)–6xHis-BIK1 D202NThis paperSee Materials and methods
Recombinant DNA reagentpC1a1-35S::FRB-BAK1_icd::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpC1a1-35S::FRB-BAK1 Y403F_icd::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpC1a1-35S::FRB-BAK1 D416N_icd::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpC1a2-35S::FKBP-EFR_icd::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpC1a2-35S::FKBP-EFR F761H_icd::HSP18tThis paperSee Materials and methods
Recombinant DNA reagentpICSL4723PMID: 21364738See Materials and methods
Recombinant DNA reagentpICSL4723-FRB-BAK1-FKBP-EFRThis paperSee Materials and methods
Recombinant DNA reagentpICSL4723-FRB-BAK1 D416N-FKBP-EFRThis paperSee Materials and methods
Recombinant DNA reagentpICSL4723-FRB-BAK1-FKBP-EFR F761HThis paperSee Materials and methods
Recombinant DNA reagentpICSL4723-FRB-BAK1 D416N-FKBP-EFR F761HThis paperSee Materials and methods
Recombinant DNA reagentpICSL4723-FRB-BAK1 Y403F-FKBP-EFRThis paperSee Materials and methods
Recombinant DNA reagentpICSL4723-FRB-BAK1 Y403F-FKBP-EFR F761HThis paperSee Materials and methods

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  1. Henning Mühlenbeck
  2. Yuko Tsutsui
  3. Mark A Lemmon
  4. Kyle W Bender
  5. Cyril Zipfel
(2024)
Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling
eLife 12:RP92110.
https://doi.org/10.7554/eLife.92110.4