The effect of combining antibiotics on resistance: A systematic review and meta-analysis

  1. Berit Siedentop  Is a corresponding author
  2. Viacheslav N Kachalov
  3. Christopher Witzany
  4. Matthias Egger
  5. Roger D Kouyos
  6. Sebastian Bonhoeffer  Is a corresponding author
  1. Institute of Integrative Biology, Department of Environmental Systems Science, ETH Zürich, Switzerland
  2. Department of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, University of Zurich, Switzerland
  3. Institute of Medical Virology, University of Zurich, Switzerland
  4. Institute of Social and Preventive Medicine (ISPM), University of Bern, Switzerland
  5. Population Health Sciences, University of Bristol, United Kingdom
  6. Centre for Infectious Disease Epidemiology and Research, Faculty of Health Sciences, University of Cape Town, South Africa
17 figures, 12 tables and 2 additional files

Figures

Study selection.
Measuring antibiotic resistance is not the current main objective of randomised controlled trials (RCTs).

(A) Distribution of the publishing year of included studies. The number of studies published per year is shown, with the red vertical line indicating the median of the distribution. (B) Calculated statistical power [%] of included studies to detect an odds ratio of 0.5. The power calculations were based on equal treatment arm sizes. For the calculations, the treatment arm with the higher number of patients of the respective studies was used.

Forest plot of acquisition of bacterial resistance stratified by the reason antibiotics were administered.

The colouring indicates the number of antibiotics that were compared in each study. (A) The overall pooled OR of all included studies. (B) The pooled OR of studies with at least one antibiotic in common in the treatment arms. UTI stands for urinary tract infection, methicillin-resistant Staphylococcus aureus (MRSA) for methicillin-resistant Staphylococcus aureus, MAC for Mycobacterium avium complex, and BSI for blood stream infection.

Appendix 2—figure 1
Forest plot of de novo emergence of bacterial resistance stratified by the reason antibiotics were administered.

The colouring indicates the number of antibiotics that were compared in each study. (A) The overall pooled OR of all included studies. (B) The pooled OR of studies with at least one antibiotic in common in the treatment arms. MRSA stands for methicillin-resistant Staphylococcus aureus, MAC for Mycobacterium avium complex, and BSI for blood stream infection.

Appendix 3—figure 1
Risk of bias summary for the two main outcomes: (A) Acquisition of resistance, (B) de novo emergence of resistance.
Appendix 4—figure 1
Sensitivity analysis based on model choice for the two main outcomes.

(A) Acquisition of resistance, (B) de novo emergence of resistance. Shown are the frequentist model estimates of model 1, and model 4 presented in Jackson et al., 2018 and a Bayesian estimate of model 4. UTI stands for urinary tract infection, MRSA for methicillin-resistant Staphylococcus aureus, and MAC for Mycobacterium avium complex.

Appendix 4—figure 2
Sensitivity analysis based on model choice for the two main outcomes restricted to studies with at least one common antibiotic in the comparator arms.

(A) Acquisition of resistance, (B) de novo emergence of resistance. Shown are the frequentist model estimates of model 1, and model 4 presented in Jackson et al., 2018 and a Bayesian estimate of model 4.

Appendix 5—figure 1
Funnel plots for the two main outcomes.

(A) Acquisition of resistance, (B) de novo emergence of resistance.

Appendix 8—figure 1
The calculated adequate treatment arm size for each study assuming to detect an odds ratio of 0.5 with 80% power in comparison to the actual treatment arm sizes.

The power calculations were performed using the upper confidence interval for the binomial probability of the treatment arm with fewer antibiotics.

Appendix 8—figure 2
Trial sequential analysis (TSA) output using 80% power, and 5% significance to detect a relative odds reduction of 50%: (A) acquisition of resistance.

(B) de novo emergence of resistance. No sufficient evidence on the development of resistance is supported, since the Z-curves do not cross the monitoring nor the futility boundaries, and the required sample size is not reached.

Appendix 9—figure 1
Forest plot of all-cause mortality.
Appendix 9—figure 2
Forest plot of mortality attributable to infection.
Appendix 9—figure 3
Forest plot of treatment failure.
Appendix 9—figure 4
Forest plot of treatment failure due to a change of resistance against the study drugs.
Appendix 9—figure 5
Forest plot of alterations of the prescribed treatment due to adverse events.
Appendix 9—figure 6
Forest plot of acquisition of resistance against non-administered antibiotics.
Appendix 9—figure 7
Forest plot of de novo emergence of resistance against non-administered antibiotics.

Tables

Appendix 3—table 1
Justification for extraction of resistance development.

The definitions of resistance development are stated as given by the study authors. In case no explicit definition was given, we state a justification for extraction and indicate it with (*). Note that for data extraction for the publications of Dickstein et al., 2020 and Pogue et al., 2021 additional publications of the same studies were consulted by Paul et al., 2018 and Kaye et al., 2023, respectively. Resistance breakpoints are stated in case numerical values were given in the respective studies. See Supplementary file 1 for which antibiotics the studies tested and reported extractable resistance data.

StudyDefinition of resistance development given by study authors or justification for extraction
Bender et al., 1979Susceptibility testing for gentamicin of the flora was performed at randomisation and twice weekly after with the Kirby-Bauer disk technique and microtiter minimal inhibitory concentration. (*)
Black et al., 1982Patients were infected with a known strain and all stool cultures and rectal swabs were plated and tested for trimethoprim resistance. (*)
Chaisson et al., 1997Testing of isolates to susceptibility for clarithromycin, ethambutol, and clofazimine was performed before the entry of the study and monthly for 6 mo in broth by the method of Heifets.(*)
Cometta et al., 1994All microorganisms were sensitive to imipenem at randomisation and follow-up cultures were performed. (*)
Dawson et al., 2015Susceptibility testing at randomisation and for the following cultures by rapid testing. Susceptibilities to isoniazid, rifampicin, and fluoroquinolones were determined by line probe assay. (*)
Dekker et al., 1987At admission, cultures were performed and surveillance cultures were done twice a week. Gram-negative bacilli were tested for antibiotic susceptibility. The minimal inhibitory concentrations were assessed by agar dilution technique. An MIC of ≥2 µg/mL was considered resistant for ciprofloxacin, an MIC of ≥4 µg/mL for trimethoprim, and an MIC ≥75 µg/mL for sulfamethoxazole. (*)
Dickstein et al., 2020Development of a new colistin-resistant (ColR) isolates within 28 d from study enrolment. To be considered a new ColR isolate, the ColR isolate had to be detected on day 7 or later in patients for whom the baseline isolate was colistin-susceptible, and for whom no ColR isolate was cultured from the rectal swab taken on day 1. Susceptibility was determined by broth microdilution. Colistin resistance was defined as an MIC >2 mg/L.
Dubé et al., 1997All available isolates were tested for susceptibility to clarithromycin. Patients were evaluated at the time of enrolment, 2 and 4 wk later, and then every 4 wk. Clarithromycin resistance was defined as detectable growth in a concentration of clarithromycin of 8 µg/mL. (*)
Durante-Mangoni et al., 2013The identification of a colistin-resistant Acinetobacter baumannii during treatment was defined as resistance emergence. Resistance was determined by the microdilution method and/or E-test.
Fournier et al., 1999Susceptibility testing was performed at study entry after 2 mo and classification was performed according to Heifets. (*)
Gerecht et al., 1989Emergence of resistance was defined as one cause of treatment failure. Emergence of resistance was classified as the detection of an infecting microorganism resistant to more than 4 μg/mL of gentamicin sulfate or more than 128 μg/mL of mezlocillin sodium during treatment while the patient shows indications of cholangitis.
Gibson et al., 1989Microbiological assessment of the blood was performed before treatment and 96 hr after treatment. (*)
Haase et al., 1984Susceptibility was assessed before therapy, during therapy, and after therapy. Susceptibility testing was performed with disk dilution method, and agar dilution method. Resistance results were reported for reinfections defined as the reappearance of infection with a different organism after completion of therapy. Resistance against norfloxacin and trimethoprim-sulfamethoxazole was defined as a larger inhibition zone diameter of 0.17 and 0.16 mm, respectively, or/and a MIC larger than 16 µg/mL and 3.4–64 µg/mL, respectively. (*)
Harbarth et al., 2015Susceptibility assessment was performed at baseline and at the end of treatment. Susceptibility was performed with a disc diffusion method phenotypically and genotypically. (*)
Hodson et al., 1987P. aeruginosa had to be sensitive at inclusion and resistance was measured and reported after 10 d of treatment. Sensitivity was determined by standard disc methods. (*)
Hoepelman et al., 1988Susceptibility was assessed before, during, and after treatment. Susceptibility testing was performed with the disc diffusion method and minimum inhibitor concentrations were assessed for blood cultures and patients with no response to treatment with the agar dilution technique. Resistance for the agar dilution technique was defined as an MIC of ≥32 µg/mL for ceftriaxone, ≥8 µg/mL for gentamicin, and ≥32 µg/mL for cefuroxime. For the disc diffusion method 30 µg ceftriaxone, 40 µg gentamicin, and 60 µg cefuroxime were used. If the zone of inhibition was ≤18 mm cultures were classified as ceftriaxone resistant and sensitive if the zone was ≥26 mm and intermediate in between. For gentamicin the values were ≤20 mm and ≥28 mm and for cefuroxime ≤20 mm and ≥28 mm, respectively.(*)
Hultén et al., 1997Susceptibility was assessed by E-test at inclusion and 12 wk after treatment determination. (*)
Iravani et al., 1981Susceptibility testing at baseline, during treatment and at follow-up. Testing was performed with Bauer’s disc diffusion method using 30 µg nalidixic acid, 1.25 µg trimethoprim, and 23.75 µg sulfamethoxazole. (*)
Jacobs et al., 1993Emergence of resistance was defined as treatment failure with resistance, i.e., bacteriological failure with the reisolation of original pathogen(s) resistant to the study antibiotic(s) after treatment.
Jo et al., 2021Susceptibility testing before treatment and after treatment by culture. (*)
Macnab et al., 1994Susceptibility testing before treatment and after around 90 doses. (*)
Markowitz et al., 1992Susceptibility was assessed by microdilution method before treatment and for the last continuous positive culture during treatment. Furthermore, susceptibility was assessed for relapse isolates and isolates phenotypically different from the initial one. (*)
Mavromanolakis et al., 1997Susceptibility was assessed before treatment, after 2 wk, at the end of treatment, and 2 wk after treatment by disk diffusion method. (*)
May et al., 1997Susceptibility was assessed at treatment start, after 2 mo, and in case of relapse by the Becton Dickinson method. (*)
McCarty et al., 1988Susceptibility was assessed at admission, every 4 d during treatment, and within 48 hr after treatment by broth microdilution method using the American Microscan Gram Negative-Panel. (*)
Menon et al., 1986Susceptibility was assessed before therapy, and after 1 and 2 wk after therapy. (*)
Miehlke et al., 1998Susceptibility was assessed before and after treatment by E-test. An MIC of ≤0.125 mg/L was considered clarithromycin sensitive and an MIC of ≥2 mg/L resistant. An MIC of ≤2 mg/L was considered amoxicillin susceptible and an MIC of ≥4 mg/L resistant. (*)
Parras et al., 1995Susceptibility was assessed at baseline and at the end of therapy by agar dilution method or automated microdilution methods. (*)
Parry et al., 1977Susceptibility was assessed before, during, after treatment, after 2 wk, and after 6 mo after treatment by Bauer’s method. (*)
Parry et al., 2007Susceptibility was assessed before therapy and after treatment by E-test, disk diffusion method. Ofloxacin was tested by disk diffusion method with a 5 µg and organisms were declared susceptible with a breakpoint ≤2 µg/mL and resistant with a breakpoint ≥8 µg/mL. Azithromycin was also tested with the disk diffusion method (15 µg disk), but no clear breakpoints were defined. Instead, azithromycin was determined by E-test according to the manufacture’s guidelines. (*)
Paul et al., 2015Development of resistance was defined as the acquisition of S. aureus resistant to any of the study drugs or vancomycin-resistant Enterococci.
Pogue et al., 2021Number of patients, who developed colistin resistance during therapy. Resistance was assessed with broth microdilution and declared as colistin-resistant with an MIC ≥4 mg/L.
Pujol et al., 2021Emergence of resistance to studying drugs during treatment according to EUCAST.
Rubinstein et al., 1995Resistance emergence was assessed by measuring MICs before, during, and after treatment. Disk diffusion testing was performed with disks of 30 µg ceftazidime, 30 µg ceftriaxone, and 10 µg tobramycin. An MIC ≤8 mg/L was considered susceptible for ceftazidime and ceftriaxone and a MIC ≥32 mg/L was considered resistant for ceftazidime and an MIC ≥64 mg/L for ceftriaxone. An MIC ≤4 mg/L was classified as susceptible for tobramycin, and an MIC ≥8 mg/L as resistant.
Schaeffer et al., 1981Susceptibility was assessed before therapy, after 7 d, and after 5 to 9 d after therapy by plating. Susceptibility testing was performed by plating 0.1 mL of culture on Mac Conkey agar containing 100 µg/mL cinoxacin or 1–24 µg/mL trimethoprim-sulfamethoxazole. Any growing culture was considered resistant and resistance tests were confirmed with standard agar sensitivity testing to a maximum concentration of 100 µg cinoxacin or 80–400 µg trimethoprim-sulfamethoxazole. (*)
Schaeffer and Sisney, 1985Susceptibility testing was performed before therapy, during therapy, and after 5 to 7 d after therapy by plating. 0.1 mL of cultures were plated on either Mueller-Hinton agar containing 10 µg/mL agar of norfloxacin or 1–24 µg/mL agar trimethoprim-sulfamethoxazole with 5% lysed red blood cells from the horse. Any growing culture was considered resistant and resistance tests were confirmed with tube dilution sensitivity testing to a maximum concentration of 100 µg/mL norfloxacin or 32–608 µg/mL trimethoprim-sulfamethoxazole. (*)
Smith et al., 1999Susceptibility was assessed at inclusion, and at the end of treatment by disk-susceptibility testing. An MIC of ≥100 µg/mL was considered resistant for azlocillin and resistant to tobramycin if the MIC was ≥8 µg/mL.(*)
Stack et al., 1998Susceptibility was assessed at baseline, and at 4 or 8 wk after treatment by E-test. Resistance was considered with bacterial growth at a drug concentration of >2 µg/mL for clarithromycin. (*)
Walsh et al., 1993Susceptibility was assessed at baseline and for organisms culturable after the end of therapy and a 2 wk follow-up period by a microtiter tube dilution technique. Organisms were declared resistant if the MIC was greater than 2 µg/mL for rifampicin, greater than 8 µg/mL for novobiocin, and greater than 2 µg/mL and 38 µg/mL for trimethoprim and sulfamethoxazole.
Winston et al., 1986Susceptibility of surveillance cultures was assessed at baseline, twice weekly during the study period and after study completion. Acquired organisms were defined as new organisms isolated during the study period, that were not present at baseline. An MIC ≤16 µg/mL was considered as sensitive for norfloxacin, polymyxin. For disc sensitivity testing cultures were considered sensitive to norfloxacin if a zone of ≥17 mm was present in a 10 µg norfloxacin disk. (*)
Winston et al., 1990New organisms that were isolated during the study period but had not been present before the study were defined as acquired organisms. Susceptibility tests were done by agar dilution method, or by antibiotic disks. An MIC of ≤4, 16, or 4 µg/mL for ofloxacin, polymyxin, or vancomycin was considered susceptible to the antibiotics, respectively. For ofloxacin additional disk sensitivity testing was performed. Susceptibility was declared if a zone of 16 mm or greater was present around a 5 µg disk of ofloxacin. (*)
Wurzer et al., 1997Susceptibility was assessed pre-treatment and between 4 and 6 wk of follow-up by agar dilution, and micro broth dilution. An MIC concentration of ≤2 µg/mL indicated susceptibility for clarithromycin, and an MIC above 2 µg/mL resistance. An MIC lower or equal to 0.125 µg/mL for amoxycilin was considered susceptible and classified resistant if above 0.125 µg/mL. (*)
Appendix 4—table 1
Summary of the results of the sub-group analyses stratifying according to the overall risk of bias for the two main outcomes.

Note that the listing of eligible studies also includes studies reporting zero cases in both treatment arms and were, therefore, not included in the statistical analysis.

Overall risk of biasOutcomeOR (95% CI)Study heterogeneity (I22)Eligible studies
Some concernsAcquisition of resistance0.71 (0.38–1.32)72%; 1.15Bender et al., 1979; Black et al., 1982; Cometta et al., 1994; Dawson et al., 2015; Dekker et al., 1987; Dickstein et al., 2020; Dubé et al., 1997; Fournier et al., 1999; Gerecht et al., 1989; Harbarth et al., 2015; Hodson et al., 1987; Hultén et al., 1997; Iravani et al., 1981; Jo et al., 2021; Markowitz et al., 1992; Mavromanolakis et al., 1997; May et al., 1997; McCarty et al., 1988; Menon et al., 1986; Miehlke et al., 1998; Parras et al., 1995; Parry et al., 2007; Parry et al., 1977; Rubinstein et al., 1995; Schaeffer and Sisney, 1985; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
Some concernsDe novo emergence of resistance0.49 (0.21–1.14)73%; 1.53Bender et al., 1979; Black et al., 1982; Cometta et al., 1994; Dawson et al., 2015; Dickstein et al., 2020; Dubé et al., 1997; Fournier et al., 1999; Gerecht et al., 1989; Harbarth et al., 2015; Hodson et al., 1987; Hultén et al., 1997; Iravani et al., 1981; Jo et al., 2021; Markowitz et al., 1992; May et al., 1997; McCarty et al., 1988; Miehlke et al., 1998; Parras et al., 1995; Parry et al., 1977; Rubinstein et al., 1995; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
HighAcquisition of resistance4.45 (1.67–11.81)57%; 1.11Chaisson et al., 1997; Gibson et al., 1989; Haase et al., 1984; Hoepelman et al., 1988; Jacobs et al., 1993; Macnab et al., 1994; Paul et al., 2015; Pogue et al., 2021; Schaeffer et al., 1981; Smith et al., 1999; Winston et al., 1990; Winston et al., 1986
HighDe novo emergence of resistance2.32 (0.65–8.28)60%; 1.28Chaisson et al., 1997; Gibson et al., 1989; Haase et al., 1984; Hoepelman et al., 1988; Jacobs et al., 1993; Macnab et al., 1994; Paul et al., 2015; Pogue et al., 2021; Smith et al., 1999
Appendix 6—table 1
Summary of the results of the predefined sub-group analyses for the outcome acquisition of resistance.

Note that the listing of eligible studies also includes studies reporting zero cases in both treatment arms, which are not included in the statistical analysis.

Sub-group AnalysisOR (95% CI)Study heterogeneity (I2; τ2)Eligible studies
Number of antibiotics administered:
1 vs 21.49 (0.77–2.88)76%; 1.70Bender et al., 1979; Black et al., 1982; Cometta et al., 1994; Dickstein et al., 2020; Durante-Mangoni et al., 2013; Gerecht et al., 1989; Gibson et al., 1989; Haase et al., 1984; Hodson et al., 1987; Hoepelman et al., 1988; Hultén et al., 1997; Iravani et al., 1981; Jacobs et al., 1993; Jo et al., 2021; Markowitz et al., 1992; Mavromanolakis et al., 1997; McCarty et al., 1988; Menon et al., 1986; Miehlke et al., 1998; Parry et al., 2007; Parry et al., 1977; Paul et al., 2015; Pogue et al., 2021; Pujol et al., 2021; Rubinstein et al., 1995; Schaeffer et al., 1981; Schaeffer and Sisney, 1985; Smith et al., 1999; Stack et al., 1998; Winston et al., 1990; Winston et al., 1986; Wurzer et al., 1997
2 vs 30.38 (0.08–1.78)74%; 1.63Chaisson et al., 1997; Dubé et al., 1997; Fournier et al., 1999; May et al., 1997; Walsh et al., 1993
Administration of additional non-antibiotic drugs:
Non-antibiotic drugs as part of treatment0.88 (0.21–3.66)82%; 3.00Bender et al., 1979; Dekker et al., 1987; Hultén et al., 1997; Miehlke et al., 1998; Parras et al., 1995; Stack et al., 1998; Winston et al., 1990; Winston et al., 1986; Wurzer et al., 1997
Non-antibiotic drugs administered if necessary1.07 (0.48–2.40)1%; 0.01Dickstein et al., 2020; Durante-Mangoni et al., 2013; Iravani et al., 1981; Jacobs et al., 1993; Pujol et al., 2021
Usage of the same dosage of antibiotics common to both treatment arms0.59 (0.30–1.18)73%; 1.20Bender et al., 1979; Chaisson et al., 1997; Cometta et al., 1994; Dickstein et al., 2020; Dubé et al., 1997; Durante-Mangoni et al., 2013; Fournier et al., 1999; Hultén et al., 1997; Jacobs et al., 1993; May et al., 1997; McCarty et al., 1988; Parry et al., 1977; Pogue et al., 2021; Pujol et al., 2021; Smith et al., 1999; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
Required comorbidity at study inclusion:
Yes1.23 (0.50–3.01)72%; 1.59Bender et al., 1979; Chaisson et al., 1997; Dekker et al., 1987; Dubé et al., 1997; Fournier et al., 1999; Gibson et al., 1989; Hodson et al., 1987; Jacobs et al., 1993; Markowitz et al., 1992; May et al., 1997; McCarty et al., 1988; Parry et al., 1977; Smith et al., 1999; Winston et al., 1990; Winston et al., 1986
No1.25 (0.55–2.86)80%; 2.02Black et al., 1982; Cometta et al., 1994; Dawson et al., 2015; Dickstein et al., 2020; Durante-Mangoni et al., 2013; Gerecht et al., 1989; Haase et al., 1984; Harbarth et al., 2015; Hoepelman et al., 1988; Hultén et al., 1997; Iravani et al., 1981; Jo et al., 2021; Macnab et al., 1994; Mavromanolakis et al., 1997; Menon et al., 1986; Miehlke et al., 1998; Parras et al., 1995; Parry et al., 2007; Paul et al., 2015; Pogue et al., 2021; Pujol et al., 2021; Rubinstein et al., 1995; Schaeffer et al., 1981; Schaeffer and Sisney, 1985; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
Gram-status
Negative1.14 (0.56–2.35)78%; 1.57Black et al., 1982; Dekker et al., 1987; Dickstein et al., 2020; Durante-Mangoni et al., 2013; Hodson et al., 1987; Hultén et al., 1997; Iravani et al., 1981; Jo et al., 2021; Mavromanolakis et al., 1997; McCarty et al., 1988; Menon et al., 1986; Miehlke et al., 1998; Parry et al., 2007; Parry et al., 1977; Pogue et al., 2021; Rubinstein et al., 1995; Schaeffer and Sisney, 1985; Smith et al., 1999; Stack et al., 1998; Winston et al., 1990; Winston et al., 1986; Wurzer et al., 1997
Positive0.44 (0.11–1.76)66%; 1.54Chaisson et al., 1997; Dubé et al., 1997; Fournier et al., 1999; Harbarth et al., 2015; Markowitz et al., 1992; May et al., 1997; Parras et al., 1995; Paul et al., 2015; Pujol et al., 2021; Walsh et al., 1993
Negative and positive3.38 (1.08–10.58)44%; 0.75Bender et al., 1979; Cometta et al., 1994; Gerecht et al., 1989; Gibson et al., 1989; Haase et al., 1984; Hoepelman et al., 1988; Jacobs et al., 1993; Schaeffer et al., 1981
Only resistances of antibiotics common to treatment arms0.39 (0.18–0.81)75%; 1.49Bender et al., 1979; Black et al., 1982; Chaisson et al., 1997; Cometta et al., 1994; Dawson et al., 2015; Dickstein et al., 2020; Dubé et al., 1997; Durante-Mangoni et al., 2013; Fournier et al., 1999; Hultén et al., 1997; Jacobs et al., 1993; Macnab et al., 1994; May et al., 1997; McCarty et al., 1988; Menon et al., 1986; Parry et al., 2007; Parry et al., 1977; Pogue et al., 2021; Pujol et al., 2021; Smith et al., 1999; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
Age of antibiotics since the conduction of the trial:
Youngest antibiotic is in the treatment arm with the lower number of antibiotics1.63 (0.66–4.03)76%; 2.17Black et al., 1982; Dawson et al., 2015; Dekker et al., 1987; Dubé et al., 1997; Gerecht et al., 1989; Gibson et al., 1989; Haase et al., 1984; Harbarth et al., 2015; Hodson et al., 1987; Hoepelman et al., 1988; Hultén et al., 1997; Jacobs et al., 1993; McCarty et al., 1988; Menon et al., 1986; Parras et al., 1995; Pujol et al., 2021; Schaeffer and Sisney, 1985; Smith et al., 1999; Stack et al., 1998; Winston et al., 1990; Winston et al., 1986
Youngest antibiotic is in the treatment arm with the higher number of antibiotics1.08 (0.49–2.42)66%; 0.91Chaisson et al., 1997; Dickstein et al., 2020; Durante-Mangoni et al., 2013; Fournier et al., 1999; Iravani et al., 1981; Jo et al., 2021; Markowitz et al., 1992; Mavromanolakis et al., 1997; May et al., 1997; Miehlke et al., 1998; Parry et al., 2007; Parry et al., 1977; Paul et al., 2015; Pogue et al., 2021; Rubinstein et al., 1995; Schaeffer et al., 1981; Walsh et al., 1993
No antibiotics common to treatment arms4.73 (2.14–10.42)37%; 0.51Dekker et al., 1987; Gerecht et al., 1989; Gibson et al., 1989; Haase et al., 1984; Harbarth et al., 2015; Hodson et al., 1987; Hoepelman et al., 1988; Iravani et al., 1981; Jo et al., 2021; Markowitz et al., 1992; Mavromanolakis et al., 1997; Miehlke et al., 1998; Parras et al., 1995; Paul et al., 2015; Rubinstein et al., 1995; Schaeffer et al., 1981; Schaeffer and Sisney, 1985; Winston et al., 1990; Winston et al., 1986
Appendix 6—table 2
Summary of the results of the predefined sub-group analyses for the outcome de novo emergence of resistance.

Note that the listing of eligible studies also includes studies reporting zero cases of resistance in both treatment arms, which were, therefore, not included in the statistical analysis.

Sub-group analysisOR (95% CI)Study heterogeneity (I2; τ2)Eligible studies
Number of antibiotics administered:
1 vs 20.89 (0.38–2.11)75%; 1.90Bender et al., 1979; Black et al., 1982; Cometta et al., 1994; Dickstein et al., 2020; Durante-Mangoni et al., 2013; Gerecht et al., 1989; Gibson et al., 1989; Hodson et al., 1987; Hoepelman et al., 1988; Hultén et al., 1997; Iravani et al., 1981; Jacobs et al., 1993; Jo et al., 2021; Markowitz et al., 1992; McCarty et al., 1988; Miehlke et al., 1998; Parry et al., 1977; Paul et al., 2015; Pogue et al., 2021; Pujol et al., 2021; Rubinstein et al., 1995; Smith et al., 1999; Stack et al., 1998; Wurzer et al., 1997
2 vs 30.38 (0.08–1.78)74%; 1.63Chaisson et al., 1997; Dubé et al., 1997; Fournier et al., 1999; May et al., 1997; Walsh et al., 1993
Administration of additional non-antibiotic drugs:
Non-antibiotic drugs as part of treatment0.22 (0.04–1.10)82%; 1.10Bender et al., 1979; Hultén et al., 1997; Miehlke et al., 1998; Parras et al., 1995; Stack et al., 1998; Wurzer et al., 1997
Non-antibiotic drugs administered if necessary0.97 (0.36–2.58)1%; 0.01Dickstein et al., 2020; Durante-Mangoni et al., 2013; Iravani et al., 1981; Jacobs et al., 1993; Pujol et al., 2021
Usage of the same dosage of antibiotics common to both treatment arms0.53 (0.24–1.16)71%; 1.38Bender et al., 1979; Chaisson et al., 1997; Cometta et al., 1994; Dickstein et al., 2020; Dubé et al., 1997; Durante-Mangoni et al., 2013; Fournier et al., 1999; Hultén et al., 1997; Jacobs et al., 1993; May et al., 1997; McCarty et al., 1988; Parry et al., 1977; Pogue et al., 2021; Pujol et al., 2021; Smith et al., 1999; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
Required comorbidity at study inclusion:
Yes0.71 (0.21–2.41)67%; 1.57Bender et al., 1979; Black et al., 1982; Chaisson et al., 1997; Cometta et al., 1994; Dawson et al., 2015; Dickstein et al., 2020; Dubé et al., 1997; Durante-Mangoni et al., 2013; Fournier et al., 1999; Hultén et al., 1997; Jacobs et al., 1993; Macnab et al., 1994; May et al., 1997; McCarty et al., 1988; Parry et al., 1977; Pogue et al., 2021; Pujol et al., 2021; Smith et al., 1999; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
No0.75 (0.28–2.01)80%; 2.02Gerecht et al., 1989; Gibson et al., 1989; Harbarth et al., 2015; Hodson et al., 1987; Hoepelman et al., 1988; Iravani et al., 1981; Jo et al., 2021; Markowitz et al., 1992; Miehlke et al., 1998; Parras et al., 1995; Paul et al., 2015; Rubinstein et al., 1995
Gram status
Negative0.60 (0.23–1.55)78%; 1.59Black et al., 1982; Dickstein et al., 2020; Durante-Mangoni et al., 2013; Hodson et al., 1987; Hultén et al., 1997; Iravani et al., 1981; Jo et al., 2021; McCarty et al., 1988; Miehlke et al., 1998; Parry et al., 1977; Pogue et al., 2021; Rubinstein et al., 1995; Smith et al., 1999; Stack et al., 1998; Wurzer et al., 1997
Positive0.44 (0.11–1.76)66%; 1.54Chaisson et al., 1997; Dubé et al., 1997; Fournier et al., 1999; Harbarth et al., 2015; Markowitz et al., 1992; May et al., 1997; Parras et al., 1995; Paul et al., 2015; Pujol et al., 2021; Walsh et al., 1993
Negative and positive3.34 (0.59–18.97)47%; 1.39Bender et al., 1979; Cometta et al., 1994; Gerecht et al., 1989; Gibson et al., 1989; Hoepelman et al., 1988; Jacobs et al., 1993
Only resistances of antibiotics common to treatment arms0.32 (0.16–0.66)59%; 0.87Bender et al., 1979; Black et al., 1982; Chaisson et al., 1997; Cometta et al., 1994; Dawson et al., 2015; Dickstein et al., 2020; Dubé et al., 1997; Durante-Mangoni et al., 2013; Fournier et al., 1999; Hultén et al., 1997; Jacobs et al., 1993; Macnab et al., 1994; May et al., 1997; McCarty et al., 1988; Parry et al., 1977; Pogue et al., 2021; Pujol et al., 2021; Smith et al., 1999; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
Age of antibiotics since the conduction of the trial:
Youngest antibiotic is in the treatment arm with the lower number of antibiotics0.73 (0.19–2.77)75%; 2.83Black et al., 1982; Dawson et al., 2015; Dubé et al., 1997; Gerecht et al., 1989; Gibson et al., 1989; Harbarth et al., 2015; Hodson et al., 1987; Hoepelman et al., 1988; Hultén et al., 1997; Jacobs et al., 1993; McCarty et al., 1988; Parras et al., 1995; Pujol et al., 2021; Smith et al., 1999; Stack et al., 1998
Youngest antibiotic is in the treatment arm with the higher number of antibiotics0.86 (0.34–2.17)70%; 0.98Chaisson et al., 1997; Dickstein et al., 2020; Durante-Mangoni et al., 2013; Fournier et al., 1999; Iravani et al., 1981; Jo et al., 2021; Markowitz et al., 1992; May et al., 1997; Miehlke et al., 1998; Parry et al., 1977; Paul et al., 2015; Pogue et al., 2021; Rubinstein et al., 1995; Walsh et al., 1993
No antibiotics common to treatment arms3.54 (0.91–13.75)38%; 0.68Gerecht et al., 1989; Gibson et al., 1989; Harbarth et al., 2015; Hodson et al., 1987; Hoepelman et al., 1988; Iravani et al., 1981; Jo et al., 2021; Markowitz et al., 1992; Miehlke et al., 1998; Parras et al., 1995; Paul et al., 2015; Rubinstein et al., 1995
Appendix 6—table 3
Summary of the results of the post-hoc sub-group analyses for the outcome acquisition of resistance.

Note that the listing of eligible studies also includes studies reporting zero cases in both treatment arms and were, therefore, not included in the statistical analysis.

Sub-group AnalysisOR (95% CI)Study heterogeneity (I2; τ2)Eligible studies
Additional administration of antibiotics:
Allowed1.18 (0.70–1.97)16%; 0.07Dickstein et al., 2020; Durante-Mangoni et al., 2013; Gibson et al., 1989; Harbarth et al., 2015; Iravani et al., 1981; Jacobs et al., 1993; McCarty et al., 1988; Paul et al., 2015; Pogue et al., 2021; Pujol et al., 2021; Rubinstein et al., 1995; Winston et al., 1990
Prohibited0.19 (0.04–0.98)57%; 0.79Gerecht et al., 1989; Hultén et al., 1997; Wurzer et al., 1997
Pre-resistance against non-administered antibiotics required at study inclusion:
Required1.08 (0.57–2.05)15%; 0.07Dickstein et al., 2020; Durante-Mangoni et al., 2013; Harbarth et al., 2015; Parras et al., 1995; Paul et al., 2015; Pogue et al., 2021; Pujol et al., 2021; Walsh et al., 1993
No1.25 (0.61–2.55)79%; 2.22Bender et al., 1979; Black et al., 1982; Chaisson et al., 1997; Cometta et al., 1994; Dawson et al., 2015; Dekker et al., 1987; Dubé et al., 1997; Fournier et al., 1999; Gerecht et al., 1989; Gibson et al., 1989; Haase et al., 1984; Hodson et al., 1987; Hoepelman et al., 1988; Hultén et al., 1997; Iravani et al., 1981; Jacobs et al., 1993; Jo et al., 2021; Macnab et al., 1994; Markowitz et al., 1992; Mavromanolakis et al., 1997; May et al., 1997; McCarty et al., 1988; Menon et al., 1986; Miehlke et al., 1998; Parry et al., 2007; Parry et al., 1977; Rubinstein et al., 1995; Schaeffer et al., 1981; Schaeffer and Sisney, 1985; Smith et al., 1999; Stack et al., 1998; Winston et al., 1990; Winston et al., 1986; Wurzer et al., 1997
Way of antibiotic administration:
Orally1.18 (0.44–3.15)78%; 2.70Bender et al., 1979; Black et al., 1982; Chaisson et al., 1997; Dawson et al., 2015; Dubé et al., 1997; Haase et al., 1984; Hultén et al., 1997; Iravani et al., 1981; Jo et al., 2021; Macnab et al., 1994; Mavromanolakis et al., 1997; Menon et al., 1986; Miehlke et al., 1998; Parry et al., 2007; Schaeffer et al., 1981; Schaeffer and Sisney, 1985; Stack et al., 1998; Walsh et al., 1993; Winston et al., 1990; Winston et al., 1986; Wurzer et al., 1997
Intravenously1.83 (0.67–5.00)66%; 0.90Dickstein et al., 2020; Durante-Mangoni et al., 2013; Gerecht et al., 1989; Gibson et al., 1989; Hoepelman et al., 1988; Jacobs et al., 1993; Markowitz et al., 1992; Pogue et al., 2021; Pujol et al., 2021; Smith et al., 1999
Different ways of administration in the treatment arms1.51 (0.67–3.39)1%; 0.01Dekker et al., 1987; Hodson et al., 1987; Parry et al., 1977; Paul et al., 2015
Appendix 6—table 4
Summary of the results of the post-hoc sub-group analyses for the outcome de novo emergence of resistance.

Note that the listing of eligible studies also includes studies reporting zero cases in both treatment arms and were, therefore, not included in the statistical analysis.

Sub-group analysisOR (95% CI)Study heterogeneity (I2; τ2)Eligible studies
Additional administration of antibiotics:
Allowed0.95 (0.59–1.51)3%; 0.01Dickstein et al., 2020; Durante-Mangoni et al., 2013; Gibson et al., 1989; Harbarth et al., 2015; Iravani et al., 1981; Jacobs et al., 1993; McCarty et al., 1988; Paul et al., 2015; Pogue et al., 2021; Pujol et al., 2021; Rubinstein et al., 1995
Prohibited0.19 (0.04–0.98)57%; 0.79Gerecht et al., 1989; Hultén et al., 1997; Wurzer et al., 1997
Pre-resistance against non-administered antibiotics required at study inclusion:
Required1.07 (0.53–2.18)17%; 0.10Dickstein et al., 2020; Durante-Mangoni et al., 2013; Harbarth et al., 2015; Parras et al., 1995; Paul et al., 2015; Pogue et al., 2021; Pujol et al., 2021; Walsh et al., 1993
No0.63 (0.23–1.68)78%; 2.57Bender et al., 1979; Black et al., 1982; Chaisson et al., 1997; Cometta et al., 1994; Dawson et al., 2015; Dubé et al., 1997; Fournier et al., 1999; Gerecht et al., 1989; Gibson et al., 1989; Hodson et al., 1987; Hoepelman et al., 1988; Hultén et al., 1997; Iravani et al., 1981; Jacobs et al., 1993; Jo et al., 2021; Macnab et al., 1994; Markowitz et al., 1992; May et al., 1997; McCarty et al., 1988; Miehlke et al., 1998; Parry et al., 1977; Rubinstein et al., 1995; Smith et al., 1999; Stack et al., 1998; Wurzer et al., 1997
Way of antibiotic administration:
Orally0.37 (0.11–1.23)69%; 1.96Bender et al., 1979; Black et al., 1982; Chaisson et al., 1997; Dawson et al., 2015; Dubé et al., 1997; Hultén et al., 1997; Iravani et al., 1981; Jo et al., 2021; Macnab et al., 1994; Miehlke et al., 1998; Stack et al., 1998; Walsh et al., 1993; Wurzer et al., 1997
Intravenously1.82 (0.64–5.18)66%; 0.90Dickstein et al., 2020; Durante-Mangoni et al., 2013; Gerecht et al., 1989; Gibson et al., 1989; Hoepelman et al., 1988; Jacobs et al., 1993; Markowitz et al., 1992; Pogue et al., 2021; Pujol et al., 2021; Smith et al., 1999
Different ways of administration in the treatment arms2.12 (0.35–12.79)1%; 0.01Hodson et al., 1987; Parry et al., 1977; Paul et al., 2015
Appendix 7—table 1
Overview of the model-averaged coefficients obtained by the multi-model inference for the main outcome acquisition of resistance.

Significant model estimates are displayed in a bold font.

Model-averaged coefficients (full-average)EstimatedStandard errorz valuePr(>|z|)
Intercept0.731.690.600.54
Length of follow-up1.001.000.460.65
Treatment length0.990.010.770.43
1 vs 3 antibiotics0.782.190.310.75
2 vs 3 antibiotics1.162.160.190.85
Antibiotics in common: no5.671.892.730.01
Comorbidity: yes1.351.770.530.60
Gram-positive and negative bacteria1.521.910.650.52
Gram-positive bacteria1.082.070.110.91
Year difference of youngest antibiotics1.001.010.150.88
Appendix 7—table 2
Model output for a meta-regression for acquisition of resistance including as a covariable, whether at least one antibiotic was in common in the treatment arms.

Significant model estimates are displayed in a bold font.

OR (95% CI)z valuePr(>|z|)Study heterogeneity (I2; τ2)
Intercept0.63 (0.33–1.21)–1.390.1759%; 0.90
Antibiotics common: no5.86 (2.05–16.76)3.30<0.01
Appendix 7—table 3
Overview of the model-averaged coefficients obtained by the multi-model inference for the main outcome de novo emergence of resistance.
Model-averaged coefficients (full-average)EstimatedStandard errorz valuePr(>|z|)
Intercept2.222.420.900.37
Length of follow-up0.991.010.730.46
Treatment length1.001.010.410.68
2 vs 3 antibiotics1.292.510.280.78
Antibiotics in common: yes0.322.661.160.25
Comorbidity: yes1.402.030.470.64
Gram-positive and negative bacteria1.452.230.470.64
Gram-positive bacteria1.161.980.210.83
Year difference of youngest antibiotics0.991.020.300.72
Appendix 9—table 1
Oerview of different treatment failure definitions.
StudyDefinition of treatment failure given by the study authors
Cometta et al., 1994Lack of improvement of primary infection, development of a sepsis syndrome or septic shock during treatment, superinfection
Durante-Mangoni et al., 2013No improvement of clinical conditions by day 21 or worsening of the condition at any time, given persistently positive Acinetobacter baumannii cultures
Gerecht et al., 1989Continued presence of infecting organism(s) in bile cultures, with persistent indications of cholangitis, or superinfection, or the presence of new infecting organism(s) during or at the end of antibiotic treatment, with indications of cholangitis, or the emergence of an infecting organism(s) resistant to gentamicin or mezlocillin during treatment, with indications of cholangitis, or the emergence of an infecting organism(s) resistant to gentamicin or mezlocillin during treatment, with indications of cholangitis, or relapse, or recurrence of indications of cholangitis, with the original infecting organism(s) present in cultures of bile or blood within 8 wk after treatment, or death due to uncontrolled infection.
Haase et al., 1984The persisting presence of the pretherapy infecting organism, with or without pyuria, during treatment.
Harbarth et al., 2015No improvement or worsening in the clinical condition, or a change of the assigned therapy at any time, or death.
Jacobs et al., 1993No apparent response to therapy and no definitive identification of an alternative etiology that would explain this lack of response.
Markowitz et al., 1992Persistence of septic pulmonary emboli, persistence of positive blood or deep tissue cultures, or relapse after the end of presumably adequate treatment.
May et al., 1997Treatment failure was defined as all other situations than success, whereas the primary determinants of success were as follows: patient living, either not fever or a reduction of ≥1 °C in initial body temperature, and a blood culture negative for M. avium
Parry et al., 2007Continuing fever with at least one other typhoid-related symptom for more than 7 d after the start of treatment, or a required change in therapy due to the development of severe complications during treatment (severe gastrointestinal bleeding, intestinal perforation, visible jaundice, myocarditis, pneumonia, renal failure, shock, or an altered conscious level)
Paul et al., 2015Treatment failure at 7 d was defined as a composition of death, persistence of fever, persistence of hypotension, non-improving Sequential Organ Failure Assessment score, or persistent bacteraemia on day 7.
Pogue et al., 2021Clinical failure was defined by meeting any of the following criteria: death either during therapy or within 7 d after; receipt of rescue therapy for the trial pathogen within 7 d after treatment, exclusion from the trial due to an adverse event considered related to trial treatment; bacteremia more than 5 d after the begin of therapy for patients with blood stream infections; or failure to improve or worsening of oxygenation by the end of trial treatment in patients with pneumonia.
Pujol et al., 2021No clinical improvement after 3 d of therapy, persistent MRSA bacteraemia at day 7 or later, early discontinuation of therapy due to adverse events or based on clinical judgment, recurrent MRSA bacteraemia before or at the test of cure, missing blood cultures at the test of cure, and/or death due to any cause before the test of cure.
Rubinstein et al., 1995Use of a new antibiotic due to a worsening in clinical condition, isolation of resistant organism, or superinfection at the initial site during treatment, no clinical response or death attributed to infection.
Appendix 10—table 1
List of studies for which study authors or institutions were contacted.

An indication is given as to whether clarifying information was obtained.

StudyPerson/Institution contactedInformation sufficient for paper inclusion obtained (yes/no)
African and Councils, 1972Research office of the Royal Brompton & Harefield hospitalsno
Bazzoli et al., 1998Franco Bazollino
Benson et al., 2000Constance Bensonno
Bochenek et al., 2003David Yates Graham; Wieslaw Bochenekno
Bosso and Black, 1988John Bossono
Bow et al., 1987Eric Bowno
Cruciani et al., 1989Mario Crucianino
Dalgic et al., 2014Nazan Dalgicno
de Pauw et al., 1985Ben de Pauwno
de Pauw, 1987Ben de Pauwno
DiNubile et al., 2005Mark Dinubileno
Frank et al., 2002Elliot Frankno
Gold et al., 1985Ronald Goldno
Grossman et al., 1994Ronald Grossmanno
Grabe et al., 1986Magnus Grabeno
Guerrant et al., 1981Richard Guerrantno
Heyland et al., 2008Daren Heylandno
Hodson et al., 1987Margaret Hodsonno
Hoepelman et al., 1988Andy I.M. Hoepelmanno
Jackson et al., 1986Mary Anne Jacksonno
Liang et al., 1990Raymond Hin Suen Liangno
McLaughlin et al., 1983John McLaughlinno
Muder et al., 1994Robert Muderno
Padoan et al., 1987Rita Padoanno
Paul et al., 2015Mical Paulyes
Parry et al., 2007Christopher Parryyes
Pujol et al., 2021Miquel Pujolyes
Schaad et al., 1997Urs Schaadno
Shawky et al., 2022Sherief Bad-Elsalamno
Sun et al., 2022Jia Fanno
Appendix 10—table 2
Table of studies, which were included in previous meta-analyses, but excluded in our study.

The reason for exclusion is indicated. *In our protocol we stated, that we would include articles in the Russian language. However, since VNK, the only Russian-speaking author, did not screen all the papers from our systematic search for inclusion, we excluded studies in the Russian language.

StudyInclusion in previous meta-analysesReason for exclusionIdentified with our search strategy
Carbon et al., 1987Paul et al., 2014Not accessible via ETH Zurich library servicesno
Cone et al., 1985Bliziotis et al., 2005No data on resistance emergence, due to no clear statement of how many resistances are measured in the treatment arm with more antibioticsno
Croce et al., 1993Bliziotis et al., 2005No proper randomisation of treatment strategies, i.e., the trial was conducted in different phasesyes
German and Austrian Imipenem/Cilastatin Study Group, 1992Bliziotis et al., 2005, Paul et al., 2014No fixed treatment, as an additional antibiotic was allowed to be administered only in the treatment arm with more antibioticsno
Gribble et al., 1983Bliziotis et al., 2005No fixed treatment, since antibiotics could be substituted during treatmentyes
Iakovlev et al., 1998Paul et al., 2014Russian language*no
Klastersky et al., 1973Paul et al., 2014Not clearly extractable how many patients developed resistanceno
Mandell et al., 1987Bliziotis et al., 2005, Paul et al., 2014Treatment is not fixed due to alterations of treatment based on the infecting organismno
Sculier et al., 1982Paul et al., 2014No proper comparison, since the study does not compare per se a different number of antibiotics but adds an additional way of administration of the same antibioticno

Additional files

Supplementary file 1

Overview of the 42 randomised controlled trials (RCTs) or quasi-RCTs included in the systematic review and meta-analysis.

The underlined antibiotics indicate that resistance measurements were made for this antibiotic, reported and extractable from the studies. Justification for resistance outcome extraction is given in Appendix 3—table 1.

https://cdn.elifesciences.org/articles/93740/elife-93740-supp1-v1.docx
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https://cdn.elifesciences.org/articles/93740/elife-93740-mdarchecklist1-v1.pdf

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  1. Berit Siedentop
  2. Viacheslav N Kachalov
  3. Christopher Witzany
  4. Matthias Egger
  5. Roger D Kouyos
  6. Sebastian Bonhoeffer
(2024)
The effect of combining antibiotics on resistance: A systematic review and meta-analysis
eLife 13:RP93740.
https://doi.org/10.7554/eLife.93740.3