Importin-β modulates the permeability of the nuclear pore complex in a Ran-dependent manner

  1. Alan R Lowe
  2. Jeffrey H Tang
  3. Jaime Yassif
  4. Michael Graf
  5. William Y C Huang
  6. Jay T Groves
  7. Karsten Weis
  8. Jan T Liphardt  Is a corresponding author
  1. University College London and Birkbeck College, United Kingdom
  2. Stanford University, United States
  3. University of California, Berkeley, United States
  4. École polytechnique fédérale de Lausanne, Switzerland
  5. Howard Hughes Medical Institute, University of California, Berkeley, United States

Abstract

Soluble karyopherins of the importin-β (impβ) family use RanGTP to transport cargos directionally through the nuclear pore complex (NPC). Whether impβ or RanGTP regulate the permeability of the NPC itself has been unknown. Here, we identify a stable pool of impβ at the NPC. A subpopulation of this pool is rapidly turned-over by RanGTP, likely at Nup153. Impβ, but not transportin-1 (TRN1), alters the pore's permeability in a Ran-dependent manner, suggesting that impβ is a functional component of the NPC. Upon reduction of Nup153 levels, inert cargos more readily equilibrate across the NPC yet active transport is impaired. When purified impβ or TRN1 are mixed with Nup153 in vitro, higher-order, multivalent complexes form. RanGTP dissolves the impβ•Nup153 complexes but not those of TRN1•Nup153. We propose that impβ and Nup153 interact at the NPC's nuclear face to form a Ran-regulated mesh that modulates NPC permeability.

Article and author information

Author details

  1. Alan R Lowe

    Institute for Structural and Molecular Biology, University College London and Birkbeck College, London, United Kingdom
    Competing interests
    No competing interests declared.
  2. Jeffrey H Tang

    Department of Bioengineering, Stanford University, Stanford, United States
    Competing interests
    No competing interests declared.
  3. Jaime Yassif

    Department of Physics, University of California, Berkeley, Berkeley, United States
    Competing interests
    No competing interests declared.
  4. Michael Graf

    Section of Life Sciences and Technologies, École polytechnique fédérale de Lausanne, Lausanne, Switzerland
    Competing interests
    No competing interests declared.
  5. William Y C Huang

    Department of Chemistry, Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States
    Competing interests
    No competing interests declared.
  6. Jay T Groves

    QB3, University of California, Berkeley, Berkeley, United States
    Competing interests
    No competing interests declared.
  7. Karsten Weis

    Department of Molecular and Cellular Biology, University of California, Berkeley, Berkeley, United States
    Competing interests
    Karsten Weis, Reviewing editor, eLife.
  8. Jan T Liphardt

    Department of Bioengineering, Stanford University, Stanford, United States
    For correspondence
    jan.liphardt@stanford.edu
    Competing interests
    No competing interests declared.

Reviewing Editor

  1. Vivek Malhotra, Center for Genomic Regulation, Spain

Version history

  1. Received: July 18, 2014
  2. Accepted: February 27, 2015
  3. Accepted Manuscript published: March 6, 2015 (version 1)
  4. Version of Record published: March 27, 2015 (version 2)

Copyright

© 2015, Lowe et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 5,353
    views
  • 1,172
    downloads
  • 91
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Alan R Lowe
  2. Jeffrey H Tang
  3. Jaime Yassif
  4. Michael Graf
  5. William Y C Huang
  6. Jay T Groves
  7. Karsten Weis
  8. Jan T Liphardt
(2015)
Importin-β modulates the permeability of the nuclear pore complex in a Ran-dependent manner
eLife 4:e04052.
https://doi.org/10.7554/eLife.04052

Share this article

https://doi.org/10.7554/eLife.04052

Further reading

    1. Cell Biology
    2. Structural Biology and Molecular Biophysics
    Shun Kai Yang, Shintaroh Kubo ... Khanh Huy Bui
    Research Article

    Acetylation of α-tubulin at the lysine 40 residue (αK40) by αTAT1/MEC-17 acetyltransferase modulates microtubule properties and occurs in most eukaryotic cells. Previous literatures suggest that acetylated microtubules are more stable and damage resistant. αK40 acetylation is the only known microtubule luminal post-translational modification site. The luminal location suggests that the modification tunes the lateral interaction of protofilaments inside the microtubule. In this study, we examined the effect of tubulin acetylation on the doublet microtubule (DMT) in the cilia of Tetrahymena thermophila using a combination of cryo-electron microscopy, molecular dynamics, and mass spectrometry. We found that αK40 acetylation exerts a small-scale effect on the DMT structure and stability by influencing the lateral rotational angle. In addition, comparative mass spectrometry revealed a link between αK40 acetylation and phosphorylation in cilia.

    1. Structural Biology and Molecular Biophysics
    Sebastian Jojoa-Cruz, Adrienne E Dubin ... Andrew B Ward
    Research Advance

    The dimeric two-pore OSCA/TMEM63 family has recently been identified as mechanically activated ion channels. Previously, based on the unique features of the structure of OSCA1.2, we postulated the potential involvement of several structural elements in sensing membrane tension (Jojoa-Cruz et al., 2018). Interestingly, while OSCA1, 2, and 3 clades are activated by membrane stretch in cell-attached patches (i.e. they are stretch-activated channels), they differ in their ability to transduce membrane deformation induced by a blunt probe (poking). Here, in an effort to understand the domains contributing to mechanical signal transduction, we used cryo-electron microscopy to solve the structure of Arabidopsis thaliana (At) OSCA3.1, which, unlike AtOSCA1.2, only produced stretch- but not poke-activated currents in our initial characterization (Murthy et al., 2018). Mutagenesis and electrophysiological assessment of conserved and divergent putative mechanosensitive features of OSCA1.2 reveal a selective disruption of the macroscopic currents elicited by poking without considerable effects on stretch-activated currents (SAC). Our results support the involvement of the amphipathic helix and lipid-interacting residues in the membrane fenestration in the response to poking. Our findings position these two structural elements as potential sources of functional diversity within the family.