1. Epidemiology and Global Health
  2. Medicine
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Mathematical modeling of the West Africa Ebola epidemic

  1. Jean-Paul Chretien  Is a corresponding author
  2. Steven Riley
  3. Dylan B George
  1. Division of Integrated Biosurveillance, Armed Forces Health Surveillance Center, United States
  2. School of Public Health, Imperial College London, United Kingdom
  3. Biomedical Advanced Research and Development Authority, United States
Research Article
Cite this article as: eLife 2015;4:e09186 doi: 10.7554/eLife.09186
7 figures, 1 table and 4 additional files

Figures

Cumulative number of modeling applications by date of most recent EVD data used.

The figure includes 125 modeling applications across the 66 publications.

https://doi.org/10.7554/eLife.09186.005
Publication lag by type of modeling application.

The vertical red and turquoise lines indicate the median lag for publications including and not including, respectively, the type of modeling application.

https://doi.org/10.7554/eLife.09186.006
R0 estimates by type of model input data.

Aggregate, case counts released by the WHO or Ministries of Health; Line-level, individual-level data from epidemiological investigations; Genomic, Ebola virus sequence data. The Figure excludes an outlier estimate of 8.33 for Sierra Leone (Fisman et al., 2014).

https://doi.org/10.7554/eLife.09186.007
R0 estimates and CIs by type of epidemiological input data.

Disaggregated data typically were weekly counts. Top row: Vertical lines indicate 95% CIs. Bottom row: Horizontal bars indicate median CI width.

https://doi.org/10.7554/eLife.09186.008
R0 estimates and CIs by model fitting method.

Top row: Vertical lines indicate 95% CIs. Bottom row: Horizontal bars indicate median CI width.

https://doi.org/10.7554/eLife.09186.009
Accuracy of cumulative incidence forecasts.

Accuracy is shown as the ratio of predicted incidence to incidence subsequently reported by the WHO. 'Dampening' refers to various approaches to restrict the growth of forecasted incidence over time. Top row: Accuracy by date of forecast. Bottom row: Accuracy by forecast lead time ('Horizon'). The Figure excludes one forecast with horizon > 1 year (Fisman and Tuite, 2014).

https://doi.org/10.7554/eLife.09186.010

Tables

Table 1

Overview of modeling publications on the 2013-present EVD epidemic.

https://doi.org/10.7554/eLife.09186.004
Ref.Date of latest EVD dataDate publishedEVD data was pre-existing and publicUncertainties addressed
RInterventionsForecastSpreadPhylogeneticsClinical trials
Baize et al., 2014 3/20/144/16/14No*
Dudas and Rambaut, 2014 3/20/145/2/14Yes*
Alizon et al., 2014 6/18/1412/13/14Yes**
Gire et al., 2014 6/18/148/28/14No**
Stadler et al., 2014 6/18/1410/6/14Yes*
Volz and Pond, 2014 6/18/1410/24/14Yes*
Pandey et al., 2014 8/7/1410/30/14Yes***
Gomes et al., 2014 8/9/149/2/14Yes***
Valdez et al., 2015 8/15/147/20/15Yes****
Merler et al., 2015 8/16/141/7/15Yes****
Rainisch et al., 2015 8/16/142/18/15Yes*
Althaus, 2014 8/20/149/2/14Yes*
Fisman et al., 2014 8/22/149/8/14Yes**
Nishiura and Chowell, 2014 8/26/149/11/14Yes**
Poletto et al., 2014 8/27/1410/23/14Yes**
Meltzer et al., 2014 8/28/149/26/14Yes***
Agusto et al., 2015 8/29/144/23/15Yes**
Althaus, 2015 8/31/144/19/15Yes*
Scarpino et al., 2014 8/31/1412/15/14Yes*
Weitz and Dushoff, 2015 8/31/143/4/15Yes**
Drake et al., 2015 9/2/1410/30/14Yes***
Towers et al., 2014 9/8/149/18/14Yes**
Bellan et al., 2014 9/14/1410/14/14Yes*
Chowell et al., 2015 9/14/141/19/15Yes*
Cooper et al., 2015 9/14/144/14/15Yes*
Read et al., 2015 9/14/1411/12/14Yes**
WHO Ebola Response Team, 2014 9/14/149/23/14No***
Faye et al., 2015 9/16/141/23/15No**
Bogoch et al., 2015 9/21/1410/21/14Yes**
Yamin et al., 2014 9/22/1410/28/14No**
Lewnard et al., 2014 9/23/1410/24/14Yes***
Webb et al., 2015 9/23/141/30/15Yes***
Shaman et al., 2014 9/28/1410/27/14Yes**
Chowell et al., 2014 10/1/1411/20/14Yes**
Fasina et al., 2014 10/1/1410/9/14Yes*
Khan et al., 2015 10/1/142/24/15Yes*
Rivers et al., 2014 10/5/1410/16/14Yes***
Xia et al., 2015 10/7/149/8/15Yes**
Majumder et al., 2014 10/11/144/28/15Yes**
Kiskowski, 2014 10/15/1411/13/14Yes**
Fisman and Tuite, 2014 10/18/1411/21/14Yes***
Althaus et al., 2015 10/20/141/15/15Yes***
Simon-Loriere et al., 2015 10/25/146/24/15No*
Rainisch et al., 2015 10/31/146/16/15Yes*
Fast et al., 2015 11/1/145/15/15Yes*
Kucharski et al., 2015 11/1/142/18/15Yes***
Tong et al., 2015 11/11/145/13/15No**
Hoenen et al., 2015 11/21/143/26/15No*
Cope et al., 2014 12/3/1412/10/14Yes**
White et al., 2014 12/3/141/30/15Yes***
WHO Ebola Response Team, 2015 12/14/1412/24/14No**
Chowell et al., 2014 12/17/141/21/15Yes*
Siettos et al., 2014 12/21/143/9/15Yes**
Park et al., 2015 12/26/146/18/15No*
Nadhem and Nejib, 2015 12/30/146/14/15Yes*
Camacho et al., 2015 1/18/152/10/15Yes**
Carroll et al., 2015 1/31/156/17/15No**
Bellan et al., 2015 2/9/154/15/15Yes**
Barbarossa et al., 2015 2/13/157/21/15Yes***
Kugelman et al., 2015 2/14/156/12/15No*
Cleaton et al., 2015 2/28/159/3/15Yes*
Wang and Zhong, 2015 3/18/153/24/15Yes*
Toth et al., 2015 3/31/157/14/15Yes**
Dong et al., 2015 4/3/159/5/15Yes**
Browne et al., 2015 4/12/155/14/15Yes**
Zinszer et al., 2015 5/13/159/1/15Yes*

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