Target DNA bending by the Mu transpososome promotes careful transposition and prevents its reversal
Abstract
The transposition of bacteriophage Mu serves as a model system for understanding DDE transposases and integrases. All available structures of these enzymes at the end of the transposition reaction, including Mu, exhibit significant bends in the transposition target site DNA. Here we use Mu to investigate the ramifications of target DNA bending on the transposition reaction. Enhancing the flexibility of the target DNA or prebending it increases its affinity for transpososomes by over an order of magnitude and increases the overall reaction rate. This and FRET confirm that flexibility is interrogated early during the interaction between the transposase and a potential target site, which may be how other DNA binding proteins can steer selection of advantageous target sites. We also find that the conformation of the target DNA after strand transfer is involved in preventing accidental catalysis of the reverse reaction, as conditions that destabilize this conformation also trigger reversal.
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Funding
National Institute of General Medical Sciences (GM101989)
- James Richard Fuller
- Phoebe A Rice
National Center for Research Resources (1S10RR026988-01)
- James Richard Fuller
- Phoebe A Rice
National Science Foundation (DMR1420709)
- James Richard Fuller
- Phoebe A Rice
National Institute of General Medical Sciences (GM007183)
- James Richard Fuller
- Phoebe A Rice
National Institute of General Medical Sciences (GM104397)
- James Richard Fuller
- Phoebe A Rice
The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
Copyright
© 2017, Fuller & Rice
This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.
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