The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization
- New York University Abu Dhabi, United Arab Emirates
- Max Planck Institute of Molecular Plant Physiology, Germany
Abstract
To investigate the phenomic and genomic traits that allow green algae to survive in deserts, we characterized a ubiquitous species, Chloroidium sp. UTEX 3007, which we isolated from multiple locations in the United Arab Emirates (UAE). Metabolomic analyses of Chloroidium sp. UTEX 3007 indicated that the alga accumulates a broad range of carbon sources, including several desiccation tolerance-promoting sugars and unusually large stores of palmitate. Growth assays revealed capacities to grow in salinities from zero to 60 g/L and to grow heterotrophically on >40 distinct carbon sources. Assembly and annotation of genomic reads yielded a 52.5 Mbp genome with 8153 functionally annotated genes. Comparison with other sequenced green algae revealed unique protein families involved in osmotic stress tolerance and saccharide metabolism that support phenomic studies. Our results reveal the robust and flexible biology utilized by a green alga to successfully inhabit a desert coastline.
Data availability
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The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatizationAvailable at Dryad Digital Repository under a CC0 Public Domain Dedication.
Article and author information
Author details
Ashish Kumar Jaiswal
Amphun Chaiboonchoe
Kourosh Salehi-Ashtiani
Funding
NYUAD Institute (Grant (G1205-1205i -1205h -1205e))
- Kourosh Salehi-Ashtiani
NYUAD Faculty Research Funds
- Kourosh Salehi-Ashtiani
The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
Reviewing Editor
- Joerg Bohlmann, University of British Columbia, Canada
Version history
- Received: February 5, 2017
- Accepted: June 15, 2017
- Accepted Manuscript published: June 17, 2017 (version 1)
- Version of Record published: July 13, 2017 (version 2)
- Version of Record updated: August 8, 2017 (version 3)
Copyright
© 2017, Nelson et al.
This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.
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The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization
eLife 6:e25783.
https://doi.org/10.7554/eLife.25783
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