Direct measurement of conformational strain energy in protofilaments curling outward from disassembling microtubule tips

  1. Jonathan W Driver
  2. Elisabeth A Geyer
  3. Megan E Bailey
  4. Luke M Rice  Is a corresponding author
  5. Charles L Asbury  Is a corresponding author
  1. University of Washington, United States
  2. University of Texas Southwestern Medical Center, United States

Abstract

Disassembling microtubules can generate movement independently of motor enzymes, especially at kinetochores where they drive chromosome motility. A popular explanation is the 'conformational wave' model, in which protofilaments pull on the kinetochore as they curl outward from a disassembling tip. But whether protofilaments can work efficiently via this spring-like mechanism has been unclear. By modifying a previous assay to use recombinant tubulin and feedback-controlled laser trapping, we directly demonstrate the spring-like elasticity of curling protofilaments. Measuring their mechanical work output suggests they carry ~25% of the energy of GTP hydrolysis as bending strain, enabling them to drive movement with efficiency similar to conventional motors. Surprisingly, a β-tubulin mutant that dramatically slows disassembly has no effect on work output, indicating an uncoupling of disassembly speed from protofilament strain. These results show the wave mechanism can make a major contribution to kinetochore motility and establish a direct approach for measuring tubulin mechano-chemistry.

Article and author information

Author details

  1. Jonathan W Driver

    Department of Physiology and Biophysics, University of Washington, Seattle, United States
    Competing interests
    The authors declare that no competing interests exist.
  2. Elisabeth A Geyer

    Department of Biophysics and Biochemistry, University of Texas Southwestern Medical Center, Dallas, United States
    Competing interests
    The authors declare that no competing interests exist.
  3. Megan E Bailey

    Department of Physiology and Biophysics, University of Washington, Seattle, United States
    Competing interests
    The authors declare that no competing interests exist.
  4. Luke M Rice

    Department of Biophysics and Biochemistry, University of Texas Southwestern Medical Center, Dallas, United States
    For correspondence
    Luke.Rice@UTSouthwestern.edu
    Competing interests
    The authors declare that no competing interests exist.
  5. Charles L Asbury

    Department of Physiology and Biophysics, University of Washington, Seattle, United States
    For correspondence
    casbury@uw.edu
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-0143-5394

Funding

Sackler Scholars Program in Integrative Biophysics

  • Jonathan W Driver

Leukemia and Lymphoma Society

  • Jonathan W Driver

National Institutes of Health (T32CA080416)

  • Megan E Bailey

Packard Foundation (2006‐30521)

  • Charles L Asbury

NSF Graduate Research Fellowship (2014177758)

  • Elisabeth A Geyer

National Institutes of Health (RO1GM098543)

  • Luke M Rice

NSF Career Award (MCB1054947)

  • Luke M Rice

National Institutes of Health (RO1GM079373)

  • Charles L Asbury

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2017, Driver et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 2,523
    views
  • 419
    downloads
  • 51
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Jonathan W Driver
  2. Elisabeth A Geyer
  3. Megan E Bailey
  4. Luke M Rice
  5. Charles L Asbury
(2017)
Direct measurement of conformational strain energy in protofilaments curling outward from disassembling microtubule tips
eLife 6:e28433.
https://doi.org/10.7554/eLife.28433

Share this article

https://doi.org/10.7554/eLife.28433

Further reading

    1. Biochemistry and Chemical Biology
    2. Structural Biology and Molecular Biophysics
    Sasha L Evans, Bethany A Haynes ... Rivka L Isaacson
    Insight

    Nature has inspired the design of improved inhibitors for cancer-causing proteins.

    1. Structural Biology and Molecular Biophysics
    Gabriel E Jara, Francesco Pontiggia ... Dorothee Kern
    Research Article

    Transition-state (TS) theory has provided the theoretical framework to explain the enormous rate accelerations of chemical reactions by enzymes. Given that proteins display large ensembles of conformations, unique TSs would pose a huge entropic bottleneck for enzyme catalysis. To shed light on this question, we studied the nature of the enzymatic TS for the phosphoryl-transfer step in adenylate kinase by quantum-mechanics/molecular-mechanics calculations. We find a structurally wide set of energetically equivalent configurations that lie along the reaction coordinate and hence a broad transition-state ensemble (TSE). A conformationally delocalized ensemble, including asymmetric TSs, is rooted in the macroscopic nature of the enzyme. The computational results are buttressed by enzyme kinetics experiments that confirm the decrease of the entropy of activation predicted from such wide TSE. TSEs as a key for efficient enzyme catalysis further boosts a unifying concept for protein folding and conformational transitions underlying protein function.