Strain (M. musculus) | NOG | PMID: 15879151 | NOD.Cg-Prkdcscid Il2rgtm1Sug/JicTac | Taconic (Hudson, NY) |
Strain (M. musculus) | Nkx3.1CreERT2 | PMID: 19741607 | Nkx3-1tm4(CreERT2)Mms | established by Shen lab |
Strain (M. musculus) | Ptenflox | PMID: 11691952 | C;129S4-Ptentm1Hwu/J | JAX #004597 (Bar Harbor, ME) |
Strain (M. musculus) | KrasLSL-G12D | PMID: 11751630 | B6.129-Krastm4Tyj/Nci | MMHCC #01XJ6 |
Strain (M. musculus) | ARflox | PMID: 14745012 | B6N.129-Artm1Verh/Cnrm | EMMA #02579 |
Strain (M. musculus) | R26R-YFP | PMID: 11299042 | B6.129 × 1-Gt(ROSA) 26Sortm1(EYFP)Cos/J | JAX #006148 |
Cell line (Homo sapiens) | HPE-1 | this work | | Adherent cell line established from radical prostatectomy 23 tissue, sorted for EpCAM+Ecad+ cells |
Cell line (H. sapiens) | HPE-2 | this work | | Adherent cell line established from radical prostatectomy 23 tissue, sorted for EpCAM+Ecad+ cells |
Cell line (H. sapiens) | HPE-3 | this work | | Adherent cell line established from radical prostatectomy 24 tissue, sorted for EpCAM+Ecad+ cells |
Cell line (H. sapiens) | HPE-4 | this work | | Adherent cell line established from radical prostatectomy 25 tissue |
Cell line (H. sapiens) | HPE-5 | this work | | Adherent cell line established from radical prostatectomy 25 tissue, sorted for EpCAM+Ecad+ cells |
Cell line (H. sapiens) | HPE-6 | this work | | Adherent cell line established from radical prostatectomy 25 tissue, sorted for EpCAM+Ecad+Ngfr+ cells |
Cell line (H. sapiens) | HPE-7 | this work | | Adherent cell line established from radical prostatectomy 25 tissue, sorted for EpCAM+Ecad+Cd24+ cells |
Cell line (H. sapiens) | HPE-8 | this work | | Adherent cell line established from radical prostatectomy 26 tissue |
Cell line (H. sapiens) | HPE-9 | this work | | Adherent cell line established from radical prostatectomy 26 tissue, sorted for EpCAM+Ecad+ cells |
Cell line (H. sapiens) | HPE-10 | this work | | Adherent cell line established from radical prostatectomy 26 tissue, sorted for EpCAM+Ecad+Cd24+ cells |
Cell line (H. sapiens) | HPE-11 | this work | | Adherent cell line established from radical prostatectomy 26 tissue, sorted for EpCAM+Ecad+Agr2+ cells |
Cell line (H. sapiens) | HPE-12 | this work | | Adherent cell line established from radical prostatectomy 27 tissue |
Cell line (H. sapiens) | HPE-13 | this work | | Adherent cell line established from radical prostatectomy 27 tissue; sorted for EpCAM+Ecad+cells |
Cell line (H. sapiens) | HPE-14 | this work | | Adherent cell line established from radical prostatectomy 27 tissue, sorted for EpCAM+Ecad+Cd24+ cells |
Cell line (M. musculus) | ADCA-1 | this work | | Adherent cell line established from single YFP+ cell isolated from castrated and tamoxifen-treated Nkx3.1CreERT2/+; Arflox/Y; R262R-YFP/+ mouse with deletedAr (recombined) allele |
Cell line (M. musculus) | ADCA-2 | this work | | Adherent cell line established from single YFP+ cell isolated from castrated and tamoxifen-treated Nkx3.1CreERT2/+; Arflox/Y; R262R-YFP/+ mouse with deletedAr (recombined) allele |
Cell line (M. musculus) | APCA-1 | this work | | Adherent cell line established from single YFP+ cell isolated from castrated and tamoxifen-treated Nkx3.1CreERT2/+; Arflox/Y; R262R-YFP/+ mouse with intact Ar (non-recombined) allele |
Cell line (M. musculus) | APCA-2 | this work | | Adherent cell line established from single YFP+ cell isolated from castrated and tamoxifen-treated Nkx3.1CreERT2/+; Arflox/Y; R262R-YFP/+ mouse with intact Ar (non-recombined) allele |
Antibody | Androgen receptor (AR) | Sigma (St. Louis, MO) | A9853 | |
Antibody | Cytokeratin 8 (CK8) | Developmental Studies Hybridoma Bank (Iowa City, IA) | TROMA-1 | |
Antibody | Cytokeratin 18 (CK18) | Abcam (Cambridge, MA) | ab668 | |
Antibody | Cytokeratin 5 (CK5) | Covance (San Diego, CA) | SIG3475 | |
Antibody | Cytokeratin 5 (CK5) | Covance | PRB-160P | |
Antibody | p63 | Santa Cruz (Dallas, TX) | sc-8431 | |
Antibody | GFP | Abcam | ab13970 | |
Antibody | GFP | Roche (St. Louis, MO) | 11814460001 | |
Antibody | BrdU | AbD Serotec MCA (Hercules, CA) | 2060 | |
Antibody | Foxa1 | Abcam | ab55178 | |
Antibody | Ki67 | eBiosciences (San Diego, CA) | 14–5698, clone SolA15 | |
Antibody | Cleaved-caspase-3 (CC3) | BD Pharmingen (San Jose, CA) | 559565 | |
Antibody | Prostate specific antigen (PSA) | Dako (Santa Clara, CA) | M0750, clone ER-PR8 | |
Antibody | Kras | Abcam | ab84573 | |
Antibody | Synaptophysin (Syn) | BD Transduction Laboratories (San Jose, CA) | 611880 | |
Antibody | Aurora A (Aurka) | Abcam | ab13824 | |
Antibody | Chromogranin A (ChrA) | Abcam | ab15160 | |
Antibody | Foxa2 | Abnova (Taiwan) | H00003170-M12 | |
Antibody | AMACR | Zeta Corp (Arcadia, CA) | Z2001 | |
Antibody | EpCAM | BioLegend | 118214 | |
Antibody | E-cadherin | eBiosciences | 46-3249-82 | |
Antibody | Nerve growth factor receptor (Ngfr) | BioLegend | 345108 | |
Antibody | Cd24 | BioLegend | 311008 | |
Antibody | Anterior gradient 2 (Agr2) | Abcam | ab1139894 | |
Antibody | EpCAM | BioLegend | 324208 | |
Sequence-based reagent | Nkx3.1 wild-type primers | PMID: 19741607 | DOI 10.1038/nature08361 | |
Sequence-based reagent | Nkx3.1CreERT2 primers | PMID: 19741607 | DOI 10.1038/nature08361 | |
Sequence-based reagent | CreERT2 primers | PMID: 19741607 | DOI 10.1038/nature08361 | |
Sequence-based reagent | R262R-YFP primers | PMID: 11299042 | | |
Sequence-based reagent | Ptenflox primers | PMID: 11691952 | DOI: 10.1126/science.1065518 | |
Sequence-based reagent | Pten wild-type primers | PMID: 11691952 | DOI: 10.1126/science.1065518 | |
Sequence-based reagent | KrasLSL-G12D primers | PMID: 11751630 | DOI:10.1101/gad.943001 | |
Sequence-based reagent | Kras wild-type primers | PMID: 11751630 | DOI:10.1101/gad.943001 | |
Sequence-based reagent | Arflox primers | PMID: 14676301 | DOI: 10.1084/jem.20031233 | |
Sequence-based reagent | Ar wild-type primers | PMID: 14676301 | DOI: 10.1084/jem.20031233 | |
Sequence-based reagent | Arflox (recombined) primers | PMID: 14676301 | DOI: 10.1084/jem.20031233 | |
Sequence-based reagent | Arflox (not recombined) primers | PMID: 14676301 | DOI: 10.1084/jem.20031233 | |
Commercial assay or kit | Tyramide amplification | ThermoFisher Scientific (Waltham, MA) | T20922 | |
Ccommercial assay or kit | Tyramide amplification | ThermoFisher Scientific | T30953 | |
Commercial assay or kit | Tyramide amplification | ThermoFisher Scientific | T30954 | |
Commercial assay or kit | Tyramide amplification | ThermoFisher Scientific | T20926 | |
Commercial assay or kit | Tyramide amplification | ThermoFisher Scientific | T20912 | |
Commercial assay or kit | ABC Elite | Vector Labs (Burlingame, CA) | pk6101 | |
Commercial assay or kit | Citrate-based antigen unmasking solution | Vector Labs | H3300 | |
Commercial assay or kit | Tris-based antigen unmasking solution | Vector Labs | H3301 | |
Commercial assay or kit | NovaRED | Vector Labs | SK3800 | |
Commercial assay or kit | CellTiter-Glo 3D | Promega (Madison, Wi) | G9681 | |
Commercial assay or kit | MagMAX−96forMicroarrays Total RNA Isolation Kit | Ambion (Waltham, MA) | Am1839 | Used the ‘no spin’ protocol for RNA purification |
Commercial assay or kit | TruSeq Stranded mRNA library prep kit | Illumina (San Diego, CA) | 20020595 | Library preparation was performed by the Columbia Genome Center using Illumina kits |
Chemical compound, drug | Tissue Tek OCT compound | VWR Scientific (Radnor, PA) | 25608–930 | |
Chemical compound, drug | Glutamax | Invitrogen (Waltham, MA) | 35050061 | |
Chemical compound, drug | Tamoxifen; TM | Sigma | T5648-5G | |
Chemical compound, drug | Gentamicin | Invitrogen | 15750–060 | |
Chemical compound, drug | Collagenase/hyaluronidase | STEMCELL Technologies (Cambridge, MA) | 07912 | |
Chemical compound, drug | Modified Hank's Balanced Salt Solution; HBSS | STEMCELL Technologies | 37150 | |
Chemical compound, drug | Dnase I | STEMCELL Technologies | 07900 | |
Chemical compound, drug | Y-27632 ROCK inhibitor | STEMCELL Technologies | 72307 | |
Chemical compound, drug | 10x Earle's Balanced Salt Solution | ThermoFisher Scientific | 14155063 | |
Chemical compound, drug | Hepatocyte medium supplemented withepidermal growth factor (EGF) | Corning (Corning, NY) | 355056 | |
Chemical compound, drug | Matrigel | ThermoFisher Scientific | 354234 | |
Chemical compound, drug | 0.25% trypsin-EDTA | STEMCELL Technologies | 07901 | |
Chemical compound, drug | FBS | ThermoFisher Scientific | 12676029 | |
Chemical compound, drug | DMEM/F12 | ThermoFisher Scientific | 11320033 | |
Chemical compound, drug | BrdU | Sigma | B5002 | |
Chemical compound, drug | Dispase | STEMCELL Technologies | 07913 | |
Chemical compound, drug | Dihydrotestosterone; DHT | Sigma | A8380 | |
Software, algorithm | Real time analysis; RTA | Illumina | https://support.illumina.com/sequencing/sequencing_software/real-time_analysis_rta.html | Base calling using this software was performed by the Columbia Genome Center |
Software, algorithm | bcl2fastq2 | Illumina | Ilumina: version 2.17 | The sequencing data was trimmed and converted to fastq format by the Columbia Genome Center |
Software, algorithm | Spliced Transcripts Alignment to a Reference (STAR) | PMID: 23104886 | Github: version 2.5.2b | Sequencing reads mapping to mouse genome (USCS/mm10) was performed by the Columbia Genome Center |
Software, algorithm | FeatureCounts | PMID: 24227677 | subread.sourceforge.net version: v1.5.0-p3 | Sequencing reads mapping to mouse genome (USCS/mm10) was performed by the Columbia Genome Center |
Software, algorithm | R-studio 0.99.902, R v3.3.0 | The R Foundation for Statistical Computing, ISBN 3-900051-07-0 | v3.3.0 | R language for statistical computing was used for data analysis and visualization |
Software, algorithm | homoloGene | NCBI | | |
Software, algorithm | Gene Set Enrichment Analysis | PMID: 16199517 | DOI 10.1073/pnas.0506580102 | GSEA was used to compares differential gene expression signatures |
Software, algorithm | Statistical Package for the Social Sciences; SPSS, Kolmogorov-Smirnov test, Arcsine transformation, Welch t-test, Fisher's Exact Test | IBM SPSS Statistics | | |
Software, algorithm | Histological grading of mouse prostate phenotypes | PMID: 12163397 | DOI 10.1016/S0002-9440 (10)64228-9 | |
Other | Mini-osmotic pump | Alzet (Cupertino, CA) | 0000298 | |
Other | 40 µm cell strainer | Falcon (Corning, NY) | Fisher Scientific 352340 | |
Other | 96-well Primaria plate | Corning | Fisher Scientific 353872 | |
Other | 6-well Primaria plate | Corning | Fisher Scientific 353846 | |
Other | 96-well CELLSTAR plate | Greiner Bio-One (Monroe, NC) | 655090 | |
Other | Lab-Tek Chamber Slide | Thermo Fisher Scientific | 154534 | |