Vaccine Design: Chimeras could help in the fight against leptospirosis
Leptospirosis is a disease that affects humans and animals worldwide, with a high prevalence in tropical and subtropical regions. The Leptospira bacteria that cause the disease colonize the kidneys of wild and domestic animals, and humans come into contact with these bacteria via the urine of infected animals – primarily rats in urban areas (Bharti et al., 2003). Symptoms of leptospirosis range from a mild influenza-like illness to severe infections that are fatal in over half of cases (Marotto et al., 1999). The lack of an effective vaccine has hampered efforts to prevent and control the disease.
Vaccines contain substances that allow the host immune system to learn how to recognize a particular pathogen. The parts of the pathogen that are recognized by the immune system are known as antigens, and immune molecules called antibodies bind to these antigens as part of the immune response.
Current vaccines against leptospirosis consist of whole inactivated bacterial cells, which induce the host immune system to produce antibodies against lipopolysaccharide molecules in the outer membrane of the bacteria. However, these vaccines only provide short-term immunity against the specific varieties of bacteria that are included (in their inactivated form) in the vaccine (Adler and de la Peña Moctezuma, 2010). Moreover, there are more than 250 serum varieties of Leptospira, so developing a vaccine that is effective against all of them with this methodology is unrealistic.
Advances in recombinant DNA techniques, allied to whole-genome sequencing and bioinformatics technologies, have led to a new approach for the identification of vaccine candidates. This approach, known as reverse vaccinology, uses the genome of the pathogen to predict the exact part of an antigen that antibodies interact with (Rappuoli et al., 2014). However, despite these advances, only a few antigens that protect against leptospirosis have been identified. Now, in eLife, Yung-Fu Chang and Robert Oswald of Cornell University and colleagues – including Ching-Lin Hsieh and Christopher Ptak as joint first authors – report a valuable step forward in efforts to develop an effective vaccine against pathogenic Leptospira (Hsieh et al., 2017).
LigB is a protein found on the surface of pathogenic forms of Leptospira (Matsunaga et al., 2003). It contains a short N-terminal domain (which anchors it to the outer membrane of the bacterium), twelve consecutive immunoglobulin-like domains (called LigB1-12), and a large non-immunoglobulin-like domain at the C-terminal end. The 12 central domains can be divided into a conserved region (LigB1-7) and a more variable region (LigB7-12; Ptak et al., 2014). LigB has been considered the most promising target for an effective vaccine (Conrad et al., 2017), but controversial results suggested only a partial immunization (Yan et al., 2009; Silva et al., 2007) or did not confer sterilizing immunity (protection against infection as well as disease; Evangelista et al., 2017).
Hsieh et al. combined structural biology with immunoreactive assays to determine the region of the LigB protein that most strongly induces an immune response. They used small-angle X-ray scattering to determine the low-resolution structure of the LigB1-12 region by working their way along this region, imaging five of the domains at a time. The final structure demonstrated an extensive surface area that is present across almost all of the 12 domains. This provides a high degree of exposure to the host immune system.
To confirm the capability of the protein to induce a host immune response, Hsieh et al. used two truncated forms of LigB – one that consisted of LigB1-7, and one formed of LigB7-12 – to generate a library of anti-LigB monoclonal antibodies. The bactericidal activity of these antibodies was evaluated by measuring how they interacted with LigB and how well they adhered to the surface of pathogenic Leptospira. These interactions were then correlated with the ability of the monoclonal antibodies to kill the bacteria in the presence of innate immune proteins called serum complement. By blocking important domains of LigB, monoclonal antibodies render Leptospira susceptible to attack and killing by complement proteins.
Using a technique called nuclear magnetic resonance spectroscopy, Hsieh et al. worked out the structure of the monoclonal antibody domains that have bactericidal activity. These data helped them to build chimera proteins from selected domains that were then used to immunize hamsters against virulent Leptospira (Figure 1). One chimera containing just three domains – LigB10-B7-B7 – afforded better protection to hamsters than longer constructs, such as LigB7-12 (which contains six domains).

Schematic representation of how structural biology contributes to vaccine design.
Sequencing the genome of a pathogen (top left) makes it possible to clone protein-based antigens – the features of the pathogen that are detected by antibodies in the host immune system. When mice are injected with the purified antigens, cells in their spleen produce monoclonal antibodies (mAbs) via cells called hybridomas. By studying the structure of the antibodies, and identifying the regions that interact most strongly with the antigens, researchers can build chimeric proteins from these regions. The effectiveness of the chimera as a vaccine for the pathogen can then be tested in animal models and human clinical trials.
The results of Hsieh et al. reinforce previous work that showed that structural biology represents a powerful tool for structure-based vaccine design. Their findings have significantly advanced our knowledge of LigB and represent an important step toward an improved vaccine against leptospirosis.
References
-
Leptospira and leptospirosisVeterinary Microbiology 140:287–296.https://doi.org/10.1016/j.vetmic.2009.03.012
-
Leptospirosis: a zoonotic disease of global importanceThe Lancet Infectious Diseases 3:757–771.https://doi.org/10.1016/S1473-3099(03)00830-2
-
LigB subunit vaccine confers sterile immunity against challenge in the hamster model of leptospirosisPLOS Neglected Tropical Diseases 11:e0005441.https://doi.org/10.1371/journal.pntd.0005441
-
Acute lung injury in leptospirosis: clinical and laboratory features, outcome, and factors associated with mortalityClinical Infectious Diseases 29:1561–1563.https://doi.org/10.1086/313501
Article and author information
Author details
Publication history
- Version of Record published: January 19, 2018 (version 1)
Copyright
© 2018, Santos et al.
This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.
Metrics
-
- 1,322
- Page views
-
- 145
- Downloads
-
- 2
- Citations
Article citation count generated by polling the highest count across the following sources: Crossref, PubMed Central, Scopus.
Download links
Downloads (link to download the article as PDF)
Open citations (links to open the citations from this article in various online reference manager services)
Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)
Further reading
-
- Biochemistry and Chemical Biology
- Structural Biology and Molecular Biophysics
The Neuronal Calcium Sensor 1, an EF-hand Ca2+ binding protein, and Ric-8A coregulate synapse number and probability of neurotransmitter release. Recently, the structures of Ric-8A bound to Ga have revealed how Ric-8A phosphorylation promotes Ga recognition and activity as a chaperone and guanine nucleotide exchange factor. However, the molecular mechanism by which NCS-1 regulates Ric-8A activity and its interaction with Ga subunits is not well understood. Given the interest in the NCS-1/Ric-8A complex as a therapeutic target in nervous system disorders, it is necessary to shed light on this molecular mechanism of action at atomic level. We have reconstituted NCS-1/Ric-8A complexes to conduct a multimodal approach and determine the sequence of Ca2+ signals and phosphorylation events that promote the interaction of Ric-8A with Ga. Our data show that the binding of NCS-1 and Ga to Ric-8A are mutually exclusive. Importantly, NCS-1 induces a structural rearrangement in Ric-8A that traps the protein in a conformational state that is inaccessible to Casein Kinase II-mediated phosphorylation, demonstrating one aspect of its negative regulation of Ric-8A-mediated G-protein signaling. Functional experiments indicate a loss of Ric-8A GEF activity towards Ga when complexed with NCS-1, and restoration of nucleotide exchange activity upon increasing Ca2+ concentration. Finally, the high-resolution crystallographic data reported here define the NCS-1/Ric-8A interface and will allow the development of therapeutic synapse function regulators with improved activity and selectivity.
-
- Cell Biology
- Structural Biology and Molecular Biophysics
Previously we showed that 2D template matching (2DTM) can be used to localize macromolecular complexes in images recorded by cryogenic electron microscopy (cryo-EM) with high precision, even in the presence of noise and cellular background (Lucas et al., 2021; Lucas et al., 2022). Here, we show that once localized, these particles may be averaged together to generate high-resolution 3D reconstructions. However, regions included in the template may suffer from template bias, leading to inflated resolution estimates and making the interpretation of high-resolution features unreliable. We evaluate conditions that minimize template bias while retaining the benefits of high-precision localization, and we show that molecular features not present in the template can be reconstructed at high resolution from targets found by 2DTM, extending prior work at low-resolution. Moreover, we present a quantitative metric for template bias to aid the interpretation of 3D reconstructions calculated with particles localized using high-resolution templates and fine angular sampling.