Antibody | anti-Flk1(VEGFR2) (A-3) (Mouse monoclonal) | Santa Cruz | sc6251 RRID:AB_628431 | WB(1:1000) |
Antibody | anti-DLL4(H-70) (Rabbit polyclonal) | Santa Cruz | sc28915 RRID:AB_2092978 | WB(1:1000) |
Antibody | anti-Sox17 (Goat polyclonal) | R and D Systems | AF1924 RRID:AB_355060 | WB(1:1000) |
Antibody | anti-p-VEGFR2 (Tyr1059)(D5A6) (Rabbit monoclonal) | Cell Signalling | 3817 RRID:AB_2132351 | WB(1:1000) |
Antibody | anti-p-VEGFR2 (Tyr1175) (19A10) (Rabbit monoclonal) | Cell Signalling | 2478 RRID:AB_331377 | WB(1:1000) |
Antibody | anti-p-ERK1/2 (Thr202/Tyr204) (197G2) (Rabbit monoclonal) | Cell Signalling | 4377 RRID:AB_331775 | WB(1:1000) |
CyeAntibody | anti-ERK1/2 (137F5) (Rabbit monoclonal) | Cell Signalling | 4695 RRID:AB_390779 | WB(1:1000) |
Antibody | anti-p-p38 (Thr180/Tyr182) (Rabbit polyclonal) | Cell Signalling | 9211 RRID:AB_331641 | WB(1:1000) |
Antibody | anti-p38 (A-12) (Mouse monoclonal) | Santa Cruz | sc7972 RRID:AB_620879 | WB(1:1000) |
Antibody | anti- p85α (Z-8) (rabbit polyclonal) | Santa Cruz | sc423 RRID:AB_632211 | WB(1:1000) |
Antibody | anti- p-PI3-kinase p85 α (Tyr 508) (goat polyclonal) | Santa Cruz | sc12929 RRID:AB_2252313 | WB(1:1000) |
Antibody | anti-CCN1 (Rabbit polyclonal) | Abcam | Ab24448 RRID:AB_2088724 | WB(1:1000) IHC (1:200) |
Antibody | anti-CCN1 (Rabbit polyclonal) | Novus Biologicals | NB100-356 RRID:AB_10000986 | (1:1000) neutralization |
Antibody | anti-integrin αvβ3 (Mouse monoclonal) | Novus Biologicals | NB600-1342 RRID:AB_10003443 | WB(1:1000) |
Antibody | anti-p-STAT-3 (Tyr705) (D3A7) (Rabbit monoclonal) | Cell signalling | 9145 RRID:AB_2491009 | WB(1:1000) |
Antibody | anti-p-STAT1(Tyr701) (58D6) (Rabbit monoclonal) | Cell signalling | 9167 RRID:AB_561284 | WB(1:1000) |
Antibody | anti-STAT3 (79D7) (Rabbit monoclonal) | Cell signalling | 4904 RRID:AB_331269 | WB(1:1000) |
Antibody | anti-STAT1 (Rabbit polyclonal) | Cell signalling | 9172 RRID:AB_2198300 | WB(1:1000) |
Antibody | anti-p-YAP (Ser127) (Rabbit polyclonal) | Cell signalling | 4911 RRID:AB_2218913 | WB(1:1000) |
Antibody | anti-YAP/TAZ (D24E4) (Rabbit monoclonal) | Cell signalling | 8418 RRID:AB_10950494 | WB(1:1000) |
Antibody | anti-p-LATS1 (Thr1079)(D57D3) (Rabbit monoclonal) | Cell signalling | 8654 RRID:AB_10971635 | WB(1:1000) IF (1:200) |
Antibody | anti-LATS1(C66B5) (Rabbit monoclonal) | Cell signalling | 3477 RRID:AB_2133513 | WB(1:1000) |
Antibody | Alexa-488–conjugated anti-isolectin B4 | Invitrogen | I21411 RRID:AB_2314662 | IHC (1:200) |
Antibody | anti-VEGF (Goat polyclonal) | R and D Systems | AF564 RRID:AB_2212821 | (1:1000) neutralization |
Antibody | anti-vinculin (EPR8185) (Rabbit monoclonal) | Abcam | ab196579 RRID:AB_2810877 | IF (1:200) |
Antibody | Cdc42 (Mouse monoclonal) | Cell signalling | 8747 RRID:AB_2810881 | WB(1:1000) |
Antibody | Integrin β3 blocking IgG (Mouse monoclonal) | Millipore | MAB1976 RRID:AB_2296419 | Neutralization |
Antibody | Anti-GFP (B-2) (Mouse monoclonal) | Santa Cruz | sc9996 RRID:AB_627695 | WB(1:1000) |
Antibody | anti-CD31 (Mouse monoclonal) | BD Biosciences | 553370 RRID:AB_2638986 | IF (1:200) |
Antibody | Anti-CD34 (Rabbit polyclonal) | Boster | PA1334 RRID:AB_2810878 | IF (1:200) |
Antibody | Anti-DLL4 (Rat-monoclonal) | R and D systems | MAB1389 RRID:AB_2092985 | IF (1:200) |
Other | Alexa-488-phalloidin | Invitrogen | A12379 | IHC (1:200) |
Chemical compound, drug | JNK Inhibitor II anthra[1,9 cd]pyrazol-6(2H)-one-1,9-pyrazoloanthrone (SP600125) | Calbiochem | 420119 | |
Chemical compound, drug | P38 MAP Kinase Inhibitor 4-(4-fluorophenyl)−2-(4-methylsulfinylphenyl)−5-(4-pyridyl)1H-imidazole (SB203580) | Calbiochem | 559389 | |
Chemical compound, drug | 2′-amino-3′-methoxyflavone (PD98059) | Calbiochem | 513000 | |
Chemical compound, drug | 2-(4-morpholinyl)−8-phenyl-4H-1-benzopyran-4-one (LY294002) | Calbiochem | 440202 | |
Chemical compound, drug | Verteporfin | Sigma-Aldrich | SML0534 | |
Chemical compound, drug | Cyclo(RGDfK) | Selleckchem | S7834 | |
Peptide recombinant protein | CCN1 | R and D Systems | 4055 | |
Peptide recombinant protein | Vitronectin | Corning | 354238 | |
Peptide recombinant protein | fibronectin | Corning | 354008 | |
Commercial assay, or kit | Active Cdc42 detection kit | Cell Signalling | 11859 | |
Recombinant DNA reagent | pEG-DIAPH1 | Pro Jung Weon Lee (College of Pharmacy, Seoul National University) | | |
Recombinant DNA reagent | pEG-DIAPH1 ΔN3 | Prof. Jung Weon Lee (College of Pharmacy, Seoul National University) | | |
Recombinant DNA reagent | pGL3-CCN1 (cloned on VE-cadherin promoter) | This paper | | Progenitors: PCR, pGL3 |
Recombinant DNA reagent | pGL3-DLL4 luciferase plasmid | Prof. Young Geun Kwon Yonsei University | | |
Recombinant DNA reagent | pRL-SV40 plasmid | Promega | E2231 | |
Sequence-based reagent | siRNA:siCCN1 | Qiagen | SI03053477 SI03028655 SI02626428 SI02626421 | |
Sequence-based reagent | siRNA: siIntegrin β3 | Qiagen | SI02664095 SI02628094 SI00034188 SI00034174 | |
Sequence-based reagent | Negative control siRNA | Qiagen | SI03650325 | |
Cell line (H. sapiens) | HUVEC | ATCC | CRL-1730 RRID:CVCL_2959 | |
Cell line (H. sapiens) | EA.hy926 | ATCC | CRL-2922 RRID:CVCL_3901 | |
Cell line (M. musculus) | LCC | ATCC | CRL-1642 RRID:CVCL_4358 | |
Transgenic mice | Ccn1-TG (Chd5:Ccn1, C57BL/6J) | Macrogen, Seoul, Korea | | |
Transgenic zebrafish (D. rerio) | hemizygous TG (flk-1:EGFP)s843 | Korea Zebrafish Organogenesis Mutant Bank (ZOMB) at Kyungpook National University Jin et al., 2005 | | |
Sequence-based reagent | ccn1 MO (D. rerio) 5′-CTCCGCTGACACACACACACAGGAC-3′ | Gene-Tools, Philomath | | ccn1-l2, ENSDARG00000099985 |
Software, algorithm | Prism | Graphpad Software | RRID:SCR_002798 | |
Software, algorithm | ImageJ | https://imagej.nih.gov/ij/ | RRID:SCR_003070 | |
Software, algorithm | edgeR package | http://www.bioconductor.org./help/search/index.html?q=edger+package/ Robinson et al., 2010 | RRID:SCR_012802 | |
Software, algorithm | quantile normalisation | http://bioconductor.org Bolstad et al., 2003 | RRID:SCR_001786 | |
Software, algorithm | Kaplan–Meier estimation | https://www.xlstat.com/en/solutions/features/kaplan-meier-analysis Bewick et al., 2004 | | |
NCI Genomic Data Commons (GDC) | Data Portal | https://gdc-portal.nci.nih.gov Grossman et al., 2016 | | |