Electric Fish: Learning to generalize

Electric fish are able to take what they have learnt about sensory processing in certain situations and apply it in other situations.
  1. André Longtin  Is a corresponding author
  1. University of Ottawa, Canada

To sense our environment our nervous system must be able to distinguish between signals generated by our bodies and signals from our surroundings. Did my head or eyes move, or did my surroundings move? Was my arm moved by myself or by an external agent? To distinguish between these types of signals our nervous system combines a motor control circuit (which tells the body to do something) and one or more sensory circuits (which relay information from various inputs) to create an internal model of the world that allows us to separate the new information in these inputs from information that is not useful.

Understanding how this happens, and solving other amusing puzzles (such as why we can't tickle ourselves), means laying bare the circuitry that the brain uses to learn. In particular, we want to know if these circuits always have to learn to adapt to individual contexts, or can the changes learnt in one context be applied in other contexts that have not been experienced yet? Now, in eLife, Conor Dempsey, Larry Abbott and Nathaniel Sawtell of Columbia University report that weakly electric fish are able to generalize what they learn in one context and apply it in other contexts (Dempsey et al., 2019).

Animals can experience their environment through active or passive sensing. In passive sensing, an animal simply senses stimuli from the environment, including stimuli from other animals. In active sensing, the animal emits signals to sample its environment (e.g., sonar in bats), or modifies its body position to generate responses in primary sensory receptors (e.g., whiskers in rodents). In addition to locating and identifying objects, the signal emitted during active sensing has the potential to interfere with the passive signaling system, which could put the animal's life in danger. However, if the relevant passive sensory circuits are 'warned' about the active sensing pulses in advance, the problem of interference can be countered.

In the 1950s, Erich Von Holst and Roger Sperry independently investigated the 'corollary discharge': this is a copy of a motor command that is sent to a sensory region of the brain every time a motor command is sent to some region of the body. Von Holst and Sperry suggested that a key role of this discharge is to compensate for the effects of unwanted inputs to sensory circuits caused by the motor command. This compensation could be achieved by creating a 'negative image' that cancels out the unwanted inputs, thus leaving behind new signals of interest from the environment.

Weakly electric fish perform both active and passive sensing (Figure 1). They generate a few active pulses per second when they are at rest, and up to 60 pulses per second when they are hunting, with each active pulse inducing an electric field in the water and surrounding objects. Active electroreceptors in the skin detect pulses that have been shaped by nearby objects. In contrast, the passive electrosensing system senses the weak electric signals produced by other animals. However, these signals can become contaminated by the active pulses: indeed, each time an active pulse arrives at a passive electroreceptor, the receptor 'rings' for hundreds of milliseconds during which time any signals from potential prey are masked.

Active and passive sensing in weakly electric fish.

Motor commands sent from the pacemaker nucleus in the brain of an electric fish (green region in inset) cause the electric organ in the tail (red region) to emit electric pulses (blue arrows) that travel through the surrounding water. These pulses are shaped by nearby objects and then detected by active electroreceptors (not shown) in the skin. Electric fish also have passive electroreceptors that detect the weak electric signals caused by the muscle movements of other creatures, including the crustaceans that electric fish feed upon: the signals from these receptors are sent to principal cells in a region of the hindbrain called the passive electrosensory lobe (ELL). Electric fish have evolved a sophisticated method to prevent the electric pulses produced by their active sense from interfering with the passive detection of, for example, signals due to body movements made by prey. For each electric pulse it sends, the pacemaker nucleus (top right) also sends a 'corollary discharge' signal along mossy fibers to granule cells in the cerebellum. This signal is processed by the granule cells, and an array of precisely timed signals is sent along parallel fibers to the principal cells in the ELL. These signals alter the strength of the synapses between the parallel fibres and the principal cells in a way that creates a 'negative image' of the original active pulse: the production of the negative image relies on a process known as anti-Hebbian spike time plasticity (STDP). The cells in the ELL use the negative image to subtract the effect of the active pulses from the signals they are receiving from the passive electroreceptors. Any useful information that remains in the signal is forwarded to other regions of the brain. Electric fish tend to emit a few pulses per second when they are at rest, and up to about 60 pulses per second when they are hunting. Dempsey et al. show that electric fish of the species Gnathonemus petersii (aka Peter's elephant-nose fish) learn to cancel images at low pulse rates, and are able to generalize this learning to automatically cancel images at the higher pulse rates that they use during hunting.

IMAGE: G. petersii: J Jury derivative work: Jmvgpartner [CC BY-SA 3.0].

Pulses emanate from an electric organ in the tail, which receives motor commands from a pacemaker in the brain. Simultaneously, a corollary discharge is sent by that pacemaker to electrosensory cells in the hindbrain (see Figure 1). These cells then subtract the negative image produced by the corollary discharge from the total sensory input received from the electroreceptors (Bell, 1989; Bell et al., 1993; Roberts and Bell, 2000). In an environment that is devoid of features, the signal will be completely nulled by the subtraction. But, if features are present, a signal will remain after subtraction and this signal will be sent to the relevant higher brain regions so that the fish can react as necessary.

To date the cancellation of active sense pulses by electrosensory cells has only been analyzed at low pulse rates, and it was not clear if or how cancellation worked during hunting when pulse rates are higher. Dempsey, Abbott and Sawtell have now recorded the activity of the different cell populations in the corollary discharge pathway for a range of pulse rates. The signals they recorded were then integrated into an expanded version of a computational model they have built (Kennedy et al., 2014). This showed that the generalization of this particular response from low pulse rates to high pulse rates depended on at least two factors: i) the regularization of synaptic plasticity (this well-known machine learning technique avoids reproducing the finer fluctuations in the data, as doing so is detrimental to generalization); ii) nonlinear effects that make the dependence of the activity of the corollary discharge on pulse rate match the dependence of the activity of the electroreceptors on pulse rate.

Similar changes to those observed by Dempsey et al. in the corollary discharge pathway may be involved in how we predict the sensory effects of our own movements and distinguish these from environmental induced effects (Mejias et al., 2013; Straka et al., 2018). The search for synaptic regularization, the effect of natural learning conditions, and the integration of multiple sensory inputs by individual cerebellum cells (Ishikawa et al., 2015) are exciting avenues that will further impact how we think about human motor learning.

References

    1. Bell CC
    (1989)
    Sensory coding and corollary discharge effects in mormyrid electric fish
    The Journal of Experimental Biology 146:229.
    1. Roberts PD
    2. Bell CC
    (2000)
    Computational consequences of temporally asymmetric learning rules: II. Sensory image cancellation
    Journal of Computational Neuroscience 9:67–83.

Article and author information

Author details

  1. André Longtin

    André Longtin is in the Department of Physics and the Centre for Neural Dynamics, University of Ottawa, Ottawa, Canada

    For correspondence
    alongtin@uottawa.ca
    Competing interests
    No competing interests declared
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-0678-9893

Publication history

  1. Version of Record published:

Copyright

© 2019, Longtin

This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 1,264
    views
  • 92
    downloads
  • 0
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. André Longtin
(2019)
Electric Fish: Learning to generalize
eLife 8:e46651.
https://doi.org/10.7554/eLife.46651
  1. Further reading

Further reading

    1. Neuroscience
    Christine Ahrends, Mark W Woolrich, Diego Vidaurre
    Tools and Resources

    Predicting an individual’s cognitive traits or clinical condition using brain signals is a central goal in modern neuroscience. This is commonly done using either structural aspects, such as structural connectivity or cortical thickness, or aggregated measures of brain activity that average over time. But these approaches are missing a central aspect of brain function: the unique ways in which an individual’s brain activity unfolds over time. One reason why these dynamic patterns are not usually considered is that they have to be described by complex, high-dimensional models; and it is unclear how best to use these models for prediction. We here propose an approach that describes dynamic functional connectivity and amplitude patterns using a Hidden Markov model (HMM) and combines it with the Fisher kernel, which can be used to predict individual traits. The Fisher kernel is constructed from the HMM in a mathematically principled manner, thereby preserving the structure of the underlying model. We show here, in fMRI data, that the HMM-Fisher kernel approach is accurate and reliable. We compare the Fisher kernel to other prediction methods, both time-varying and time-averaged functional connectivity-based models. Our approach leverages information about an individual’s time-varying amplitude and functional connectivity for prediction and has broad applications in cognitive neuroscience and personalised medicine.

    1. Neuroscience
    Simonas Griesius, Amy Richardson, Dimitri Michael Kullmann
    Research Article

    Non-linear summation of synaptic inputs to the dendrites of pyramidal neurons has been proposed to increase the computation capacity of neurons through coincidence detection, signal amplification, and additional logic operations such as XOR. Supralinear dendritic integration has been documented extensively in principal neurons, mediated by several voltage-dependent conductances. It has also been reported in parvalbumin-positive hippocampal basket cells, in dendrites innervated by feedback excitatory synapses. Whether other interneurons, which support feed-forward or feedback inhibition of principal neuron dendrites, also exhibit local non-linear integration of synaptic excitation is not known. Here, we use patch-clamp electrophysiology, and two-photon calcium imaging and glutamate uncaging, to show that supralinear dendritic integration of near-synchronous spatially clustered glutamate-receptor mediated depolarization occurs in NDNF-positive neurogliaform cells and oriens-lacunosum moleculare interneurons in the mouse hippocampus. Supralinear summation was detected via recordings of somatic depolarizations elicited by uncaging of glutamate on dendritic fragments, and, in neurogliaform cells, by concurrent imaging of dendritic calcium transients. Supralinearity was abolished by blocking NMDA receptors (NMDARs) but resisted blockade of voltage-gated sodium channels. Blocking L-type calcium channels abolished supralinear calcium signalling but only had a minor effect on voltage supralinearity. Dendritic boosting of spatially clustered synaptic signals argues for previously unappreciated computational complexity in dendrite-projecting inhibitory cells of the hippocampus.