Code for reproducing the statistical model fitting and anonymised patient data are available at https://github.com/tc13/transmission-dynamics-klebsiella (copy archived at https://github.com/elifesciences-publications/transmission-dynamics-klebsiella). The code for the agent based model and parameter values for forward simulations are available at https://github.com/tc13/ward-infection-ABM (copy archived athttps://github.com/elifesciences-publications/ward-infection-ABM). Short read sequence data is available from NCBI under accession numbers PRJNA395864 and PR600JEB24970. Genomic data can be visualised in the Microreact project https://microreact.org/project/BV05TIXkU.
NCBI BioProjectID PRJEB24970. Whole genome sequencing of Klebsiella pneumoniae collected from patients and environment in a hospital in Cambodia.
NCBI BioProjectID PRJNA395864. Klebsiella pneumoniae on a Cambodian neonatal unit.