SLAMF6 deficiency augments tumor killing and skews towards an effector phenotype revealing it as a novel T cell checkpoint

  1. Emma Hajaj  Is a corresponding author
  2. Galit Eisenberg
  3. Shiri Klein
  4. Shoshana Frankenburg
  5. Sharon Merims
  6. Inna Ben David
  7. Thomas Eisenhaure
  8. Sarah E Henrickson
  9. Alexandra Chloé Villani
  10. Nir Hacohen
  11. Nathalie Abudi
  12. Rinat Abramovich
  13. Jonathan E Cohen
  14. Tamar Peretz
  15. Andre Veillette
  16. Michal Lotem
  1. Hadassah Hebrew University Hospital, Israel
  2. Broad Institute of MIT and Harvard, United States
  3. The Children's Hospital of Philadelphia, United States
  4. McGill University, Canada

Abstract

SLAMF6 is a homotypic receptor of the Ig-superfamily whose exact role in immune modulation has remained elusive. Its constitutive expression on resting and activated T cells precludes it from being a bona fide exhaustion marker. By breeding Pmel-1 mice with SLAMF6 -/- mice, we generated donors for T cells lacking SLAMF6 and expressing a transgenic TCR for gp100-melanoma antigen. Activated Pmel-1xSLAMF6 -/- CD8+ T cells displayed improved polyfunctionality and strong tumor cytolysis. T-bet was the dominant transcription factor in Pmel-1 x SLAMF6 -/- cells, and upon activation, they acquired an effector-memory phenotype. Adoptive transfer of Pmel-1 x SLAMF6 -/- T cells to melanoma-bearing mice resulted in lasting tumor regression in contrast to temporary responses achieved with Pmel-1 T cells. LAG-3 expression was elevated in the SLAMF6 -/- cells, and the addition of the LAG-3-blocking antibody to the adoptive transfer protocol improved the SLAMF6 -/- T cells and expedited the anti-tumor response even further. The results from this study support the notion that SLAMF6 is an inhibitory immune receptor whose absence enables powerful CD8+ T cells to eradicate tumors.

Data availability

Data have been deposited to dbGaP under the accession code phs000815.v2.p1. To access these data users may apply for access to the dbGaP data repository (https://www.ncbi.nlm.nih.gov/books/NBK482114/).

The following data sets were generated

Article and author information

Author details

  1. Emma Hajaj

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    For correspondence
    emma.hajaj@mail.huji.ac.il
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-2437-3146
  2. Galit Eisenberg

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  3. Shiri Klein

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  4. Shoshana Frankenburg

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  5. Sharon Merims

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  6. Inna Ben David

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  7. Thomas Eisenhaure

    Broad Institute of MIT and Harvard, Boston, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-3999-3540
  8. Sarah E Henrickson

    Department of Pediatrics, Division of Allergy and Immunology, The Children's Hospital of Philadelphia, Philadelphia, United States
    Competing interests
    The authors declare that no competing interests exist.
  9. Alexandra Chloé Villani

    Broad Institute of MIT and Harvard, Cambridge, United States
    Competing interests
    The authors declare that no competing interests exist.
  10. Nir Hacohen

    Broad Institute of MIT and Harvard, Boston, United States
    Competing interests
    The authors declare that no competing interests exist.
  11. Nathalie Abudi

    Goldyne Savad Institute of Gene Therapy, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  12. Rinat Abramovich

    Goldyne Savad Institute of Gene Therapy, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  13. Jonathan E Cohen

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  14. Tamar Peretz

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.
  15. Andre Veillette

    McGill University, Montréal, Canada
    Competing interests
    The authors declare that no competing interests exist.
  16. Michal Lotem

    Sharett Institute of Oncology, Hadassah Hebrew University Hospital, Jerusalem, Israel
    Competing interests
    The authors declare that no competing interests exist.

Funding

Dr. Miriam and Shelodn G Adelson Medical Research Foundation

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

Fred Lovejoy Resident Research Fund Awards

  • Sarah E Henrickson

International Development Research Centre (108403)

  • Andre Veillette

Canadian Institutes of Health Research (FDN-143338)

  • Andre Veillette

Melanoma Research Alliance

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

Canadian Institutes of Health Research

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

International Development Research Centre

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

Israel Science Foundation

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

Azrieli Foundation

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

Deutsche Forschungsgemeinschaft

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

Rosetrees Trust

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

Perlstein family fund

  • Emma Hajaj
  • Galit Eisenberg
  • Shiri Klein
  • Shoshana Frankenburg
  • Sharon Merims
  • Inna Ben David
  • Jonathan E Cohen
  • Michal Lotem

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Yutaka Kawakami, Keio University School of Medicine, Japan

Ethics

Animal experimentation: Animal studies were approved by the Institutional Review Board - Authority for biological and biomedical models, Hebrew University, Jerusalem, Israel (MD-14602-5 and MD-15421-5).

Human subjects: Human samples were collected according to the approved IRB: Partners 2006-P-002051 in the Broad Institute of MIT and Harvard, Cambridge, Massachusetts.

Version history

  1. Received: October 7, 2019
  2. Accepted: February 11, 2020
  3. Accepted Manuscript published: March 3, 2020 (version 1)
  4. Version of Record published: March 16, 2020 (version 2)

Copyright

© 2020, Hajaj et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 5,418
    views
  • 743
    downloads
  • 22
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Emma Hajaj
  2. Galit Eisenberg
  3. Shiri Klein
  4. Shoshana Frankenburg
  5. Sharon Merims
  6. Inna Ben David
  7. Thomas Eisenhaure
  8. Sarah E Henrickson
  9. Alexandra Chloé Villani
  10. Nir Hacohen
  11. Nathalie Abudi
  12. Rinat Abramovich
  13. Jonathan E Cohen
  14. Tamar Peretz
  15. Andre Veillette
  16. Michal Lotem
(2020)
SLAMF6 deficiency augments tumor killing and skews towards an effector phenotype revealing it as a novel T cell checkpoint
eLife 9:e52539.
https://doi.org/10.7554/eLife.52539

Share this article

https://doi.org/10.7554/eLife.52539

Further reading

    1. Cancer Biology
    2. Cell Biology
    Camille Dantzer, Justine Vaché ... Violaine Moreau
    Research Article

    Immune checkpoint inhibitors have produced encouraging results in cancer patients. However, the majority of ß-catenin-mutated tumors have been described as lacking immune infiltrates and resistant to immunotherapy. The mechanisms by which oncogenic ß-catenin affects immune surveillance remain unclear. Herein, we highlighted the involvement of ß-catenin in the regulation of the exosomal pathway and, by extension, in immune/cancer cell communication in hepatocellular carcinoma (HCC). We showed that mutated ß-catenin represses expression of SDC4 and RAB27A, two main actors in exosome biogenesis, in both liver cancer cell lines and HCC patient samples. Using nanoparticle tracking analysis and live-cell imaging, we further demonstrated that activated ß-catenin represses exosome release. Then, we demonstrated in 3D spheroid models that activation of β-catenin promotes a decrease in immune cell infiltration through a defect in exosome secretion. Taken together, our results provide the first evidence that oncogenic ß-catenin plays a key role in exosome biogenesis. Our study gives new insight into the impact of ß-catenin mutations on tumor microenvironment remodeling, which could lead to the development of new strategies to enhance immunotherapeutic response.

    1. Cancer Biology
    Fang Huang, Zhenwei Dai ... Yang Wang
    Research Article

    Aberrant alternative splicing is well-known to be closely associated with tumorigenesis of various cancers. However, the intricate mechanisms underlying breast cancer metastasis driven by deregulated splicing events remain largely unexplored. Here, we unveiled that RBM7 is decreased in lymph node and distant organ metastases of breast cancer as compared to primary lesions and low expression of RBM7 is correlated with the reduced disease-free survival of breast cancer patients. Breast cancer cells with RBM7 depletion exhibited an increased potential for lung metastasis compared to scramble control cells. The absence of RBM7 stimulated breast cancer cell migration, invasion, and angiogenesis. Mechanistically, RBM7 controlled the splicing switch of MFGE8, favoring the production of the predominant isoform of MFGE8, MFGE8-L. This resulted in the attenuation of STAT1 phosphorylation and alterations in cell adhesion molecules. MFGE8-L exerted an inhibitory effect on the migratory and invasive capability of breast cancer cells, while the truncated isoform MFGE8-S, which lack the second F5/8 type C domain had the opposite effect. In addition, RBM7 negatively regulates the NF-κB cascade and an NF-κB inhibitor could obstruct the increase in HUVEC tube formation caused by RBM7 silencing. Clinically, we noticed a positive correlation between RBM7 expression and MFGE8 exon7 inclusion in breast cancer tissues, providing new mechanistic insights for molecular-targeted therapy in combating breast cancer.