S-phase-independent silencing establishment in Saccharomyces cerevisiae
Abstract
The establishment of silent chromatin, a heterochromatin-like structure at HML and HMR in Saccharomyces cerevisiae, depends on progression through S phase of the cell cycle, but the molecular nature of this requirement has remained elusive despite intensive study. Using high-resolution chromatin immunoprecipitation and single-molecule RNA analysis, we found that silencing establishment proceeded via gradual repression of transcription in individual cells over several cell cycles, and that the cell-cycle-regulated step was downstream of Sir protein recruitment. In contrast to prior results, HML and HMR had identical cell-cycle requirements for silencing establishment, with no apparent contribution from a tRNA gene adjacent to HMR. We identified the cause of the S-phase requirement for silencing establishment: removal of transcription-favoring histone modifications deposited by Dot1, Sas2, and Rtt109. These results revealed that silencing establishment was absolutely dependent on the cell-cycle-regulated interplay between euchromatic and heterochromatic histone modifications.
Data availability
Sequencing data have been deposited in the GEO under the accession number GSE150737.
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S-phase independent silencing establishment in Saccharomyces cerevisiaeNCBI Gene Expression Omnibus, GSE150737.
Article and author information
Author details
Funding
National Institutes of Health (R01 GM31105)
- Jasper Rine
National Institutes of Health (R01 GM120374)
- Jasper Rine
National Institutes of Health (T32 GM007127)
- Davis Goodnight
National Institutes of Health (T32 HG000047)
- Davis Goodnight
National Science Foundation (Graduate Research Fellowship,1752814)
- Davis Goodnight
The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
Reviewing Editor
- Tim Formosa, University of Utah School of Medicine, United States
Version history
- Received: May 14, 2020
- Accepted: July 18, 2020
- Accepted Manuscript published: July 20, 2020 (version 1)
- Version of Record published: August 3, 2020 (version 2)
Copyright
© 2020, Goodnight & Rine
This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.
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