Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos

  1. Joshua F Coulcher
  2. Agnès Roure
  3. Rafath Chowdhury
  4. Méryl Robert
  5. Laury Lescat
  6. Aurélie Bouin
  7. Juliana Carvajal Cadavid
  8. Hiroki Nishida
  9. Sébastien Darras  Is a corresponding author
  1. CNRS, France
  2. Albert Einstein college of medicine, United States
  3. Osaka University, Japan

Abstract

Ascidians with very similar embryos but highly divergent genomes are thought to have undergone extensive developmental system drift. We compared, in four species (Ciona and Phallusia for Phlebobranchia, Molgula and Halocynthia for Stolidobranchia), gene expression and gene regulation for a network of six transcription factors regulating peripheral nervous system (PNS) formation in Ciona. All genes, but one in Molgula, were expressed in the PNS with some differences correlating with phylogenetic distance. Cross-species transgenesis indicated strong levels of conservation, except in Molgula, in gene regulation despite lack of sequence conservation of the enhancers. Developmental system drift in ascidians is thus higher for gene regulation than for gene expression; and is impacted not only by phylogenetic distance, but also in a clade-specific manner and unevenly within a network. Finally, considering that Molgula is divergent in our analyses, this suggests deep conservation of developmental mechanisms in ascidians after 390 My of separate evolution.

Data availability

All data generated or analyzed during this study are included in the manuscript and supporting files.

Article and author information

Author details

  1. Joshua F Coulcher

    BIOM, CNRS, Banyuls-sur-mer, France
    Competing interests
    The authors declare that no competing interests exist.
  2. Agnès Roure

    BIOM, CNRS, Banyuls-sur-mer, France
    Competing interests
    The authors declare that no competing interests exist.
  3. Rafath Chowdhury

    BIOM, CNRS, Banyuls-sur-mer, France
    Competing interests
    The authors declare that no competing interests exist.
  4. Méryl Robert

    BIOM, CNRS, Banyuls-sur-mer, France
    Competing interests
    The authors declare that no competing interests exist.
  5. Laury Lescat

    dept of Developmental and molecular Biology, Albert Einstein college of medicine, Bronx, United States
    Competing interests
    The authors declare that no competing interests exist.
  6. Aurélie Bouin

    BIOM, CNRS, Banyuls-sur-mer, France
    Competing interests
    The authors declare that no competing interests exist.
  7. Juliana Carvajal Cadavid

    BIOM, CNRS, Banyuls-sur-mer, France
    Competing interests
    The authors declare that no competing interests exist.
  8. Hiroki Nishida

    Department of Biological Sciences, Osaka University, Toyonaka, Japan
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-7249-1668
  9. Sébastien Darras

    BIOM, CNRS, Banyuls-sur-mer, France
    For correspondence
    sebastien.darras@obs-banyuls.fr
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-0590-0062

Funding

Agence Nationale de la Recherche (ANR-11-JSV2-007)

  • Sébastien Darras

Agence Nationale de la Recherche (ANR-17-CE13-0027)

  • Sébastien Darras

Fondation des Treilles

  • Joshua F Coulcher

Centre National de la Recherche Scientifique (DBM2020)

  • Sébastien Darras

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Shigehiro Kuraku, RIKEN Center for Biosystems Dynamics Research, Japan

Version history

  1. Received: May 21, 2020
  2. Accepted: November 13, 2020
  3. Accepted Manuscript published: November 16, 2020 (version 1)
  4. Version of Record published: December 2, 2020 (version 2)

Copyright

© 2020, Coulcher et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 1,240
    views
  • 188
    downloads
  • 10
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Joshua F Coulcher
  2. Agnès Roure
  3. Rafath Chowdhury
  4. Méryl Robert
  5. Laury Lescat
  6. Aurélie Bouin
  7. Juliana Carvajal Cadavid
  8. Hiroki Nishida
  9. Sébastien Darras
(2020)
Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos
eLife 9:e59157.
https://doi.org/10.7554/eLife.59157

Share this article

https://doi.org/10.7554/eLife.59157

Further reading

    1. Developmental Biology
    2. Medicine
    Stephen E Flaherty III, Olivier Bezy ... Zhidan Wu
    Research Article

    From a forward mutagenetic screen to discover mutations associated with obesity, we identified mutations in the Spag7 gene linked to metabolic dysfunction in mice. Here, we show that SPAG7 KO mice are born smaller and develop obesity and glucose intolerance in adulthood. This obesity does not stem from hyperphagia, but a decrease in energy expenditure. The KO animals also display reduced exercise tolerance and muscle function due to impaired mitochondrial function. Furthermore, SPAG7-deficiency in developing embryos leads to intrauterine growth restriction, brought on by placental insufficiency, likely due to abnormal development of the placental junctional zone. This insufficiency leads to loss of SPAG7-deficient fetuses in utero and reduced birth weights of those that survive. We hypothesize that a ‘thrifty phenotype’ is ingrained in SPAG7 KO animals during development that leads to adult obesity. Collectively, these results indicate that SPAG7 is essential for embryonic development and energy homeostasis later in life.

    1. Developmental Biology
    2. Stem Cells and Regenerative Medicine
    Nikola Sekulovski, Jenna C Wettstein ... Kenichiro Taniguchi
    Research Article

    Amniogenesis, a process critical for continuation of healthy pregnancy, is triggered in a collection of pluripotent epiblast cells as the human embryo implants. Previous studies have established that bone morphogenetic protein (BMP) signaling is a major driver of this lineage specifying process, but the downstream BMP-dependent transcriptional networks that lead to successful amniogenesis remain to be identified. This is, in part, due to the current lack of a robust and reproducible model system that enables mechanistic investigations exclusively into amniogenesis. Here, we developed an improved model of early amnion specification, using a human pluripotent stem cell-based platform in which the activation of BMP signaling is controlled and synchronous. Uniform amniogenesis is seen within 48 hr after BMP activation, and the resulting cells share transcriptomic characteristics with amnion cells of a gastrulating human embryo. Using detailed time-course transcriptomic analyses, we established a previously uncharacterized BMP-dependent amniotic transcriptional cascade, and identified markers that represent five distinct stages of amnion fate specification; the expression of selected markers was validated in early post-implantation macaque embryos. Moreover, a cohort of factors that could potentially control specific stages of amniogenesis was identified, including the transcription factor TFAP2A. Functionally, we determined that, once amniogenesis is triggered by the BMP pathway, TFAP2A controls the progression of amniogenesis. This work presents a temporally resolved transcriptomic resource for several previously uncharacterized amniogenesis states and demonstrates a critical intermediate role for TFAP2A during amnion fate specification.