Figure 2—source data 1
Figure 2—source data 2
Figure 2—source data 3
Figure 3—source data 1
Figure 3—source data 2
Figure 3—source data 3
All data generated or analyzed during this study are included in the manuscript and supplement. Scripts and source data for all analyses and figures are provided on GitHub at https://github.com/chasewnelson/SARS-CoV-2-ORF3d (copy archived at https://archive.softwareheritage.org/swh:1:rev:469689991e7dbce2be4c4f618584304d91841c49) and Zenodo at https://zenodo.org/record/4052729. Samples SRR11713366, SRR11713367, SRR11713368, and SRR11713369 were used from the GSE149973 dataset. The EpiCoVTM database was accessed at https://www.gisaid.org/ and exact sequences used from this database (prior to filtering) are listed in Supplementary file 2.
PRIDEID PXD018760. TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINS.
PRIDEID PXD017710. Proteome and Translatome of SARS-CoV-2 infected cells.
PRIDEID PXD018581. Proteomics of SARS-CoV and SARS-CoV-2 infected cells.
NCBI Gene Expression OmnibusID GSE149973. Decoding SARS-CoV-2 coding capacity.
PRIDEID PXD019645. Data, reagents, assays and merits of proteomics for SARS-CoV-2 research and testing.
Supplementary file 1
Supplementary file 2
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