All data generated or analyzed during this study are included in the manuscript and supplement. Scripts and source data for all analyses and figures are provided on GitHub at https://github.com/chasewnelson/SARS-CoV-2-ORF3d and Zenodo at https://zenodo.org/record/4052729.
EpiFluTMGISAID's EpiFluTM Database.
TARGETED PROTEOMICS FOR THE DETECTION OF SARS-COV-2 PROTEINSPRIDE database, PXD018760.
Proteome and Translatome of SARS-CoV-2 infected cellsPRIDE database, PXD017710.
Vero cells infected with SARS CoV 2 no quantitation slices 1-10 of 20; vero cells infected with SARS CoV2 slices 11-20 of 20 slicesZenodo, 10.5281/zenodo.3722590, 10.5281/zenodo.3722596.
Proteomics of SARS-CoV and SARS-CoV-2 infected cellsPRIDE database, PXD018581.
Decoding SARS-CoV-2 coding capacityGEO database, sample IDs: SRR11713366, SRR11713367, SRR11713368, SRR11713369 from GSE149973.
Assays and Merits of Proteomics for SARS-CoV-2 Research and TestingPRIDE database, PXD019645.