POMK regulates dystroglycan function via LARGE1-mediated elongation of matriglycan

  1. Ameya S Walimbe
  2. Hidehiko Okuma
  3. Soumya Joseph
  4. Tiandi Yang
  5. Takahiro Yonekawa
  6. Jeffrey M Hord
  7. David Venzke
  8. Mary E Anderson
  9. Silvia Torelli
  10. Adnan Manzur
  11. Megan Devereaux
  12. Marco Cuellar
  13. Sally Prouty
  14. Saul Ocampo Landa
  15. Liping Yu
  16. Junyu Xiao
  17. Jack E Dixon
  18. Francesco Muntoni
  19. Kevin P Campbell  Is a corresponding author
  1. Howard Hughes Medical Institute, Senator Paul D. Wellstone Muscular Dystrophy Specialized Research Center, Department of Molecular Physiology and Biophysics and Department of Neurology, Roy J. and Lucille A. Carver College of Medicine, The University of Iowa, United States
  2. Dubowitz Neuromuscular Centre, UCL Great Ormond Street Institute of Child Health & Great Ormond Street Hospital, United Kingdom
  3. Medical Nuclear Magnetic Resonance Facility, University of Iowa Roy J. and Lucille A. Carver College of Medicine, United States
  4. The State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking-Tsinghua Center for Life Sciences, Peking University, China
  5. Department of Pharmacology, Department of Cellular and Molecular Medicine, Department of Chemistry and Biochemistry, University of California, San Diego, United States
  6. National Institute for Health Research Great Ormond Street Hospital Biomedical Research Centre, UCL Great Ormond Street Institute of Child Health, United Kingdom
8 figures, 1 table and 3 additional files

Figures

Synthesis of the α-DG Laminin-Binding Modification and Enzymes Involved.

Synthesis of the laminin-binding modification begins with the addition of the core M3 trisaccharide (GalNAc-β3-GlcNAc-β4-Man) on α-DG by the sequential actions of Protein O-Mannosyltransferase 1 and …

Figure 2 with 2 supplements
Characterization of a Patient with a Loss-of-Function Mutation in POMK.

(A) (above) Human POMK consists of a transmembrane domain (TM) and a kinase domain (N-lobe and C-lobe). The kinase domain contains the catalytic loop (orange) and activation segment (green). (below) …

Figure 2—figure supplement 1
Structural Modeling of POMK D204N Mutation.

This figure shows structural modeling of wild-type POMK and the POMK D204N mutation using human POMK protein sequence numbering, based on the crystal structure of zebrafish POMK. The green spheres …

Figure 2—figure supplement 2
Supplemental Analysis of POMK D204N Fibroblasts and Muscle.

(A) LARGE1 activity in control human fibroblasts and fibroblasts from patient NH13-284 (POMK D204N). Triple asterisks indicate statistical significance using Student’s unpaired t-test (three …

Figure 3 with 4 supplements
Mice with a Muscle-Specific Loss of Pomk Develop Hallmarks of a Mild Muscular Dystrophy.

(A) H&E and immunofluorescence analyses using IIH6 (anti-matriglycan) and an anti-β-DG antibody of quadriceps muscles of 4–6 week-old PomkLoxP/LoxP (Control) and MckCre; Pax7Cre; PomkLoxP/LoxP

Figure 3—figure supplement 1
Schematic for Generation of Floxed Alleles of Pomk.

Map of 5’ and 3’ LoxP sites (orange). LoxP sites flanking exon 5 of Pomk (large black box), which encodes the majority of the kinase domain of POMK, were inserted using CRISPR/Cas9. Cre-mediated …

Figure 3—figure supplement 2
Results of PomkLoxP/LoxP Genotyping.

(A) Genotyping strategy for floxed Pomk Allele. PCR Primers were designed to flank the 5’ LoxP site. (B) The wild-type allele of Pomk is 197 bp, while the floxed allele is 235 base pairs.

Figure 3—figure supplement 3
Muscle-Specific Pomk Knockout Mice Have Reduced Grip Strength and Body Weight.

(A, B) 2-limb grip strength of 1-month-old (A) and 4-month-old (B) PomkLoxP/LoxP (Control) and MckCre; Pax7Cre; PomkLoxP/LoxP (M-POMK KO) mice. Triple asterisks indicate statistical significance …

Figure 3—figure supplement 4
Supplemental Biochemical Analysis of Pomk-null Skeletal Muscle.

(A, B) POMK (A) and LARGE1 (B) activity of PomkLoxP/LoxP (Control) and MckCre; Pax7Cre; PomkLoxP/LoxP (M-POMK KO) quadriceps muscle extracts (three replicates). Asterisks indicate statistical …

MckCre; Pax7Cre; PomkLoxP/LoxP Extensor Digitorum Longus (EDL) Muscle Demonstrates Eccentric Contraction-Induced Force Loss.

(A) Mass (milligrams) of PomkLoxP/LoxP (Control) and MckCre; Pax7Cre; PomkLoxP/LoxP (M-POMK KO) EDL muscles tested for force production. ***Statistical significance with Student’s unpaired t-test …

Figure 5 with 2 supplements
Mice with a Muscle-Specific Loss of Pomk Express Matriglycan.

(A) Biochemical analysis of Control and M-POMK KO skeletal muscle. Glycoproteins were enriched from quadriceps skeletal muscles of mice using wheat-germ agglutinin (WGA)-agarose. Immunoblotting was …

Figure 5—figure supplement 1
Solid-Phase Binding Analyses of Pomk-null Skeletal Muscle.

(A) Solid-phase binding analysis (relative Bmax for laminin-111) of PomkLoxP/LoxP (Control), MckCre; Pax7Cre; PomkLoxP/LoxP (M-POMK KO), MckCrePomkLoxP/LoxP, and Largemyd skeletal muscle (three …

Figure 5—figure supplement 2
Pomk-null Muscle Expresses Matriglycan.

(A, B) Glycoproteins were enriched from skeletal muscles of Control, M-POMK KO, and Largemyd mice and treated in combination with α-xylosidase (Xylsa) and β-glucuronidase (Bgus). Immunoblotting was …

Figure 6 with 2 supplements
POMK D204N lacks Catalytic Activity.

(A) POMK or (B) LARGE1 activity in POMK KO HAP1 cells transduced with adenoviruses encoding POMK D204N, POMK D204A, or POMK WT. Triple asterisks: statistical significance (p-value<0.0001) compared …

Figure 6—figure supplement 1
Supplemental Biochemical Analysis of POMK D204N and POMK KO HAP1 Cells.

(A, B, C) POMK KO HAP1 cells were transduced with the indicated adenoviruses and immunoblotting was performed for: (A) POMK, (B) Core α-DG and β-DG, and (C) matriglycan (IIH6), (three replicates). (D

Figure 6—figure supplement 2
Mass spectra of O-glycans carried by a DG mucin-like domain model (DG390) expressed in POMK KO (A) or Fukutin (FKTN) KO (B) HAP1 cells.

The glycans were reductively released from the protein backbone and permethylated prior to matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) analyses. Mass spectrometry (MS) …

Figure 7 with 6 supplements
LARGE1 requires POMK to Elongate Matriglycan.

(A) WT, POMK KO, and POMK/LARGE1 KO HAP1 cells (left) or POMK/DAG1 KO HAP1 cells (right) (three replicates). (B) Solid-phase analysis of WT, POMK KO, POMK/DAG1 KO, and LARGE1 KO HAP1 cells (three …

Figure 7—figure supplement 1
Supplemental Biochemical Analysis of POMK/LARGE1 KO and POMK/DAG1 KO HAP1 Cells.

(A, B) Immunoblotting of WT, POMK KO and POMK/LARGE1 KO HAP1 cells with antibodies AF6868 (A) (Core α-DG and β-DG) or IIH6 (B). Glycoproteins were enriched using WGA-agarose as described in the …

Figure 7—figure supplement 2
Requirement for Ribitol-Phosphate in the Synthesis of the Non-Extended Form of Matriglycan.

(A, B, C) POMK KO HAP1 cells were transduced with an adenovirus encoding isoprenoid synthase domain-containing (Ad-ISPD). Immunoblotting was performed using antibodies AF6868 (A) or IIH6 (C). (B) A …

Figure 7—figure supplement 3
Fukutin Overexpression Enhances Synthesis of the Non-Extended Matriglycan.

(A, B, C) POMK KO HAP1 cells transduced with an adenovirus encoding Fukutin (FKTN), Ad-FKTN. Immunoblotting was performed using antibodies AF6868 (A) (Core α-DG and β-DG) or IIH6 (B) (three …

Figure 7—figure supplement 4
T317 is Required for Synthesis of the Non-Extended Matriglycan.

(A, B, C) Biochemical analysis of POMK/DAG1 KO HAP1 cells expressing the indicated adenoviruses (three replicates). DGE is for viral expression of α-DG that lacks the Dystroglycan N-terminal domain …

Figure 7—figure supplement 5
POMK Enables LARGE1-mediated Elongation of Matriglycan.

(A, B, C) Immunoblots of the following HAP1 cells: (A) LARGE1 KO, overexpressing Ad-LARGE1; (B, C) POMK KO, overexpressing Ad-LARGE1; (D) POMK/LARGE1 KO, overexpressing Ad-LARGE1 with or without …

Figure 7—figure supplement 6
Supplemental Characterization of POMK-null Matriglycan Synthesis.

(A, B, C) POMK KO HAP1 cells were transduced with an adenovirus encoding DG WT (Ad-DG) and immunoblotting was performed with antibodies IIH6 (A) and AF6868 (C) (three replicates). A laminin overlay …

Figure 8 with 3 supplements
NMR Analyses of POMK and LARGE1 Binding to GGM-MU and GGMp-MU.

(A, B) 1D 1H NMR spectra of the anomeric region of GGM-MU (A) and GGMp-MU (B) were acquired for the glycan concentration of 10.0 µM in the presence of various concentrations of LARGE1 as indicated. …

Figure 8—figure supplement 1
NMR Spectra of POMK Binding to GGMp-MU and Structure of GGMp-MU.

(A) 1D 1H NMR spectra of the glycan sample (10.0 µM GGMp-MU) were acquired in the presence of various concentrations of zebrafish POMK as indicated. The 13C and 1H resonances of GGMp-MU have been …

Figure 8—figure supplement 2
Model of Full-Length and Non-extended Matriglycan Synthesis.

(A) Mature matriglycan is a long polysaccharide that is synthesized by LARGE1. (B) In the absence of the core M3 phosphate added by POMK, LARGE1 generates a shorter, non-extended form of matriglycan.

Figure 8—figure supplement 3
Biochemical and Histologic Analysis of MckCre; PomkLoxP/LoxP Quadriceps Muscle.

(A, B, C) Representative biochemical analysis of glycoproteins enriched from quadriceps skeletal muscles of PomkLoxP/LoxP, MckCre; PomkLoxP/LoxP, and Largemyd mice using WGA-agarose (three …

Tables

Appendix 1—key resources table
Reagent type (species) or resourceDesignationSource or referenceIdentifiersAdditional information
Genetic reagent
Mus musculus
PomkLoxP/LoxP ICRThis paperCampbell LabMaterials and Methods ‘Generation of PomkLoxP/LoxP Mice’
Genetic reagent
Mus musculus
Pax7Cre
C57BL/6J
The Jackson Laboratory, Bar Harbor ME.JAX:010530, RRID:IMSRJAX:010530Pax7tm1(cre)Mrc
Genetic reagent
Mus musculus
MckCre
C57BL/6J
The Jackson Laboratory, Bar Harbor ME.JAX:006475, RRID:IMSR_JAX:006475B6.FVB(129S4)-Tg(Ckmm-cre)5Khn/J
Genetic reagent
Mus musculus
Largemyd
C57BL/6J
The Jackson Laboratory, Bar Harbor ME.JAX:000300, RRID:IMSR_JAX:000300MYD/Le-Os +/+ Largemyd/J myd
Antibodyanti-DG
(Sheep polyclonal)
R and D SystemsCat# AF6868,
RRID:AB_10891298
WB (1:500)
Antibodyanti-α-DG
(IIH6C4)
(Mouse monoclonal)
DSHB
Campbell Lab
Cat# IIH6 C4,
RRID:AB_2617216
WB (1:10-1:100)
Antibodyanti-myc clone 4A6
(Mouse monoclonal)
MilliporeCat# 05–724,
RRID:AB_309938
WB (1:2000)
Antibodyanti-α-DG (IIH6C4)
(Mouse monoclonal)
Millipore
Campbell Lab
Cat# 05–593,
RRID:AB_309828
IF (1:1000-1:2000)
Antibodyanti-Laminin (Rabbit polyclonal)Sigma-AldrichCat# L9393, RRID:AB_477163WB (1:1000), Solid-Phase Assay (1:5000)
Antibodyanti-β-DG
(Rabbit polyclonal)
Campbell Lab
PMID:1741056
DOI:10.1038/355696a0
AP83IF (1:50)
Antibodyanti-β-DG mouse IgM
(Mouse monoclonal)
Leica BiosystemsCat# NCL-b-DG, RRID:AB_442043IF (1:50 to 1:200)
Antibodyanti-Na+,K+ ATPase
(Mouse monoclonal)
BD BiosciencesCat# 610993
RRID:AB_398306
WB (1:1000)
Antibodyanti-sheep IgG
(Donkey polyclonal)
RocklandCat# 613-731-168, RRID:AB_220181WB (1:2000)
Antibodyanti-mouse IgG (H + L)
(Donkey polyclonal)
LI-COR BiosciencesCat# 926–32212, RRID:AB_621847WB (1:15,000), IF (1:800)
Antibodyanti-rabbit IgG (H + L)
(Donkey polyclonal)
LI-COR BiosciencesCat# 926–32213, RRID:AB_621848WB (1:15,000), IF (1:800)
Antibodyanti-mouse IgM
(Goat polyclonal)
LI-COR BiosciencesCat# 926–32280, RRID:AB_2814919WB (1:2500)
Antibodyanti-mouse IgG1
(Goat polyclonal)
LI-COR BiosciencesCat# 926–32350, RRID:AB_2782997WB (1:2000, 1:10,000)
Antibodyanti-rabbit IgG (H+L)
(Goat polyclonal)
Thermo Fisher ScientificCat# A-11034, RRID:AB_2576217IF (1:1000 to 1:2000)
Antibodyanti-mouse IgM (Goat polyclonal)Thermo Fisher ScientificCat# A-21042, RRID:AB_2535711IF (1:1000 to 1:2000)
Antibodyanti-human
FLJ23356
(Mouse monoclonal)
NovusCat# H00084197-M03, RRID:AB_2188284WB (1:500)
Commercial assay or kitCreatine Kinase (CK) Liqui-UV TestFisher Scientific/StanbioCat# 22-022-630
Cell line
(Homo-sapiens)
Parental cell line C631Horizon DiscoveryCat# C631Mycoplasma testing passed
Cell line
(Homo-sapiens)
POMK/DAG1 KOHorizon DiscoveryHZGHC001338c004, RRID:CVCL_TF19Authenticated by Sanger sequencing.
Mycoplasma testing passed.
Cell line
(Homo-sapiens)
POMK/LARGE1 KOHorizon DiscoveryHZGHC007364c011Authenticated by Sanger sequencing.
Mycoplasma testing passed.
Cell line
(Homo-sapiens)
POMK KOHorizon DiscoveryHZGHC001338c004, RRID:CVCL_TF19Authenticated by Sanger sequencing.
Mycoplasma testing passed.
Cell line
(Homo-sapiens)
POMK/ISPD KOHorizon DiscoveryHZGHC001338c001, RRID:CVCL_TF18Authenticated by Sanger sequencing.
Mycoplasma testing passed.
Cell line
(Homo-sapiens)
FKTN KOHorizon DiscoveryHZGHC000721c010, RRID:CVCL_SN68Authenticated by Sanger sequencing.
Mycoplasma testing passed.
Cell line
(Homo-sapiens)
LARGE1 KOHorizon DiscoveryHZGHC000122c007, RRID:CVCL_SV31Authenticated by Sanger sequencing.
Mycoplasma testing passed.
Cell line
(Homo-sapiens)
Primary dermal fibroblasts, humanATCCPCS-201–012
Cell line
(Homo-sapiens)
Human fibroblasts (POMK D204N)This paperNH13-284Dubowitz Neuromuscular Center, Campbell Lab
Peptide, recombinant proteinβ-GlucuronidasePMID:16303119
DOI:10.1016/j.carres.2005.10.005
Peptide, recombinant proteinα-XylosidasePMID:10801892
DOI:10.1074/jbc.M910392199
Biological sample (Homo-sapiens)Control human skeletal muscleThis paperDubowitz Neuromuscular Center, Campbell Lab
Biological sample (Homo-sapiens)Human skeletal muscleThis paper(NH13-284, POMK D204N)Dubowitz Neuromuscular Center, Campbell Lab
Chemical compound, drugPurified Danio rerio POMKPMID:27879205
DOI:10.7554/eLife.22238
Chemical compound, drugPurified mammalian dTMLARGE1PMID:22223806
DOI:10.1126/science.1214115
Chemical compound, drugGGM-MU and GGMp-MUPMID:23929950
DOI:10.1126/science.1239951
Chemical compound, drugUDP-XyloseCarboSourcehttps://www.ccrc.uga.edu/~carbosource/CSS_substrates.html
Chemical compound, drug4-Methylumbelliferyl-β-D-xylopyranosideSigma/MilliporeCat# M7008
Chemical compound, drugUDP-Glucuronic acidSigma/MilliporeCat# U6751
Chemical compound, drugUridine 5′-diphospho-N-acetylgalactosamine disodium saltSigma/MilliporeCat# U5252
Chemical compound, drugUridine 5′-diphospho-N-acetylglucosamine sodium saltSigma/MilliporeCat# U4375
Chemical compound, drug4-methylumbelliferyl α-(GlcNAc-β(1-4)Man) GM-MUSussex Researchhttps://www.sussex-research.com/
Chemical compound, drugXylose-α1,3-GlcA-β-MUSussex Researchhttps://www.sussex-research.com/
Chemical compound, drugPepstatin ASigma/MilliporeCat# 516481
Chemical compound, drugCalpain Inhibitor I (25 mg)Sigma/MilliporeCat# A6185
Chemical compound, drugAprotinin from bovine lungSigma/MilliporeCat# A1153
Chemical compound, drugLeupeptin (25 mg)Sigma/MilliporeCat# 108975
Chemical compound, drugPMSFSigma/MilliporeCat# P7626-25G
Chemical compound, drugImmobilon-FL PVDFSigma/MilliporeCat# IPFL00010
Chemical compound, drugCalpeptinFisher ScientificCat# 03-340-05125M
Chemical compound, drugBis-acrylamide solution-30% (37:1)Fisher Scientific/HoeferCat# HBGR337500X
Chemical compound, drugBenzamidine Hydrochloride HydrateMP BiochemicalsCat# 195068
Chemical compound, drugWGA agarose boundVector LabsCat# AL-1023, RRID:AB_2336862
Chemical compound, drugPrecision Plus Protein All Blue Standards-500ulBio-RadCat# 161–0373
Software, algorithmSigmaPlotSigmaPlotRRID:SCR_003210
Software, algorithmExcelMicrosoftRRID:SCR_016137
Software, algorithmGraphPad Prismhttps://www.graphpad.com/scientific-software/prism/RRID:SCR_002798Version 8.3
Software, algorithmFlowJohttps://www.flowjo.com/solutions/flowjo/downloadsRRID:SCR_008520Version 7.6.5
Software, algorithmLi-Cor Image Studio Softwarehttps://www.licor.com/bio/image-studio-lite/downloadRRID:SCR_015795
OtherStreptavidin, Alexa Fluor 594 conjugateThermo Fisher ScientificCat# S11227IF (1:1000 to 1:2000)
OtherAdenovirus:
DGC (DG, delta H30-A316)
PMID:21987822
DOI:10.1073/pnas.1114836108
OtherAdenovirus: DG T317APMID:21987822
DOI:10.1073/pnas.1114836108
OtherAdenovirus: DG T319APMID:21987822
DOI:10.1073/pnas.1114836108
OtherAdenovirus: DG T317A/319APMID:21987822
DOI:10.1073/pnas.1114836108
OtherAdenovirus: DG Wild-Type (WT)PMID:21987822
DOI:10.1073/pnas.1114836108
OtherAdenovirus:
POMK WT
PMID:27879205
DOI:10.7554/eLife.22238
OtherAdenovirus: POMK D204APMID:27879205
DOI:10.7554/eLife.22238
OtherAdenovirus: POMK D204NThis paperCampbell LabMaterials and methods ‘Adenovirus Production’
OtherAdenovirus: DG390TEVHisThis paperCampbell LabMaterials and methods ‘Adenovirus Production’
OtherAdenovirus: FukutinPMID:22522420
DOI:10.1038/ng.2252
OtherAdenovirus: Isoprenoid Synthase Domain-Containing (ISPD)PMID:22522420
DOI:10.1038/ng.2252
OtherAdenovirus: LARGE1PMID:22522420
DOI:10.1038/ng.2252
OtherNMR spectrometerBrukerAvance II 800 MHz
OtherRodent TreadmillColumbus InstrumentsExer 3/6 Treadmill
OtherWestern Blot ImagerLi-CorOdyssey CLx
OtherMouse treadmillOmnitech ElectronicsAccupacer Treadmill
OtherIsolated Mouse Muscle SystemAurora Scientific1200A
OtherMouse Grip Strength MeterColumbus Instruments1027 Mouse
OtherProminence HPLCShimadzuLC-20 system
OtherTabletop ultracentrifugeBeckman CoulterOptima max, 130K
OtherUltracentrifugeBeckman CoulterOptima-L-100 XP
OtherCentrifugeBeckman CoulterAvanti J-E HPC
OtherHPLC LC18 columnSupelco58368

Additional files

Source data 1

Raw MALDI-TOF data of DG390 expressed in FKTN KO HAP1 cells (Figure 6—figure supplement 2B).

Data were exported to the TXT format by FlexAnalysis 3.3 (Bruker Daltonics). The mass spectra in the article were zoomed into the range of m/z 750–950 to better present MS signals corresponding to core M3 glycan structures.

https://cdn.elifesciences.org/articles/61388/elife-61388-data1-v3.txt.zip
Source data 2

Raw MALDI-TOF data of DG390 expressed in POMK KO HAP1 cells (Figure 6—figure supplement 2A).

Data were exported to the TXT format by FlexAnalysis 3.3 (Bruker Daltonics). The mass spectra in the article were zoomed into the range of m/z 750–950 to better present MS signals corresponding to core M3 glycan structures.

https://cdn.elifesciences.org/articles/61388/elife-61388-data2-v3.txt.zip
Transparent reporting form
https://cdn.elifesciences.org/articles/61388/elife-61388-transrepform-v3.docx

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