Mitochondrial copper and phosphate transporter specificity was defined early in the evolution of eukaryotes

All data generated or analyzed during this study are included in the manuscript, supplemental file, and available on GenBank.

1. 1. Abrahamsen
   2. M.S.
   3. Templeton
   4. T.J.
   5. Enomoto
   6. S.
   7. Abrahante
   8. J.E.
   9. Zhu
   10. G.
   11. Lancto
   12. C.A.
   13. Deng
   14. M.
   15. Liu
   16. C.
   17. Widmer
   18. G.
   19. Tzipori
   20. S.
   21. Buck
   22. G.A.
   23. Xu
   24. P.
   25. Bankier
   26. A.T.
   27. Dear
   28. P.H.
   29. Konfortov
   30. B.A.
   31. Spriggs
   32. H.F.
   33. Iyer
   34. L.
   35. Anantharaman
   36. V.
   37. Aravind
   38. L. and Kapur
   39. V.

   (2004) ASM16534v1 - representative genome

   GCA_000165345.1.

   https://www.ncbi.nlm.nih.gov/assembly/GCF_000165345.1
2. 1. Aury
   2. J.-M.
   3. Jaillon
   4. O.
   5. Duret
   6. L.
   7. Noel
   8. B.
   9. Jubin
   10. C.
   11. Porcel
   12. B.M.
   13. Segurens
   14. B.
   15. Daubin
   16. V.
   17. Anthouard
   18. V.
   19. Aiach
   20. N.
   21. Arnaiz
   22. O.
   23. Billaut
   24. A.
   25. Beisson
   26. J.
   27. Blanc
   28. I.
   29. Bouhouche
   30. K.
   31. Camara
   32. F.
   33. Duharcourt
   34. S.
   35. Guigo
   36. R.
   37. Gogendeau
   38. D.
   39. Katinka
   40. M.
   41. Keller
   42. A.-M.
   43. Kissmehl
   44. R.
   45. Klotz
   46. C.
   47. Koll
   48. F.
   49. Le Mouel
   50. A.
   51. Lepere
   52. C.
   53. Malinsky
   54. S.
   55. Nowacki
   56. M.
   57. Nowak
   58. J.K.
   59. Plattner
   60. H.
   61. Poulain
   62. J.
   63. Ruiz
   64. F.
   65. Serrano
   66. V.
   67. Zagulski
   68. M.
   69. Dessen
   70. P.
   71. Betermier
   72. M.
   73. Weissenbach
   74. J.
   75. Scarpelli
   76. C.
   77. Schachter
   78. V.
   79. Sperling
   80. L.
   81. Meyer
   82. E.
   83. Cohen
   84. J. and Wincker
   85. P.

   (2006) ASM16542v1

   GCA_000165425.1.

   https://www.ncbi.nlm.nih.gov/assembly/GCA_000165425.1
3. 1. El-Sayed
   2. N.
   3. Caler
   4. E.
   5. Inman
   6. J.
   7. Amedeo
   8. P.
   9. Hass
   10. B.
   11. Wortman
   12. J.
   13. Gardner
   14. M.
   15. Fernandez-Robledo
   16. J.A. and Vasta
   17. G.R.

   (2008) JCVI_PMG_1.0

   GCA_000006405.1.

   https://www.ncbi.nlm.nih.gov/assembly/GCA_000006405.1
4. 1. Plasmodium falciparum Genome Sequencing Consortium

   (2016) GCA_000002765

   GCA_000002765.5.

   https://www.ncbi.nlm.nih.gov/assembly/GCA_000002765.5
5. 1. Bidwell
   2. S.
   3. Michalis
   4. H.M.
   5. Zafar
   6. N.
   7. Joardar
   8. V.
   9. Miao
   10. W.
   11. Russ
   12. C.
   13. Eisen
   14. J.
   15. Wu
   16. M.
   17. Wu
   18. D.
   19. Nierman
   20. W.
   21. Orias
   22. E.
   23. Delcher
   24. A.
   25. Salzberg
   26. S. and Coyne
   27. R.

   (2009) JCVI-TTA1-2.2

   GCA_000189635.1.

   https://www.ncbi.nlm.nih.gov/assembly/GCA_000189635.1
6. 1. Lorenzi
   2. H.
   3. Caler
   4. E.
   5. Galinsky
   6. K.
   7. Schobel
   8. S. and Paulsen
   9. I.

   (2013) TGA4

   GCA_000006565.2.

   https://www.ncbi.nlm.nih.gov/assembly/GCA_000006565.2
7. 1. Clarke
   2. M.
   3. Lohan
   4. A.J.
   5. Liu
   6. B.
   7. Lagkouvardos
   8. I.
   9. Roy
   10. S.
   11. Zafar
   12. N.
   13. Bertelli
   14. C.
   15. Schilde
   16. C.
   17. Kianianmomeni
   18. A.
   19. Burglin
   20. T.R.
   21. Frech
   22. C.
   23. Turcotte
   24. B.
   25. Kopec
   26. K.O.
   27. Synnott
   28. J.M.
   29. Choo
   30. C.
   31. Paponov
   32. I.
   33. Finkler
   34. A.
   35. Soon Heng Tan
   36. C.
   37. Hutchins
   38. A.P.
   39. Weinmeier
   40. T.
   41. Rattei
   42. T.
   43. Chu
   44. J.S.
   45. Gimenez
   46. G.
   47. Irimia
   48. M.
   49. Rigden
   50. D.J.
   51. Fitzpatrick
   52. D.A.
   53. Lorenzo-Morales
   54. J.
   55. Bateman
   56. A.
   57. Chiu
   58. C.H.
   59. Tang
   60. P.
   61. Hegemann
   62. P.
   63. Fromm
   64. H.
   65. Raoult
   66. D.
   67. Greub
   68. G.
   69. Miranda-Saavedra
   70. D.
   71. Chen
   72. N.
   73. Nash
   74. P.
   75. Ginger
   76. M.L.
   77. Horn
   78. M.
   79. Schaap
   80. P.
   81. Caler
   82. L. and Loftus
   83. B.

   (2013) Acastellanii.strNEFF v1

   GCA_000313135.1.

   https://www.ncbi.nlm.nih.gov/assembly/GCA_000313135.1
8. 1. The Dictyostelium discoideum Sequencing Consortium

   (2005) Dictyostelium discoideum AX4

   GCA_000004695.1.

   https://www.ncbi.nlm.nih.gov/assembly/GCA_000004695.1
9. 1. The Broad Institute Genome Sequencing Platform

   (2010) TheTra_May2010

   GCA_000142905.1 .

   https://www.ncbi.nlm.nih.gov/assembly/GCA_000142905.1 
10. 1. The Arabidopsis Information Resource (TAIR)

    (2018) TAIR10.1

    GCA_000001735.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000001735.2
11. 1. Merchant
    2. S.S.
    3. Prochnik
    4. S.E.
    5. Vallon
    6. O.
    7. Harris
    8. E.H.
    9. Karpowicz
    10. S.J.
    11. Witman
    12. G.B.
    13. Terry
    14. A.
    15. Salamov
    16. A.
    17. Fritz-Laylin
    18. L.K.
    19. Marechal-Drouard
    20. L.
    21. Marshall
    22. W.F.
    23. Qu
    24. L.H.
    25. Nelson
    26. D.R.
    27. Sanderfoot
    28. A.A.
    29. Spalding
    30. M.H.
    31. Kapitonov
    32. V.V.
    33. Ren
    34. Q.
    35. Ferris
    36. P.
    37. Lindquist
    38. E.
    39. Shapiro
    40. H.
    41. Lucas
    42. S.M.
    43. Grimwood
    44. J.
    45. Schmutz
    46. J.
    47. Cardol
    48. P.
    49. Cerutti
    50. H.
    51. Chanfreau
    52. G.
    53. Chen
    54. C.L.
    55. Cognat
    56. V.
    57. Croft
    58. M.T.
    59. Dent
    60. R.
    61. Dutcher
    62. S.
    63. Fernandez
    64. E.
    65. Fukuzawa
    66. H.
    67. Gonzalez-Ballester
    68. D.
    69. Gonzalez-Halphen
    70. D.
    71. Hallmann
    72. A.
    73. Hanikenne
    74. M.
    75. Hippler
    76. M.
    77. Inwood
    78. W.
    79. Jabbari
    80. K.
    81. Kalanon
    82. M.
    83. Kuras
    84. R.
    85. Lefebvre
    86. P.A.
    87. Lemaire
    88. S.D.
    89. Lobanov
    90. A.V.
    91. Lohr
    92. M.
    93. Manuell
    94. A.
    95. Meier
    96. I.
    97. Mets
    98. L.
    99. Mittag
    100. M.
    101. Mittelmeier
    102. T.
    103. Moroney
    104. J.V.
    105. Moseley
    106. J.
    107. Napoli
    108. C.
    109. Nedelcu
    110. A.M.
    111. Niyogi
    112. K.
    113. Novoselov
    114. S.V.
    115. Paulsen
    116. I.T.
    117. Pazour
    118. G.
    119. Purton
    120. S.
    121. Ral
    122. J.P.
    123. Riano-Pachon
    124. D.M.
    125. Riekhof
    126. W.
    127. Rymarquis
    128. L.
    129. Schroda
    130. M.
    131. Stern
    132. D.
    133. Umen
    134. J.
    135. Willows
    136. R.
    137. Wilson
    138. N.
    139. Zimmer
    140. S.L.
    141. Allmer
    142. J.
    143. Balk
    144. J.
    145. Bisova
    146. K.
    147. Chen
    148. C.J.
    149. Elias
    150. M.
    151. Gendler
    152. K.
    153. Hauser
    154. C.
    155. Lamb
    156. M.R.
    157. Ledford
    158. H.
    159. Long
    160. J.C.
    161. Minagawa
    162. J.
    163. Page
    164. M.D.
    165. Pan
    166. J.
    167. Pootakham
    168. W.
    169. Roje
    170. S.
    171. Rose
    172. A.
    173. Stahlberg
    174. E.
    175. Terauchi
    176. A.M.
    177. Yang
    178. P.
    179. Ball
    180. S.
    181. Bowler
    182. C.
    183. Dieckmann
    184. C.L.
    185. Gladyshev
    186. V.N.
    187. Green
    188. P.
    189. Jorgensen
    190. R.
    191. Mayfield
    192. S.
    193. Mueller-Roeber
    194. B.
    195. Rajamani
    196. S.
    197. Sayre
    198. R.T.
    199. Brokstein
    200. P.
    201. Dubchak
    202. I.
    203. Goodstein
    204. D.
    205. Hornick
    206. L.
    207. Huang
    208. Y.W.
    209. Jhaveri
    210. J.
    211. Luo
    212. Y.
    213. Martinez
    214. D.
    215. Ngau
    216. W.C.
    217. Otillar
    218. B.
    219. Poliakov
    220. A.
    221. Porter
    222. A.
    223. Szajkowski
    224. L.
    225. Werner
    226. G.
    227. Zhou
    228. K.
    229. Grigoriev
    230. I.V.
    231. Rokhsar
    232. D.S. and Grossman
    233. A.R."

    (2014) Chlamydomonas reinhardtii (green algae), v3.0

    GCA_000002595.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000002595.2
12. 1. Micromonas genome consortium

    (2009) ASM9098v2

    GCA_000090985.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000090985.2
13. 1. International Rice Genome Sequencing Project

    (2009) The IRGSP pseudomolecules (Build 4.0)

    GCF_000005425.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCF_000005425.2
14. 1. S Douglas 1
    2. S Zauner
    3. M Fraunholz
    4. M Beaton
    5. S Penny
    6. L T Deng
    7. X Wu
    8. M Reith
    9. T Cavalier-Smith
    10. U G Maier

    (2001) ASM297v1

    GCA_000002975.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000002975.1
15. 1. Alasdair C Ivens 1
    2. Christopher S Peacock
    3. Elizabeth A Worthey
    4. Lee Murphy
    5. Gautam Aggarwal
    6. Matthew Berriman
    7. Ellen Sisk
    8. Marie-Adele Rajandream
    9. Ellen Adlem
    10. Rita Aert
    11. Atashi Anupama
    12. Zina Apostolou
    13. Philip Attipoe
    14. Nathalie Bason
    15. Christopher Bauser
    16. Alfred Beck
    17. Stephen M Beverley
    18. Gabriella Bianchettin
    19. Katja Borzym
    20. Gordana Bothe
    21. Carlo V Bruschi
    22. Matt Collins
    23. Eithon Cadag
    24. Laura Ciarloni
    25. Christine Clayton
    26. Richard M R Coulson
    27. Ann Cronin
    28. Angela K Cruz
    29. Robert M Davies
    30. Javier De Gaudenzi
    31. Deborah E Dobson
    32. Andreas Duesterhoeft
    33. Gholam Fazelina
    34. Nigel Fosker
    35. Alberto Carlos Frasch
    36. Audrey Fraser
    37. Monika Fuchs
    38. Claudia Gabel
    39. Arlette Goble
    40. André Goffeau
    41. David Harris
    42. Christiane Hertz-Fowler
    43. Helmut Hilbert
    44. David Horn
    45. Yiting Huang
    46. Sven Klages
    47. Andrew Knights
    48. Michael Kube
    49. Natasha Larke
    50. Lyudmila Litvin
    51. Angela Lord
    52. Tin Louie
    53. Marco Marra
    54. David Masuy
    55. Keith Matthews
    56. Shulamit Michaeli
    57. Jeremy C Mottram
    58. Silke Müller-Auer
    59. Heather Munden
    60. Siri Nelson
    61. Halina Norbertczak
    62. Karen Oliver
    63. Susan O'neil
    64. Martin Pentony
    65. Thomas M Pohl
    66. Claire Price
    67. Bénédicte Purnelle
    68. Michael A Quail
    69. Ester Rabbinowitsch
    70. Richard Reinhardt
    71. Michael Rieger
    72. Joel Rinta
    73. Johan Robben
    74. Laura Robertson
    75. Jeronimo C Ruiz
    76. Simon Rutter
    77. David Saunders
    78. Melanie Schäfer
    79. Jacquie Schein
    80. David C Schwartz
    81. Kathy Seeger
    82. Amber Seyler
    83. Sarah Sharp
    84. Heesun Shin
    85. Dhileep Sivam
    86. Rob Squares
    87. Steve Squares
    88. Valentina Tosato
    89. Christy Vogt
    90. Guido Volckaert
    91. Rolf Wambutt
    92. Tim Warren
    93. Holger Wedler
    94. John Woodward
    95. Shiguo Zhou
    96. Wolfgang Zimmermann
    97. Deborah F Smith
    98. Jenefer M Blackwell
    99. Kenneth D Stuart
    100. Bart Barrell
    101. Peter J Myler

    (2011) ASM272v2

    GCA_000002725.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000002725.2
16. 1. "Fritz-Laylin
    2. L.K.
    3. Prochnik
    4. S.E.
    5. Ginger
    6. M.L.
    7. Dacks
    8. J.B.
    9. Carpenter
    10. M.L.
    11. Field
    12. M.C.
    13. Kuo
    14. A.
    15. Paredez
    16. A.
    17. Chapman
    18. J.
    19. Pham
    20. J.
    21. Shu
    22. S.
    23. Neupane
    24. R.
    25. Cipriano
    26. M.
    27. Mancuso
    28. J.
    29. Tu
    30. H.
    31. Salamov
    32. A.
    33. Lindquist
    34. E.
    35. Shapiro
    36. H.
    37. Lucas
    38. S.
    39. Grigoriev
    40. I.V.
    41. Cande
    42. W.Z.
    43. Fulton
    44. C.
    45. Rokhsar
    46. D.S. and Dawson
    47. S.C."

    (2010) Naegleria gruberi strain NEG-M, v1.0

    GCA_000004985.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000004985.1
17. 1. Andrew P Jackson 1
    2. Mandy Sanders
    3. Andrew Berry
    4. Jacqueline McQuillan
    5. Martin A Aslett
    6. Michael A Quail
    7. Bridget Chukualim
    8. Paul Capewell
    9. Annette MacLeod
    10. Sara E Melville
    11. Wendy Gibson
    12. J David Barry
    13. Matthew Berriman
    14. Christiane Hertz-Fowler

    (2009) ASM21029v1

    GCA_000210295.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000210295.1
18. 1. Hovde
    2. B.T.
    3. Starkenburg
    4. S.R. and Cattolico
    5. R.A.

    (2015) Ctobinv2

    GCA_001275005.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_001275005.1
19. 1. Emiliania huxleyi Annotation Consortium

    (2013) Emiliana huxleyi CCMP1516 main genome assembly v1.0

    GCA_000372725.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000372725.1
20. 1. Morrison
    2. H.G.
    3. McArthur
    4. A.G.
    5. Gillin
    6. F.D.
    7. Aley
    8. S.B.
    9. Adam
    10. R.D.
    11. Olsen
    12. G.J.
    13. Best
    14. A.A.
    15. Cande
    16. W.Z.
    17. Chen
    18. F.
    19. Cipriano
    20. M.J.
    21. Davids
    22. B.J.
    23. Dawson
    24. S.C.
    25. Elmendorf
    26. H.G.
    27. Hehl
    28. A.B.
    29. Holder
    30. M.E.
    31. Huse
    32. S.M.
    33. Kim
    34. U.U.
    35. Lasek-Nesselquist
    36. E.
    37. Manning
    38. G.
    39. Nigam
    40. A.
    41. Nixon
    42. J.E.
    43. Palm
    44. D.
    45. Passamaneck
    46. N.E.
    47. Prabhu
    48. A.
    49. Reich
    50. C.I.
    51. Reiner
    52. D.S.
    53. Samuelson
    54. J.
    55. Svard
    56. S.G. and Sogin
    57. M.L.

    (2019) UU_WB_2.1

    GCA_000002435.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000002435.2
21. 1. Xu
    2. F.
    3. Jimenez-Gonzalez
    4. A.
    5. Einarsson
    6. E.
    7. Astvaldsson
    8. A.
    9. Peirasmaki
    10. D.
    11. Eckmann
    12. L.
    13. Andersson
    14. J.O.
    15. Svard
    16. S.G. and Jerlstrom-Hultqvist
    17. J.

    (2019) UU_GM_1.1

    GCA_006247105.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_006247105.1
22. 1. Tanifuji
    2. G.
    3. Takabayashi
    4. S.
    5. Kume
    6. K.
    7. Takagi
    8. M.
    9. Nakayama
    10. T.
    11. Kamikawa
    12. R.
    13. Inagaki
    14. Y. and Hashimoto
    15. T.

    (2018) KIPB_1.0

    GCA_003568945.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_003568945.1
23. 1. Xu
    2. F.
    3. Jerlstrom-Hultqvist
    4. J.
    5. Einarsson
    6. E.
    7. Astvaldsson
    8. A.
    9. Svard
    10. S.G. and Andersson
    11. J.O.

    (2013) SSK3.0

    GCA_000497125.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000497125.1
24. 1. Treitli
    2. S.C.
    3. Kolisko
    4. M.
    5. Husnik
    6. F.
    7. Keeling
    8. P. and Hampl
    9. V.

    (2019) CUV_Sstr_1.0

    GCA_008636045.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_008636045.1
25. 1. Kuo
    2. D.

    (2018) ASM289133v1

    GCA_002891335.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_002891335.1
26. 1. Benchimol
    2. M.
    3. Almeida
    4. L.G.
    5. Vasconcelos
    6. A.T.
    7. Perreira-Neves
    8. A.
    9. Rosa
    10. I.A.
    11. Tasca
    12. T.
    13. Bogo
    14. M.R. and de Souza
    15. W.

    (2016) ASM183968v1

    GCA_001839685.1.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_001839685.1
27. 1. Srivastava
    2. M.
    3. Simakov
    4. O.
    5. Chapman
    6. J.
    7. Fahey
    8. B.
    9. Gauthier
    10. M.E.
    11. Mitros
    12. T.
    13. Richards
    14. G.S.
    15. Conaco
    16. C.
    17. Dacre
    18. M.
    19. Hellsten
    20. U.
    21. Larroux
    22. C.
    23. Putnam
    24. N.H.
    25. Stanke
    26. M.
    27. Adamska
    28. M.
    29. Darling
    30. A.
    31. Degnan
    32. S.M.
    33. Oakley
    34. T.H.
    35. Plachetzki
    36. D.C.
    37. Zhai
    38. Y.
    39. Adamski
    40. M.
    41. Calcino
    42. A.
    43. Cummins
    44. S.F.
    45. Goodstein
    46. D.M.
    47. Harris
    48. C.
    49. Jackson
    50. D.J.
    51. Leys
    52. S.P.
    53. Shu
    54. S.
    55. Woodcroft
    56. B.J.
    57. Vervoort
    58. M.
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    62. G.
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28. 1. The Broad Institute Genome Sequencing Platform

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29. 1. Genome Reference Consortium

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30. 1. The FlyBase Consortium

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31. 1. The Broad Institute Genomics Platform

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32. 1. Genome Reference Consortium

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    GCA_000001405.3.

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33. 1. King
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    4. M.J.
    5. Young
    6. S.L.
    7. Kuo
    8. A.
    9. Abedin
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    11. Chapman
    12. J.
    13. Fairclough
    14. S.
    15. Hellsten
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    18. Y.
    19. Letunic
    20. I.
    21. Marr
    22. M.
    23. Pincus
    24. D.
    25. Putnam
    26. N.
    27. Rokas
    28. A.
    29. Wright
    30. K.J.
    31. Zuzow
    32. R.
    33. Dirks
    34. W.
    35. Good
    36. M.
    37. Goodstein
    38. D.
    39. Lemons
    40. D.
    41. Li
    42. W.
    43. Lyons
    44. J.B.
    45. Morris
    46. A.
    47. Nichols
    48. S.
    49. Richter
    50. D.J.
    51. Salamov
    52. A.
    53. Sequencing
    54. J.G.
    55. Bork
    56. P.
    57. Lim
    58. W.A.
    59. Manning
    60. G.
    61. Miller
    62. W.T.
    63. McGinnis
    64. W.
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    66. H.
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    68. R.
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    70. I.V. and Rokhsar
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34. 1. Galagan
    2. J.E.
    3. Calvo
    4. S.E.
    5. Borkovich
    6. K.A.
    7. Selker
    8. E.U.
    9. Read
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    11. Jaffe
    12. D.
    13. FitzHugh
    14. W.
    15. Ma
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    17. Smirnov
    18. S.
    19. Purcell
    20. S.
    21. Rehman
    22. B.
    23. Elkins
    24. T.
    25. Engels
    26. R.
    27. Wang
    28. S.
    29. Nielsen
    30. C.B.
    31. Butler
    32. J.
    33. Endrizzi
    34. M.
    35. Qui
    36. D.
    37. Ianakiev
    38. P.
    39. Bell-Pedersen
    40. D.
    41. Nelson
    42. M.A.
    43. Werner-Washburne
    44. M.
    45. Selitrennikoff
    46. C.P.
    47. Kinsey
    48. J.A.
    49. Braun
    50. E.L.
    51. Zelter
    52. A.
    53. Schulte
    54. U.
    55. Kothe
    56. G.O.
    57. Jedd
    58. G.
    59. Mewes
    60. W.
    61. Staben
    62. C.
    63. Marcotte
    64. E.
    65. Greenberg
    66. D.
    67. Roy
    68. A.
    69. Foley
    70. K.
    71. Naylor
    72. J.
    73. Stange-Thomann
    74. N.
    75. Barrett
    76. R.
    77. Gnerre
    78. S.
    79. Kamal
    80. M.
    81. Kamvysselis
    82. M.
    83. Mauceli
    84. E.
    85. Bielke
    86. C.
    87. Rudd
    88. S.
    89. Frishman
    90. D.
    91. Krystofova
    92. S.
    93. Rasmussen
    94. C.
    95. Metzenberg
    96. R.L.
    97. Perkins
    98. D.D.
    99. Kroken
    100. S.
    101. Cogoni
    102. C.
    103. Macino
    104. G.
    105. Catcheside
    106. D.
    107. Li
    108. W.
    109. Pratt
    110. R.J.
    111. Osmani
    112. S.A.
    113. DeSouza
    114. C.P.
    115. Glass
    116. L.
    117. Orbach
    118. M.J.
    119. Berglund
    120. J.A.
    121. Voelker
    122. R.
    123. Yarden
    124. O.
    125. Plamann
    126. M.
    127. Seiler
    128. S.
    129. Dunlap
    130. J.
    131. Radford
    132. A.
    133. Aramayo
    134. R.
    135. Natvig
    136. D.O.
    137. Alex
    138. L.A.
    139. Mannhaupt
    140. G.
    141. Ebbole
    142. D.J.
    143. Freitag
    144. M.
    145. Paulsen
    146. I.
    147. Sachs
    148. M.S.
    149. Lander
    150. E.S.
    151. Nusbaum
    152. C. and Birren
    153. B.

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    GCA_000182925.2.

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35. 1. Ma
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    5. Skory
    6. C.
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    8. M.G.
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    14. M.
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    16. A.
    17. Lang
    18. B.F.
    19. Sone
    20. T.
    21. Abe
    22. A.
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    24. S.E.
    25. Corrochano
    26. L.M.
    27. Engels
    28. R.
    29. Fu
    30. J.
    31. Hansberg
    32. W.
    33. Kim
    34. J.M.
    35. Kodira
    36. C.D.
    37. Koehrsen
    38. M.J.
    39. Liu
    40. B.
    41. Miranda-Saavedra
    42. D.
    43. O'Leary
    44. S.
    45. Ortiz-Castellanos
    46. L.
    47. Poulter
    48. R.
    49. Rodriguez-Romero
    50. J.
    51. Ruiz-Herrera
    52. J.
    53. Shen
    54. Y.Q.
    55. Zeng
    56. Q.
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    58. J.
    59. Birren
    60. B.W.
    61. Cuomo
    62. C.A. and Wickes
    63. B.L.

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    GCA_000149305.1.

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36. 1. Frasergen bioinfomatics

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37. 1. The Broad Institute Genome Sequencing Platform

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38. 1. The Sea Urchin Genome Project

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39. 1. Kamper
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    3. Kahmann
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    5. Bolker
    6. M.
    7. Ma
    8. L.J.
    9. Brefort
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    11. Saville
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    13. Banuett
    14. F.
    15. Kronstad
    16. J.W.
    17. Gold
    18. S.E.
    19. Muller
    20. O.
    21. Perlin
    22. M.H.
    23. Wosten
    24. H.A.
    25. de Vries
    26. R.
    27. Ruiz-Herrera
    28. J.
    29. Reynaga-Pena
    30. C.G.
    31. Snetselaar
    32. K.
    33. McCann
    34. M.
    35. Perez-Martin
    36. J.
    37. Feldbrugge
    38. M.
    39. Basse
    40. C.W.
    41. Steinberg
    42. G.
    43. Ibeas
    44. J.I.
    45. Holloman
    46. W.
    47. Guzman
    48. P.
    49. Farman
    50. M.
    51. Stajich
    52. J.E.
    53. Sentandreu
    54. R.
    55. Gonzalez-Prieto
    56. J.M.
    57. Kennell
    58. J.C.
    59. Molina
    60. L.
    61. Schirawski
    62. J.
    63. Mendoza-Mendoza
    64. A.
    65. Greilinger
    66. D.
    67. Munch
    68. K.
    69. Rossel
    70. N.
    71. Scherer
    72. M.
    73. Vranes
    74. M.
    75. Ladendorf
    76. O.
    77. Vincon
    78. V.
    79. Fuchs
    80. U.
    81. Sandrock
    82. B.
    83. Meng
    84. S.
    85. Ho
    86. E.C.
    87. Cahill
    88. M.J.
    89. Boyce
    90. K.J.
    91. Klose
    92. J.
    93. Klosterman
    94. S.J.
    95. Deelstra
    96. H.J.
    97. Ortiz-Castellanos
    98. L.
    99. Li
    100. W.
    101. Sanchez-Alonso
    102. P.
    103. Schreier
    104. P.H.
    105. Hauser-Hahn
    106. I.
    107. Vaupel
    108. M.
    109. Koopmann
    110. E.
    111. Friedrich
    112. G.
    113. Voss
    114. H.
    115. Schluter
    116. T.
    117. Margolis
    118. J.
    119. Platt
    120. D.
    121. Swimmer
    122. C.
    123. Gnirke
    124. A.
    125. Chen
    126. F.
    127. Vysotskaia
    128. V.
    129. Mannhaupt
    130. G.
    131. Guldener
    132. U.
    133. Munsterkotter
    134. M.
    135. Haase
    136. D.
    137. Oesterheld
    138. M.
    139. Mewes
    140. H.W.
    141. Mauceli
    142. E.W.
    143. DeCaprio
    144. D.
    145. Wade
    146. C.M.
    147. Butler
    148. J.
    149. Young
    150. S.
    151. Jaffe
    152. D.B.
    153. Calvo
    154. S.
    155. Nusbaum
    156. C.
    157. Galagan
    158. J. and Birren
    159. B.W.

    (2015) Umaydis521_2.0

    GCA_000328475.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000328475.2
40. 1. Glockner
    2. G.
    3. Hulsmann
    4. N.
    5. Schleicher
    6. M.
    7. Noegel
    8. A.A.
    9. Eichinger
    10. L.
    11. Gallinger
    12. C.
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    14. J.
    15. Sierra
    16. R.
    17. Euteneuer
    18. U.
    19. Pillet
    20. L.
    21. Moustafa
    22. A.
    23. Platzer
    24. M.
    25. Groth
    26. M.
    27. Szafranski
    28. K. and Schliwa
    29. M.

    (2013) Reti_assembly1.0

    GCA_000512085.1.

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41. 1. Collen
    2. J.
    3. Porcel
    4. B.
    5. Carre
    6. W.
    7. Ball
    8. S.G.
    9. Chaparro
    10. C.
    11. Tonon
    12. T.
    13. Barbeyron
    14. T.
    15. Michel
    16. G.
    17. Noel
    18. B.
    19. Valentin
    20. K.
    21. Elias
    22. M.
    23. Artiguenave
    24. F.
    25. Arun
    26. A.
    27. Aury
    28. J.M.
    29. Barbosa-Neto
    30. J.F.
    31. Bothwell
    32. J.H.
    33. Bouget
    34. F.Y.
    35. Brillet
    36. L.
    37. Cabello-Hurtado
    38. F.
    39. Capella-Gutierrez
    40. S.
    41. Charrier
    42. B.
    43. Cladiere
    44. L.
    45. Cock
    46. J.M.
    47. Coelho
    48. S.M.
    49. Colleoni
    50. C.
    51. Czjzek
    52. M.
    53. Da Silva
    54. C.
    55. Delage
    56. L.
    57. Denoeud
    58. F.
    59. Deschamps
    60. P.
    61. Dittami
    62. S.M.
    63. Gabaldon
    64. T.
    65. Gachon
    66. C.M.
    67. Groisillier
    68. A.
    69. Herve
    70. C.
    71. Jabbari
    72. K.
    73. Katinka
    74. M.
    75. Kloareg
    76. B.
    77. Kowalczyk
    78. N.
    79. Labadie
    80. K.
    81. Leblanc
    82. C.
    83. Lopez
    84. P.J.
    85. McLachlan
    86. D.H.
    87. Meslet-Cladiere
    88. L.
    89. Moustafa
    90. A.
    91. Nehr
    92. Z.
    93. Nyvall Collen
    94. P.
    95. Panaud
    96. O.
    97. Partensky
    98. F.
    99. Poulain
    100. J.
    101. Rensing
    102. S.A.
    103. Rousvoal
    104. S.
    105. Samson
    106. G.
    107. Symeonidi
    108. A.
    109. Weissenbach
    110. J.
    111. Zambounis
    112. A.
    113. Wincker
    114. P. and Boyen
    115. C.

    (2013) ASM35022v2

    GCA_000350225.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000350225.2
42. 1. National Institute of Genetics
    2. Japan

    (2007) ASM9120v1

    GCA_000091205.1.

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43. 1. Lee
    2. J.

    (2019) P_purpureum_CCMP1328_Hybrid_assembly

    GCA_008690995.1.

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44. 1. Wincker
    2. P.

    (2010) ASM15166v1

    GCA_000151665.1.

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45. 1. Bowler
    2. C.
    3. Allen
    4. A.E.
    5. Badger
    6. J.H.
    7. Grimwood
    8. J.
    9. Jabbari
    10. K.
    11. Kuo
    12. A.
    13. Maheswari
    14. U.
    15. Martens
    16. C.
    17. Maumus
    18. F.
    19. Otillar
    20. R.P.
    21. Rayko
    22. E.
    23. Salamov
    24. A.
    25. Vandepoele
    26. K.
    27. Beszteri
    28. B.
    29. Gruber
    30. A.
    31. Heijde
    32. M.
    33. Katinka
    34. M.
    35. Mock
    36. T.
    37. Valentin
    38. K.
    39. Verret
    40. F.
    41. Berges
    42. J.A.
    43. Brownlee
    44. C.
    45. Cadoret
    46. J.P.
    47. Chiovitti
    48. A.
    49. Choi
    50. C.J.
    51. Coesel
    52. S.
    53. De Martino
    54. A.
    55. Detter
    56. J.C.
    57. Durkin
    58. C.
    59. Falciatore
    60. A.
    61. Fournet
    62. J.
    63. Haruta
    64. M.
    65. Huysman
    66. M.J.
    67. Jenkins
    68. B.D.
    69. Jiroutova
    70. K.
    71. Jorgensen
    72. R.E.
    73. Joubert
    74. Y.
    75. Kaplan
    76. A.
    77. Kroger
    78. N.
    79. Kroth
    80. P.G.
    81. La Roche
    82. J.
    83. Lindquist
    84. E.
    85. Lommer
    86. M.
    87. Martin-Jezequel
    88. V.
    89. Lopez
    90. P.J.
    91. Lucas
    92. S.
    93. Mangogna
    94. M.
    95. McGinnis
    96. K.
    97. Medlin
    98. L.K.
    99. Montsant
    100. A.
    101. Oudot-Le Secq
    102. M.P.
    103. Napoli
    104. C.
    105. Obornik
    106. M.
    107. Parker
    108. M.S.
    109. Petit
    110. J.L.
    111. Porcel
    112. B.M.
    113. Poulsen
    114. N.
    115. Robison
    116. M.
    117. Rychlewski
    118. L.
    119. Rynearson
    120. T.A.
    121. Schmutz
    122. J.
    123. Shapiro
    124. H.
    125. Siaut
    126. M.
    127. Stanley
    128. M.
    129. Sussman
    130. M.R.
    131. Taylor
    132. A.R.
    133. Vardi
    134. A.
    135. von Dassow
    136. P.
    137. Vyverman
    138. W.
    139. Willis
    140. A.
    141. Wyrwicz
    142. L.S.
    143. Rokhsar
    144. D.S.
    145. Weissenbach
    146. J.
    147. Armbrust
    148. E.V.
    149. Green
    150. B.R.
    151. Van de Peer
    152. Y. and Grigoriev
    153. I.V.

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    GCA_000150955.2.

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46. 1. Armbrust
    2. E.V.
    3. Berges
    4. J.A.
    5. Bowler
    6. C.
    7. Green
    8. B.R.
    9. Martinez
    10. D.
    11. Putnam
    12. N.H.
    13. Zhou
    14. S.
    15. Allen
    16. A.E.
    17. Apt
    18. K.E.
    19. Bechner
    20. M.
    21. Brzezinski
    22. M.A.
    23. Chaal
    24. B.K.
    25. Chiovitti
    26. A.
    27. Davis
    28. A.K.
    29. Demarest
    30. M.S.
    31. Detter
    32. J.C.
    33. Glavina
    34. T.
    35. Goodstein
    36. D.
    37. Hadi
    38. M.Z.
    39. Hellsten
    40. U.
    41. Hildebrand
    42. M.
    43. Jenkins
    44. B.D.
    45. Jurka
    46. J.
    47. Kapitonov
    48. V.V.
    49. Kroger
    50. N.
    51. Lau
    52. W.W.
    53. Lane
    54. T.W.
    55. Larimer
    56. F.W.
    57. Lippmeier
    58. J.C.
    59. Lucas
    60. S.
    61. Medina
    62. M.
    63. Montsant
    64. A.
    65. Obornik
    66. M.
    67. Parker
    68. M.S.
    69. Palenik
    70. B.
    71. Pazour
    72. G.J.
    73. Richardson
    74. P.M.
    75. Rynearson
    76. T.A.
    77. Saito
    78. M.A.
    79. Schwartz
    80. D.C.
    81. Thamatrakoln
    82. K.
    83. Valentin
    84. K.
    85. Vardi
    86. A.
    87. Wilkerson
    88. F.P. and Rokhsar
    89. D.S.

    (2009) ASM14940v2

    GCA_000149405.2.

    https://www.ncbi.nlm.nih.gov/assembly/GCA_000149405.2

Author details

1. Xinyu Zhu

   Biological Sciences, Auburn University, Auburn, United States

   Competing interests

   The authors declare that no competing interests exist.

2. Aren Boulet

   Biochemistry, Microbiology and Immunology, University of Saskatchewan, Saskatoon, Canada

   Competing interests

   The authors declare that no competing interests exist.

3. Katherine M Buckley

   Biological Sciences, Auburn University, Auburn, United States

   Competing interests

   The authors declare that no competing interests exist.

4. Casey B Phillips

   Biological Sciences, Auburn University, Auburn, United States

   Competing interests

   The authors declare that no competing interests exist.

5. Micah G Gammon

   Biological Sciences, Auburn University, Auburn, United States

   Competing interests

   The authors declare that no competing interests exist.

6. Laura E Oldfather

   Biological Sciences, Auburn University, Auburn, United States

   Competing interests

   The authors declare that no competing interests exist.

7. Stanley A Moore

   Biochemistry, Microbiology and Immunology, University Saskatchewan, Saskatoon, Canada

   Competing interests

   The authors declare that no competing interests exist.

8. Scot C Leary

   Biochemistry, Microbiology and Immunology, University of Saskatchewan, Saskatoon, Canada

   Competing interests

   The authors declare that no competing interests exist.

9. Paul A Cobine

   Biological Sciences, Auburn University, Auburn, United States

   For correspondence

   paul.cobine@auburn.edu

   Competing interests

   The authors declare that no competing interests exist.

   "This ORCID iD identifies the author of this article:" 0000-0001-6012-0985

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