Inflammation rapidly recruits mammalian GMP and MDP from bone marrow into regional lymphatics
Figures

Inflammation induces early mobilization of hematopoietic stem cells and progenitors to lymph organs in humans and mice.
(A) Content of side population (SP)cells in human lymph node (LN) by flow cytometry. LN biopsies had been blindly identified histologically as lymphadenitis, subcategorized in follicular (FL, black circles, n = 21), granulomatous (GL, green circles, N = 7), and viral (VL, pink circles, n = 5) and lymphomas, subcategorized in Hodgkin’s lymphoma (HL, blue circles, n = 12) or non-Hodgkin’s lymphoma (NHL, orange circles, n = 19). (B) Strategy for lipopolysaccharide (LPS) administration and collection of tissues (blood, kidneys, liver, spleen, bone marrow (BM), lymph node (LN), and thoracic duct (TD)) at specific times. LPS or vehicle control PBS was administered at the early rest phase into C57Bl/6 (CD45.2+) mice, and tissue specimens were collected before (zeitgeber time [ZT]4), 1 hr (ZT5), 3 hr (ZT7), 6 hr (ZT10), or 12 hr (ZT16) later. (C) Myeloid colony-forming-cell unit (CFU-C) content in peripheral blood (PB) from C57Bl/6 mice pre-treated with PBS (black circles) or LPS (blue circles) at different circadian cycle times. (D) Absolute neutrophil count in PB from C57Bl/6 mice pre-treated with PBS (black circles) or LPS (blue circles) at different circadian cycle times. (E–J) Myeloid CFU-C content in organs at different circadian cycle times. CFU-C contained in kidneys (E), liver (F), spleen (G), BM (H), LN (I), and TD (J) in response to PBS (black circles) or LPS (blue squares) at different circadian cycle times (n = 3–4 mice per time point and treatment). ZT4 = 10 am (time of LPS administration). ZT7: 1 pm (3 hr post-administration of LPS). ZT10: 4 pm (6 hr post-administration of LPS). ZT16: 10 pm (12 hr post-administration of LPS). Results are shown as mean ± SD. *p<0.05, **p<0.01.

Clonogenic and long-term multilineage potential of human and murine hematopoietic stem cells and progenitors (HSC/P) in lymph node (LN).
(A) Representative flow cytometry dot plots of side population (SP) cells from human LN biopsies diagnosed with lymphadenitis (left flow panel) and non-Hodgkin’s lymphoma (NHL, right flow panel). SP cells form a tail cluster on the left side. (B) Graph represents the percentage of SP cells in human LN biopsies categorized according to their anatomical location. Supra-diaphragmatic location (solid circles) included neck and axillary LN and infra-diaphragmatic location (open circles) included mesenteric and inguinal LN. (C) Representative colony-forming unit (CFU-C) micrographs in human LN diagnosed with follicular lymphadenitis. Scale bar: 100 µm. (D) Clonogenic potential of lymphadenitis-derived SP cells (upper left; with magnification of a CFU-GM in outlined inset) and fluorescence-activated cell sorter (FACS) analysis of LN SP-derived hematopoietic progenitors (upper right and bottom panels) maintained for 1 week in culture as previously described (Esplin et al., 2011). All SP-derived progenitors were positive for pan-leukocyte surface marker CD45 but had heterogenic expression for CD34 and CD133 surface markers. (E, F) Representative FACS profiles of murine bone marrow (BM) HSC/P in response to in vivo administration of PBS (left panels) or lipopolysaccharide (LPS) (right panels) at specified zeitgeber time (ZT). (G–N) Time response in the BM content of LSK (G), long-term HSC (LT-HSC) (H), short-term HSC (ST-HSC) (I), multipotential progenitors (MPP) (J), granulocyte-macrophage progenitors (GMPs) (K), common myeloid progenitors (CMP) (L), megakaryocyte-erythroid progenitor (MEP) (M), and LK cells (N) in response to PBS (black lines) or LPS (blue lines). Values represent mean ± SD of a minimum of four mice per group. *p<0.05, **p<0.01, ***p<0.001.

Myeloid progenitor migration to lymph node (LN) in response to lipopolysaccharide (LPS) is independent of NF-κB activation.
(A) Schema for the competitive long-term reconstitution potential of LN cells (donor cells) from C57Bl/6 (CD45.2+) mice treated with PBS/LPS and harvested at zeitgeber time (ZT)7 (3 hr) into lethally irradiated CD45.1+ B6.SJLPtprca Pep3b/BoyJ recipient mice (n = 3 mice per group). (B–E) Competitive repopulating unit (CRU) assay of LN cells as assessed by flow cytometry of allotype CD45.2-expressing cells in transplanted mice followed for up to 16 weeks. (B) Overall CRU as gated on CD45.2+ cells in response to donor cells from mice pre-treated with PBS (black line) or LPS (blue line). (C–E) Myeloid cell (C), T-cell (D), and B-cell (E) contributing CRU in response to donor cells from mice pre-treated with PBS (solid bar) or LPS (blue mosaic bar). (F) Representative example of fluorescence-activated cell sorter analysis for side population (SP) cells (upper dot plots) and SP-LSK potential (lower dot plots) from PBS- and LPS-treated LN or bone marrow (BM) tissues at ZT7 (3 hr). Hoechst: Hoechst 33342 staining for blue (blue) and red (red) fluorescence emissions. (G, H) Donor-derived chimera of sorted LN- or BM-SP cells obtained from LPS-treated mice.

Draining of bone marrow (BM)-derived lineage negative cells into lymphatics.
(A) Schema for adoptive transfer of BM-derived lineage negative cells (Lin-) labeled with 1,1'-dioctadecyl-3,3,3',3'-tetramethylindocarbocyanine perchlorate (DiI) dye into lymphatic endothelium reporter Lyve1eGFP mice. By 16 hr after cell transplantation, lipopolysaccharide (LPS) or PBS were administered into the Lyve1eGFP mice at zeitgeber time (ZT)4 (10 am; time of LPS administration). BM and lymph node (LN) cells were analyzed at ZT5.5 (11.30 am, 1.5 hr after LPS administration), ZT7 (1 pm, 3 hr after LPS administration), and ZT10 (4 pm, 6 hr after LPS administration) for labeled Lin- cells (Lin-/DiI+). (B) Frequency of Lin-/DiI+ homed to BM (solid bars) (mosaic bars) after PBS (black solid bar) or LPS (blue solid bar) administration at ZT7 (1 pm, 3 hr after LPS administration) and ZT10 (4 pm, 6 hr after LPS administration). (C) Representative 3D reconstruction images of the whole bone by two-photon microscopy showing lymphatic vessels (Lyve1) surface marker (red), nuclei with DAPI (blue), and cortical bone with second harmonic signal (SHG, light blue). The scale bars, 100 μm. (D, i–iv) Intravital two-photon microscopy imaging (IVM) of long bones from Lyve1eGFP mice showing lymphatic vessels (displayed in green) near to the surface of the bone (blue, detected by SHG signal) and homed Lin-/DiI+ cells (displayed in red). (i, iii) IVM of PBS specimen. (ii, iv) IVM of LPS specimen. (E, F) Analysis and quantification of the distance of homed Lin-/DiI+ (red) cells to Lyve1eGFP (green) cells after PBS/LPS administration at ZT5.5 (11.30 am, 1.5 hr after LPS administration) analyzed by Imaris 7.7.2 software. (G) Two-photon microscopy examples of images of longitudinal femoral sections stained with anti-Lyve1 antibody and DAPI, and analyzed for specific fluorescence signal and SHG for cortical bone. (H, I) Representative of 3D reconstitution images of PBS- and LPS-treated LN tissues (H) and cross-sections of LPS-treated LN (I) analyzed by confocal microscopy showing the location of mobilized Lin-/DiI+ cells (red; nucleus stained by DAPI in blue) in relation with Lyve1+ cells (green; nucleus stained by DAPI in blue). The Z-stack dimensions of upper panels were X = 1266.95 μm, Y = 1266.95 μm, and Z = 344 μm. Calibrate: XY = 2.47 μm and Z = 4 μm. Resolution: 512 × 512 × 86. The Z-stack dimensions of lower panels were: X = 1259.36 μm, Y = 1259.36 μm, and Z = 132 μm. Calibrate: XY = 2.46 μm and Z = 4 μm. Resolution of images was 512 × 512 × 86. (J) Absolute count of mobilized Lin-/DiI+ cells counted within LN at ZT7 (1 pm, 3 hr after LPS administration, solid bars) and ZT10 (4 pm, 6 hr after LPS administration, mosaic bars) after PBS/LPS administration. N = 4–14 LNs analyzed per time point in a minimum of three mice per group and/or time point. Graph data depict mean ± SD. *p<0.05, **p<0.01.

Lymph node (LN)-mobilized granulocyte-macrophage progenitors (GMPs) preferentially differentiate into dendritic cells.
(A) Comparative quantification of the content of bipotent and unipotent myeloid progenitors in LN at zeitgeber time (ZT)7 (1 pm, 3 hr after lipopolysaccharide (LPS) administration) after PBS/LPS administration. (B) Schema of isolation and transfer of bone marrow (BM)-derived GMP from β-actin-GFP reporter mice (CD45.2+) into C57Bl/6 (CD45.2+) mice (2 × 105 GFP+-GMP cells/mouse, n = 3 mice per group). After BM homing (17 hr), mice were treated with single and low dose of LPS (5 mg/kg) at ZT4 (day 1) and 7 days later BM and LN tissues were analyzed for green fluorescent protein (GFP) expression in myeloid populations by flow cytometry. (C, D) Graphs represent the percentage of GFP+-GMP differentiated to granulocytes (solid bars, Gr1++CD11b+CD11c-), macrophages (left mosaic bars, Gr1dimCD11b+CD11cneg), and cDC (right mosaic bars, Gr1-CD11b+ CD11c+) 7 days post-transferring after PBS/LPS administration by flow cytometry into LN (C) and BM (D). (E) Fluorescence-activated cell sorter strategy for macrophage-dendritic progenitor (MDP) content in BM and LN tissues from CX3CR-1GFP reporter mice (4–5 mice per group). Phenotypically, MDPs are defined as lineage-negative with high expression of the chemokine receptor Cx3cr1, c-fms (CD115) and Flt3 (P2), and intermediate expression of c-Kit. (F, G) Graphs show absolute numbers of MDP present in BM (F) and LN (G) 3 hr later (ZT7 [3 hr]) after PBS (black circles) or LPS (blue squares) administration. Values represent mean ± SD. *p<0.05, **p<0.01.

Lipopolysaccharide (LPS) induces rapid migration of macrophage-dendritic progenitors (MDPs) to regional lymph node (LN) chains.
(A) Flow cytometry analysis of green fluorescent protein (GFP) MDPs in bone marrow showing decreased MDPs upon LPS treatment. (B) Flow cytometry analysis of migrated GFP MDPs in LN (per regional group) showing increased GFP+MDPs in inguinal and popliteal LNs. Black bar: EGFP+; blue bar: EGFP-. Experiments were performed per triplicate. ***p<0.001.

Traf6 is a key regulator for migration of bone marrow (BM)-derived myeloid progenitors to lymph nodes (LNs) in a non-cell-autonomous manner.
(A) Schema of full chimeric mice made by non-competitive transplantation of CD45.2+ Mx1Cre;WT and Mx1Cre;Traf6flox/flox BM cells into lethally irradiated CD45.1+ B6.SJLPtprca Pep3b/BoyJ. Six weeks later Traf6 gene were deleted by intraperitoneal injection of poly(I:C). 1 week later we performed PBS/lipopolysaccharide (LPS) injection early in the rest phase (zeitgeber time [ZT]4 [10 am, time of LPS administration]) and LN-contained myeloid progenitors at ZT7 (1 pm, 3 hr after LPS administration) was scored by colony-forming unit (CFU) assay. (B) Absolute number of CFU-GM present in LN from wild-type (WT) (solid bars) and Traf6∆/∆ (orange bars) full chimeric mice (n = 6–7 mice per group) after PBS (black and orange solid bars) or LPS (blue and mosaic bars) administration. (C–H) In vitro transwell migration assay for BM-derived LK cells. (C) Experimental design for migration of WT or Traf6∆/∆ low-density (LD) BM cells (CD45.2+) toward a WT microenvironment generated by BM (CD45.1+) in the presence of LPS for 4 hr. (D) Graph represents the percentage migrated LK from WT (blue solid bar) or Traf6∆/∆ (orange mosaic bar) low-density BM (LDBM) cells to the bottom as depicted in (C). (E) Experimental design for migration of WT LDBM cells (CD45.1+) toward a gradient generated by WT or Traf6∆/∆ (CD45.2+) BM or LN cells in the presence of LPS for 4 hr. (F) Graph represents the percentage of LDBM LK migrated to the BM bottom (solid bars) or LN bottom (mosaic bars) as schemed in (E). (G) Experimental design for WT LDBM cells (CD45.1+) migration toward gradient generated by WT or Traf6∆/∆ LN-derived T-cells (CD45.2+/CD3e+/CD11b-/B220-) or B-cells (CD45.2+/CD3e-CD11b-/B220+) or myeloid cells (CD45.2+/CD3e-/CD11b+/B220-) in the presence of LPS for 4 hr. (H) Graph represents the percentage of migrated LK LDBM to the WT LN bottom (blue mosaic bars) or Traf6∆/∆ LN bottom (orange mosaic bars) as schemed in (G). In all cases, LK cell migration was determined by CD45 allotype analysis using flow cytometry in triplicate. (I) Absolute number of CFU-GM present in LN from Lyz2Cre;WT (solid bars) and Lyz2Cre;Traf6flox/flox (mosaic bars) full chimeric mice after PBS/LPS administration at ZT7 (3 hr). (J) Graph represents cumulative survival of Lyz2Cre;WT (blue line) and Lyz2Cre;Traf6flox/flox (orange line) after 10 mg/kg of LPS. (J) Survival curve after 30 mg/kg of b.w. injection in Lyz2Cre;WT (blue line) or Lyz2Cre;Traf6flox/flox (orange line). Values are shown as mean ± SD of two independent experiments with a minimum of three mice or replicates per group and experiment. *p<0.05, **p<0.01.

Myeloid progenitor migration to lymph node (LN) in response to lipopolysaccharide (LPS) is independent of NF-κB activation.
(A) Representative PCR amplifications show Traf6 deleted in circulating cells in four Mx1cre;Traf6flox/flox mice after poly(I:C) injections (10 mg/kg/2 days × five doses). (B) IFN-γ (Ifng) levels in the lower chamber at 4 hr after allowing transwell migration of wild-type (WT) bone marrow (BM) progenitors toward Wt or Traf6-deficient BM or LN cells (from Figure 4E, F). (C–H) Cytokine levels in the lower chamber at 4 hr after allowing transwell migration of LK cell progenitors contained in WT low-density BM (LDBM) toward WT or Traf6-deficient LN cells (from Figure 4E, F). (C) IL1-α (Il-1α). (D) IL-2 (Il-2). (E) IL-13 (Il-13). (F) IL-4 (Il-4). (G) TNF-α (Tnf-α). (H) IL-10 (Il-10). (I–L) Analysis of LK progenitor mitration toward BM-derived macrophages with exogenous expression of IκBα mutant resistant to proteasome degradation. BM Lin- cells were transduced with a MSCV-puro-eGFP bicistronic retroviral vector encoding full length of IκBα mutant and GFP+ protein. EGFP+ Lin- cells were sorted and differentiated in culture by macrophage colony-stimulating factor (M-CSF) cytokine to macrophages. Green fluorescent CD11b+-macrophages were layered on bottom chamber and stimulated them with LPS to generate myeloid chemotaxis gradient. (I) Experimental schema for the analysis of LK (Lin-/c-Kit+/Sca1-) cell migration contained in LDBM from the upper chamber to the transduced macrophage bottom stimulated with LPS and LPS + monensin (LPS + Mon) for 4 hr as depicted in (K). (J) Example of gating strategy for the sorting of transduced macrophages used in the bottom chamber of transwell assays. (K) Representative fluorescence-activated cell sorter dot plots demonstrating gating strategy to identify migrating granulocyte-macrophage progenitor (GMP) populations from the transwell migration assays. (L) Graph represents LK cell migration toward transduced macrophages in the presence of LPS (solid bars) or LPS + Mon (mosaic bars). Values represent mean ± SD of three mice per group and experiment. Experiments were performed per triplicate. ND: not detectable; NS: not significant. *p<0.05, ***p<0.001.

Inflammation induces temporal changes in chemokine and cytokine signatures in bone marrow (BM) and lymph node (LN).
(A) Cxcl12 in femoral or LN extracellular fluid and plasma after PBS/lipopolysaccharide (LPS) in vivo administration at zeitgeber time (ZT)7 (1 pm, 3 hr after LPS administration). (B) Heat map showing cytokine profiling release into the extracellular fluid of femora and LN in response to PBS/LPS at ZT5 (11 am, 1 hr after LPS administration) and ZT7 (1 pm, 3 hr after LPS administration). (C–N) Graphs represent levels of relevant cytokines and chemokines associated with migration/inflammatory response and released into LN extracellular fluid (black and green bars) or into femoral extracellular fluid (black and orange bars) after PBS/LPS administration into C57Bl/6 mice at ZT5 (11 am, 1 hr after LPS administration) and ZT7 (1 pm, 3 hr after LPS administration). (C–J) Extracellular LN levels of Gm-csf (C), G-csf (D), M-Csf (E), Mcp-1 (F), Ccl5 (G), eotaxin/Ccl11 (H), IL-13 (I), and IL-5 (J). (K–N) Extracellular BM levels of Ccl3 (K), Ccl4 (L), Tnfα (M), and IL-1α (N). Values are mean ± SE of two mice per treatment and experiment, pooled from two independent experiments. *p<0.05, **p<0.01, ***p<0.001; ****p<0.0001.

Granulocyte-macrophage progenitor (GMP) cells drain into local lymphatics and not blood circulation in early inflammation via Ccl19/Ccr7.
(A) Graph represents soluble Ccl19 chemokine in femoral or lymph node (LN) extracellular fluid and peripheral blood (PB) plasma after PBS (black lines) or lipopolysaccharide (LPS) (blue lines) administration at different circadian cycle times (zeitgeber time [ZT]4.5 [10.30 am, 0.5 hr after LPS administration], ZT5 [11 am, 1 hr after LPS administration], and ZT7 [1 pm, 3 hr after LPS administration]). (B) Strategy for in vivo neutralization of Ccr7 receptor or Ccl19 ligand by injections of anti-Ccr7 antibody or anti-Ccl19 antibody (50 μg/dose, two doses) into C57Bl/6 mice. One day after the last dose of antibodies, PBS or LPS was administered at ZT4 (10 am, time of LPS administration), and the myeloid progenitors-circulating cells from the LN and PB were measured by colony-forming unit (CFU) assay at ZT7 (1 pm, 3 hr after LPS administration). (C, D) Absolute number of progenitors present into LN from neutralized mice with anti-Ccl19/IgG (left graph) or anti-Ccr7/IgG2a (right graph) after PBS (black) or LPS (blue) administration as depicted in (B). (E) Generation of hematopoietic chimeric Ccl19 expressing (wild-type [WT]) or not (Ccl19-/-) mice and isolation of LNs after administration of PBS or LPS. (F) CFU content of LN from either WT or Ccl19-/- hematopoietic chimeric animals treated with PBS or LPS. (G) Experimental design to analyze L-selectin dependence of femoral GMP migration to regional (or distant) LN after LPS administration. (H, I) Percentages of GFP+ cells in LN after administration of an isotype control or anti-L-selectin antibodies. (H) Frequency of GFP +GMP cells in regional LN after administration of LPS was not modified by L-selectin blockade in vivo. (I) Inhibition of the migration of GFP+ B-lymphocytes to regional LNs in mice pre-treated with anti-L-selectin antibody. In (B) and (C), LN were collected at ZT7 or 3 hr after LPS. Values represent mean ± SD of replicates in two or three independent experiments. *p<0.05, **p<0.01, ***p<0.001.

Myeloid expression of Ccl19 ligand in lymph node (LN) and short-term differentiation of pre-treated granulocyte-macrophage progenitors (GMPs).
(A) Ccl21 in femoral or LN extracellular fluid and peripheral blood (PB) plasma after PBS (left lines) or lipopolysaccharide (LPS) (right lines) administration at different circadian cycle times. (B) Ccl19 released into the supernatant from sorted wild-type (WT) and Traf6-deficient LN T+ cells, B+ cells, and CD11b+ myeloid cells after LPS stimulation in vitro. (C–E) Experimental schema of analysis of regional migration from chimeric femora of Ccr7-expressing GMP cells to bone marrow (BM) (D) and regional (inguinal and popliteal) LN (E). (F, G) Representative example of flow cytometry analysis (F) and mean fluorescence intensity (MFI) levels (G) of Ccr7 on GMPs from wild-type (WT) and Traf6-deficient mice in the presence of PBS (black and orange solid bars) or LPS (blue solid bar and orange mosaic bar). Values represent mean ± SD of two independent experiments. **p<0.01, ***p<0.001.

In vivo analysis of Ccl19/Ccr7 axis during inflammation.
Pharmacological regulation of lipopolysaccharide (LPS)/Toll-like receptor (TLR) signaling pathway. (A) Annexin-V binding to membrane phosphatidylserine (PS) on lymph node (LN) myeloid populations from wild-type (WT) (left mosaic bars) and Traf6∆∕∆ (right mosaic bars) (n = 4 mice per group) after PBS or LPS administration. LN suspension cells were stained for myeloid surface markers including annexin-V and analyzed by flow cytometry. (B) Transwell migration of low-density bone marrow (LDBM)-derived LK cells toward gradient generated by pre-treated LN cells with dimethylsulfoxide (DMSO) (solid bars) as vehicle control and inhibitors (mosaic bars) against Irak1/4 (right lined), Ubc13 (left lined), and IKK (white squares), and following TLR signaling pathway activation by PBS (black) or LPS (blue). (C) Analysis of SNAP23 phosphorylation (Ser95) in LN myeloid cells previously treated with DMSO (solid bar) as vehicle control, Irak1/4 (right lined mosaic bar), Ubc13 (left lined mosaic bar), or IKK (white squares mosaic bar) inhibitors. Values represent two independent experiments as mean ± SD of two independent experiments performed in triplicate. (D) Mean fluorescence intensity (MFI) quantification of pre-stored Ccl19 into LN-residing CD11blow/CD11c+ cDC from non-manipulated mice by flow cytometry. Values represent mean ± SD of two or three independent experiments. p<0.05, **p<0.01, ***p<0.001.

Traf6 does not associate with changes in survival of hematopoietic cells, and progenitors and Ccl19 can be detected in a specific subpopulation of lymph node (LN) conventional dendritic cells (cDCs).
(A) Apoptosis (TUNELassay) of LK progenitors, Lin- and Lin + bone marrow (BM) cells. (B) Representative overlap histograms of phospho-SNAP23 (pSNAP23) into LN myeloid cells treated with dimethylsulfoxide (DMSO) (upper left), Irak1/4-inh (upper right), Ubc13-inh (lower left), and IKK-inh (lower right) and stimulated with PBS (red lines) or lipopolysaccharide (LPS) (blue lines). (C) Gating strategy to determine Ccl19 pre-stored into LN-residing myeloid cells basally. (D) Mean fluorescence intensity (MFI) quantification of pre-stored Ccl19 in pDC populations in basal conditions.

Peripheral blood count of myeloid progenitors at ZT7 (3 hours after PBS or LPS administration).
A. Counts in Wt vs Traf6-deficient mice. B. Counts in Wt mice treated with either an isotype control (IgG2a) or neutralizing anti-Ccr7 antibody. C. Counts in Wt mice treated with an isotype control (IgG2a) or anti-Ccl19 neutralizing antibody. No difference is statistically significant.
Videos
Representative example of multiphoton microscopy processed with Imaris software of a femur from a Lyve1eGFP mouse treated with PBS at 1 hr after administration (11 am, 1 hr after lipopolysaccharide administration).
Bone tissue is identified as second-harmonic signal (blue). Imaris software was used to measure distance between DiI-labeled cells and green fluorescent protein-positive lymphatic vessels using 3D images.
Representative example of multiphoton microscopy processed with Imaris software of a femur from a Lyve1eGFP mouse treated with LPS at 1 hr after administration (zeitgeber time 5).
Bone tissue is identified as second-harmonic signal (blue). Imaris software was used to measure distance between DiI-labeled cells and green fluorescent protein-positive lymphatic vessels using 3D images.
Representative example of transcortical lymphatics discovered by staining with anti-Lyve1 (red) in wild-type C57Bl/6 mice.
Bone tissue is identified as second-harmonic signal (blue). Green signal is autofluorescence.
Tables
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Genetic reagent (Mus musculus) | C57Bl/6 | Harlan Labs. 044 | RRID:MGI:2161078 | C57BL/6NHsd; CD45.2+ |
Genetic reagent (M. musculus) | B6.SJLPtprca Pepcb/BoyJ | Jackson Labs 002014 | RRID:MGI:109863 | CD45.1+ |
Genetic reagent (M. musculus) | Mx1-Cre | Jackson Labs 003556 | RRID:MGI:4358794 | Tg(Mx1-cre)1Cgn |
Genetic reagent (M. musculus) | Traf6flox/flox | PMID:29386112 | Provided by Dr. Daniel Starczynowski, CCHMC, Cincinnati, OH | |
Genetic reagent (M. musculus) | Lyz2Cre | PMID:10621974 | RRID:MGI:1934631 | Mature myeloid cell promoter driving Cre recombinase expression |
Genetic reagent (M. musculus) | Vav-Cre | PMID:14975238 | Provided by Dr. Andrew Roberts, WEHI, Melbourne, Australia | |
Genetic reagent (M. musculus) | Lyve1eGFP | Jackson Labs 012601 | RRID:MGI:4421655 | Lyve1tm1.1(EGFP/cre)Cys Enhanced green fluorescent protein (EGFP) in these knock-in mice is driven by the Lyve1 (lymphatic vessel endothelial hyaluronan receptor 1) promoter |
Genetic reagent (M. musculus) | β-actin-eGFP | Jackson Labs, 003291 | RRID:MGI:2686773 | B6 ATCTb-EGFP Enhanced GFP (eGFP) cDNA under the control of a chicken β-actin promoter and cytomegalovirus enhancer, have widespread eGFP fluorescence, with the exception of erythrocytes and hair |
Genetic reagent (M. musculus) | CX3CR-1GFP | Jackson Labs 005582 | RRID:MGI:J:84544 | Enhanced green fluorescent protein (EGFP) sequence replacing the first 390 bp of the coding exon (exon 2) of the chemokine (C-X3-C motif) receptor 1 (Cx3cr1) gene |
Lipopolysaccharide | LPS | Sigma-Aldrich | Cat# L2630 | Biological source is Escherichia coli (O111:B4) Purified by phenol extraction Stimulation with this generates various pro inflammatory cytokines |
Enzyme | Collagenase-II | Thermo Fisher Scientific, Gibco | Cat# 17101015 | Biological source is Clostridium histolyticum, digestion of bone, cartilage, tissues |
Enzyme | Dispase | Thermo Fisher Scientific, Gibco. | Cat# 17105041 | Biological source is Bacillus polymyxa Helpful in dissociation of primary cells from the tissues |
Lysing buffer | Pharm Lyse (red blood lysing buffer) | BD Biosciences | Cat# 555899 | Helpful in red blood cell lysis and results in good light scatter separation of lymphocytes and red blood cell debris when used in flow cytometry |
Methylcellulose media | Methocult-GF M3434 | StemCell Technology | Cat# 03434 | Semisolid medium to growth murine HPCs |
Base methylcellulose medium | Methocult-M3134 | StemCell Technology | Cat# 03134 | Incomplete medium that contains 2.6% methylcellulose in Iscove's MDM |
Cytokine | Recombinant murine GM-CSF | PeproTech | Cat# 315-03 | Biological source is E. coli Hematopoietic growth factor stimulates macrophages and neutrophils Produced in endothelial cells, fibroblasts |
Cytokine | Recombinant murine G-CSF | PeproTech | Cat# 250-05 | Biological source is E. coli Hematopoietic growth factor that stimulates the committed progenitor to neutrophils and improve the functional activities |
Cytokine | Recombinant murine M-CSF | PeproTech | Cat# 315-02 | Biological source is E. coli It facilitates the hematopoietic recovery after the bone marrow transplantation |
Cytokine | Human G-CSF | NEUPOGEN (filgrastim, Amgen) | ||
Lineage cocktail antibody | Anti-CD3e (CD3ε chain), anti-TER-119/erythroid cells (Ly-76), anti-Gr1 (Ly6G and Ly-6C), anti-CD45R (B220), anti-CD11b (integrin α chain, Mac1α) | Pharmingen, BD Biosciences | 559971 RRID:AB_10053179 | Sorting out or depleting lineage expressing cells and enriching hematopoietic progenitors in bone marrow CD3e is biotin Hamster anti-mouse, dilution 1:200, CD45R is rat anti-mouse dilution 1:200, CD11b is rat anti-mouse, Ter119 is rat anti-mouse |
Recombinant protein | Cy7-APC-Cy7-conjugated streptavidin | Pharmingen, BD Biosciences | 554063 RRID:AB_10054651 | |
Antibody | APC-conjugated anti-c-Kit | Pharmingen, BD Biosciences | 553356 RRID:AB_398536 | Clone 2B8 Rat anti-mouse specifically binds to C-kit a transmembrane tyrosine kinase receptor Dilution 1:200 |
Antibody | PECy7-conjugated anti-Sca1 | Pharmingen, BD Biosciences | 558162 RRID:AB_647253 | Clone D7 Rat anti-mouse Dilution 1:200 |
Antibody | eFluor 450-conjugated anti-CD34 | Affymetrix, eBioscience | RRID:AB_2043838 | Clone RAM34 Monoclonal antibody reacts with mouse CD34 Dilution 1:200 |
Antibody | PerCP Cy5.5-conjugated anti-Fcγ-RII/III | Pharmingen, BD Biosciences | 560540 RRID:AB_1645259 | Clone 2.4G2 It specifically recognizes a common non-polymorphic epitope on the extracellular domains of the mouse FcrγIII Rat anti-mouse Dilution 1:200 |
Antibody | FITC-conjugated anti-CD45.1 | Pharmingen, BD Biosciences | 553775 RRID:AB_395043 | Clone A20 Monoclonal antibody specifically binds to CD45.1 of all leukocytes Dilution 1:200 |
Antibody | PECy7-conjugated anti-CD45.2 | Pharmingen, BD Biosciences | 560696 RRID:AB_1727494 | Clone 104 This recognizes CD45 on all leukocytes that of most mouse strains example: C57BL6, Balb/C, etc. Mouse monoclonal Dilution 1:200 |
Antibody | APC-conjugated anti-CD11b | Pharmingen, BD Biosciences | Cat# 553312 RRID:AB_398535 | Clone M1/7 Specifically binds to CD11b or integrin alfa M Rat anti-mouse Dilution 1:200 |
Antibody | -APC-Cy7-conjugated anti-B220 (clone RA3-6B2 | Pharmingen, BD Biosciences | 552094 RRID:AB_394335 | Clone RA3-6B2 Binds to an extracellular domain of the transmembrane CD45, which is expressed in all B lymphocytes Rat anti-mouse Dilution 1:200 |
Antibody | PE-conjugated anti-CD3e | Pharmingen, BD Biosciences | 552774 RRID:AB_394460 | Clone 145-2 C11 Binds to T-cell receptor expressed CD3 complex that is expressed in thymocytes and mature T cells, etc. Hamster anti-mouse Dilution 1:200 |
Antibody | BD Horizon V450-conjugated anti-Gr1 | Pharmingen, BD Biosciences | 560454 RRID:AB_1645285 | RB6-8C5 Rat anti-mouse, clonality unknown Dilution 1:200 |
Antibody | PerCP efluor710 anti-CD115 | Thermo Fisher Scientific, eBioscience | 46-1152-82 RRID:AB10597740 | Clone AFS98 Monoclonal antibody against mouse Cd115, receptor of macrophage colony-stimulating factor Dilution 1:200 |
Antibody | R-phycoerythrin conjugated anti-CD135 | BD Biosciences | Cat# 562537 RRID:AB_2737639 | A2F10.1 This is a monoclonal antibody specifically binds to Flk2-Flt3 Dilution 1:200 |
DNA die | Hoechst 33342 | Fisher Scientific, Invitrogen | Cat# H3570 | This is a cell permeant nuclear counterstain that emits blue florescence when bound to dsDNA 10 mg/mL |
Antibody | Rabbit non-conjugated monoclonal anti-phospho-SNAP23(Ser95) | Paul A. Roche | Center for Cancer Research, National Cancer Institute, NIH | |
Fixation buffer | BD Cytofix | BD Biosciences | Cat# 554655 | For immunofluorescent staining of intracellular cytokines |
Fixation/permeabilization Kit | BD Cytofix/Cytoperm | BD Biosciences | Cat# 554714 | This provides fixation and permeabilization of the cells |
Perm/Wash buffer | BD Perm/Wash | BD Biosciences | Cat# 554723 | This is used in intracellular cytokine staining to permeabilize cells and can be used as antibody diluent |
Antibody | Secondary Alexa Fluor 488-conjugated, goat anti-rabbit | Thermo Fisher Scientific, | RRID:AB_2633280 | Used as secondary antibody Goat polyclonal Dilution 1:500 |
Software, algorithm | FlowJo xV0.7 | https://www.flowjo.com/solutions/flowjo | RRID:SCR_008520 | |
In Situ Cell Death Detection Kit | TMR red | Sigma-Aldrich, Roche | Cat# 12156792910 | This is used to detect apoptosis on a single-cell level |
Depletion kit | Lineage Cell Depletion | Miltenyi Biotech | Cat# 130-090-858 | Depletion of mature hematopoietic cells |
Plasma membrane dye | Dil stain | Thermo Fisher Scientific, Invitrogen | Cat# D3911 | This is a lipophilic membrane stain that diffuses laterally to stain the entire cell |
Detergent solution | Triton X-100 | Sigma-Aldrich | Cat# X100 | A mild detergent used to break the cell membrane |
Antibody | Anti-GFP | Abcam | Cat# ab13970 RRID:AB_300798 | Chicken polyclonal antibody Dilution 1:500 |
Antibody | Purified rat anti-mouse panendothelial cell antigen | 550563 RRID:AB_393754 | Clone Meca-32 Mouse monoclonal Dilution 1:500 | |
Antibody | Secondary antibodies goat anti-rat Alexa Fluor-488 | Thermo Fisher Scientific, Invitrogen | Cat# A-11006 RRID:AB_2534074 | Goat anti-rat Clonality unknown Dilution 1:500 |
Antibody | Secondary antibodies goat anti-chicken Alexa Fluor-568 | Thermo Fisher Scientific, Invitrogen | Cat# A-11041 RRID:AB_2534098 | Goat anti-chicken Clonality unknown Dilution 1:500 |
Software | Imaris | http://www.bitplane.com/imaris/imaris | RRID:SCR_007370 | |
Antibody | Anti-mouse CD62L | BioXcell | Cat# BE0021 RRID:AB_1107665 | This antibody reacts with L-selectin that is expressed by neutrophils, monocytes, and the majority of T- and B cells- Mouse monoclonal Dilution 1:500 |
Antibody | Anti-CD19 | BD Biosciences | Cat# 552854 RRID:AB_394495 | Rat monoclonal antibody Dilution 1:200 |
Enzyme-free cell dissociation buffer | Cell dissociation buffer | Thermo Fisher–Gibco | Cat# 13150016 | Dissociation of mammalian cells |
Recombinant human fibronectin fragment | RetroNectin | Takara | Cat# T202 | This reagent promotes co-localization of lenti or retrovirus with the target cells and promotes the transduction efficiency |
Antibody | Anti-CD169 | eBioscience | Cat# 12-5755-82 RRID:AB_2572625 | This antibody specifically binds to CD169, the receptor expressed in subset of macrophages and plays an important role in cell-cell adhesion |
Antibody | Anti-F4/80 | Thermo Fisher Scientific, eBioscience | Cat# 48-4801-82 RRID:AB_1548747 | Rat anti-mouse Dilution 1:200 |
Protease inhibitor cocktail | Complete Protease inhibitor cocktail | Sigma-Aldrich, Roche | Cat# 11697498001 | Inhibits broad spectrum of proteases |
ELISA | Mouse Ccl19/MIP-3 | R&D System | Cat# DY440 | |
ELISA | Mouse Ccl21/6Kine | R&D System | Cat# AF457 | |
Recombinant protein | Mouse anti-Ccr7 | R&D System | Cat# MAB3477 | |
Recombinant protein | Mouse anti-Ccl19 | R&D System | Cat# 440-M3 | |
Inhibitor | Ubiquitin-conjugating enzyme E2 N (UBE2N) inhibitor or Ubc13 | Sigma-Aldrich | Cat# 662107 | This inhibitor controls the biological activity of UbcH13 |
Inhibitor | IRAK1 inhibitor | Sigma-Aldrich | Cat# I5409 | |
Inhibitor | PS1145 dihydrochloride | Sigma-Aldrich | Cat# P6624 | IκB kinase inhibitor |
Inhibitor | Monensin Solution 100× | Thermo Fisher Scientific, eBioscience | Cat# 00-4505-51 | Inhibitor of intracellular transport |
Assay | TUNEL-TMR | Roche | Cat# 12156792910 | Terminal deoxynucleotidyl transferase (TdT)-mediated dUTP nick end labeling (TUNEL ) assay to detect apoptotic cells labeled with tetra-methyl-rhodamine |
Additional files
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Supplementary file 1
Histological categorization of human lymph node biopsies and their side population (%) frequency.
- https://cdn.elifesciences.org/articles/66190/elife-66190-supp1-v2.docx
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Transparent reporting form
- https://cdn.elifesciences.org/articles/66190/elife-66190-transrepform-v2.docx