(A) Diagram of Ciona robusta embryo at the late tailbud stage (embryonic stage 23). Migrating TVCs are shown in green, their non-migratory sister cells, anterior tail muscles (ATMs), in blue. The …
(A) Typical cell shapes for protrusive and retractive forces distributed within different ranges. (B) Unstable deformation of cell front resulting from focusing the protrusive force in the narrow …
Sphericity is measured using automated Bitplane Imaris function and calculated as the ratio of surface area of sphere with volume equal to that of a cell being analyzed to the actual surface area of …
(A) Micrograph at left shows a dorsal view of a leader/trailer cell pair with leader oriented to the right. Dashed lines show positions of line scans of fluorescence intensity (a.u.) taken in the …
(A) Establishment of leader/trailer polarity as measured by the asymmetry that develops between leader and trailer sphericity as cells polarize in the direction of migration. Diagram depicts dorsal …
Micrograph at the bottom right shows trunk ventral cell (TVC) pair expressing Foxf>Intβ1dn with membranes marked by Mesp>hCD4::GFP.
(A) Evolution of trunk ventral cell (TVC) polarization. Panels show in vivo-rendered images of cells at the indicated embryonic stages. Leader in blue, trailer in red, non-migratory anterior tail …
(A) Left: simulation of migration persistence over time for single cell and the centroid of the cell pair. The shaded area shows the standard error. In the model, green arrows show the direction of …
(A) Micrographs of stage 23 embryos showing the endodermal pocket formed during trunk ventral cell (TVC) migration. Embryos are oriented with anterior to the right. Endodermal cells are marked with N…
B7.5 lineage. Nuclei are marked with Mesp>H2B::GFP. Epidermal cells are marked with EphB1>hCD4::mCherry. Epidermal marker is used to orient the embryo.
B7.5 lineage. Cell membranes are marked with Mesp>hCD4::GFP. Epidermal cells are marked with EphB1>hCD4::mCherry. Epidermal marker is used to orient the embryo.
Nuclei are marked with Mesp>H2B::GFP. Epidermal cells are marked with EphB1>hCD4::mCherry. Epidermal marker is used to orient the embryo. Track traces the path of the nucleus centroid during …
Nuclei are marked with Mesp>H2B::mCherry, and cell membranes are marked with Mesp>hCD4::GFP. Epidermal cells are marked with EphB1>hCD4::mCherry. Epidermal marker is used to orient the embryo. Track …
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Software, algorithm | https://github.com/HaicenYue/3D-simulation-of-TVCs.git | |||
Genetic reagent (Ciona robusta) | Wild-caught | M-Rep, San Diego,CA | https://www.m-rep.com | |
Sequence-based reagent | RhoDFca-F | This paper | PCR primers | TGAAACTTGTATTGCGGCCGC |
Sequence-based reagent | RhoDFca-R | This paper | PCR primers | agacgtacgt GAATTCTCACAATAGC AAACAACAGCAGCAG |
Sequence-based reagent | iMyo::GFP – F | This paper | PCR primers | ACTTGTATTG CGGCCGCAACCAT GGCCGAGGTGCAGC |
Sequence-based reagent | iMyo::GFP – R | This paper | PCR Primers | gctgagcgcGAA TTCTTACTTGT ACAGCTCGTCCATGC |
Recombinant DNA reagent | pCESA: Mesp > hCD4::GFP (plasmid) | PMID:30610187 | B7.5 lineage specific GFP membrane marker | |
Recombinant DNA reagent | pCESA: Mesp > H2B::GFP (plasmid) | PMID:30610187 | B7.5 lineage specific GFP histone/nuclear marker | |
Recombinant DNA reagent | pCESA: Mesp > iMyo::GFP (plasmid) | This paper | B7.5 lineage specific GFP myosin intrabody | |
Recombinant DNA reagent | pCESA: Foxf > mCherry (plasmid) | PMID:30610187 | mCherry TVC-specific marker | |
Recombinant DNA reagent | pCESA: EfnB > hCD4::mCherry (plasmid) | PMID:30610187 | Epidermal mCherry membrane marker | |
Recombinant DNA reagent | pCESA: Mesp > 3xmKate2 (plasmid) | PMID:30610187 | B7.5 lineage specific mKate2 marker | |
Recombinant DNA reagent | pCESA: Nkx2−1> hCD4::GFP (plasmid) | PMID:30610187 | Endoderm specific GFP cell membrane marker | |
Recombinant DNA reagent | pCESA: Foxf>Sar1dn (plasmid) | PMID:25564651 | TVC-specific dominant negative Sar1 | |
Recombinant DNA reagent | pCESA: Foxf > Rhodfca (plasmid) | PMID:18535245 | TVC-specific constitutively active RhoD/F | |
Recombinant DNA reagent | pCESA: Mesp > LacZ (plasmid) | PMID:30610187 | B7.5 lineage specific LacZ loading control | |
Recombinant DNA reagent | pCESA: Foxf > Intβ1dn (plasmid) | PMID:30610187 | TVC-specific dominant negative Intβ1 | |
Recombinant DNA reagent | pCESA: Foxf > Rasca (plasmid) | PMID:18535245 | TVC-Specific constituitivley active Ras | |
Recombinant DNA reagent | pCESA: Foxf > Ddrdn (plasmid) | PMID:30610187 | TVC-specific dominant negative Ddr | |
Software, algorithm | FIJI | Schindelin et al., 2012 PMID:22743772 | RRID:SCR_002285 | |
Software, algorithm | Bitplane Imaris | Bitplane Imaris | RRID:SCR_007370 | |
Software, algorithm | Prism 9 | https://www.graphpad.com/ | RRID:SCR_002798 |
Parametername | Standard single | Supracellulardouble | Doublesame | Climbing | |||
---|---|---|---|---|---|---|---|
Used in figure | Figure 1B and C | Figures 1B, C, 2B (after polarization), Figure 3D (LT mode), Figure 3G | Figures 1E and 2B (before polarization), Figure 3D (I mode, FS mode) | Figure 2—figure supplement 1 | |||
0.1 | 0.1 | 0.1 | 0.2 | ||||
905 | 905 | 905 | 905 | ||||
0.02 | 0.02 | 0.02 | 0.06 | ||||
16 | 16 | 16 | |||||
14 | 14 | 14 | 14 | ||||
15 | 14 | 40 | |||||
160 | 180 | 160 (200 for FS mode in Figure 3D) | 180 | ||||
40 | 20 | 40 (50 for FS mode in Figure 3D) | 20 | ||||
160 | |||||||
70 | 40 (30 for FS mode in Figure 3D) | 300 | |||||
66° | 90° | 66° | 90° | ||||
90° | 90° | 90° | 90° | ||||
90° | 66° | 90° | |||||
90° | 90° | 90° | |||||
With noise | |||||||
Used in figure | Figure 4A and B | Figure 4A and B | |||||
0.005 | 0.005 | ||||||
0.1 | |||||||
0.1 | 0.1 | ||||||
With endoderm cells | |||||||
Used in figure | Figure 5D | Figure 5D | Figure 5D | ||||
Soft | Stiff | Soft | Stiff | Soft | Stiff | ||
0.05 | 0.5 | 0.05 | 0.5 | 0.05 | 0.5 | ||
1,000 | 1,000 | 1,000 | 1,000 | 1,000 | 1,000 | ||
0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | ||
0 | 0 | 0 | 0 | 0 | 0 | ||
10 | 10 | 16 | 16 | ||||
All the other s not listed above are 20.The s not listed for the ‘with noise’ and ‘with endoderm’ part are the same as the part without noise or endoderm.in the subscripts of parameter names mean ‘leader,’ ‘trailer,’ ‘endoderm,’ and ‘substrate,’ respectively.* is as listed in equations in the Materials and methods section. |
Parametername | Three cells: independent mode and leader-mid-trailer mode | Three cells: faster-slower mode |
---|---|---|
Used in figure | Figure 3E | Figure 3E |
0.1 | 0.1 | |
905 | 905 | |
0.02 | 0.02 | |
16 | 16 | |
15 | 15 | |
160 | 170 | |
40 | 45 | |
160 | 150 | |
40 | 40 | |
160 | 120 | |
40 | 30 | |
66° | 66° | |
90° | 90° | |
66° | 66° | |
90° | 90° | |
66° | 66° | |
90° | 90° | |
All the other s not listed above are 20.in the subscripts of parameter names mean ‘leader,’ ‘trailer,’ ‘middle,’ and ‘substrate,’ respectively. |