Monitoring single-cell dynamics of entry into quiescence during an unperturbed lifecycle

  1. Basile Jacquel
  2. Théo Aspert
  3. Damien Laporte
  4. Isabelle Sagot
  5. Gilles Charvin  Is a corresponding author
  1. Institute of Genetics and Molecular and Cellular Biology, France
  2. Institut de Biochimie et Génétique Cellulaires, CNRS, France
  3. Institut National de la Santé et de la Recherche Médicale, France

Abstract

The life cycle of microorganisms is associated with dynamic metabolic transitions and complex cellular responses. In yeast, how metabolic signals control the progressive choreography of structural reorganizations observed in quiescent cells during a natural life cycle remains unclear. We have developed an integrated microfluidic device to address this question, enabling continuous single-cell tracking in a batch culture experiencing unperturbed nutrient exhaustion to unravel the coordination between metabolic and structural transitions within cells. Our technique reveals an abrupt fate divergence in the population, whereby a fraction of cells is unable to transition to respiratory metabolism and undergoes a reversible entry into a quiescence-like state leading to premature cell death. Further observations reveal that non-monotonous internal pH fluctuations in respiration-competent cells orchestrate the successive waves of protein super-assemblies formation that accompany the entry into a bona fide quiescent state. This ultimately leads to an abrupt cytosolic glass transition that occurs stochastically long after proliferation cessation. This new experimental framework provides a unique way to track single-cell fate dynamics over a long timescale in a population of cells that continuously modify their ecological niche.

Data availability

The CAD file used to generate the microfluidic device is available on a github repository. The source data used to make the panels (excluding raw image files) are included for each figure. Due to size constraints representative raw image data for Figure 1 is available at Zenodo (https://doi.org/10.5281/zenodo.5592983) and the remaining raw image data, including files for Figures 2 and 3, are available on request from the corresponding author.

The following data sets were generated

Article and author information

Author details

  1. Basile Jacquel

    Institute of Genetics and Molecular and Cellular Biology, Illkirch, France
    Competing interests
    The authors declare that no competing interests exist.
  2. Théo Aspert

    Institute of Genetics and Molecular and Cellular Biology, Illkirch, France
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-2957-0683
  3. Damien Laporte

    UMR5095, Institut de Biochimie et Génétique Cellulaires, CNRS, Bordeaux, France
    Competing interests
    The authors declare that no competing interests exist.
  4. Isabelle Sagot

    UMR5095, Institut de Biochimie et Génétique Cellulaires, CNRS, BORDEAUX, France
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-2158-1783
  5. Gilles Charvin

    Department of Developmental Biology and Stem Cells, Institut National de la Santé et de la Recherche Médicale, Illkirch, France
    For correspondence
    charvin@igbmc.fr
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-6852-6952

Funding

Fondation pour la Recherche Médicale

  • Basile Jacquel

Agence Nationale de la Recherche

  • Théo Aspert

Agence Nationale de la Recherche

  • Gilles Charvin

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2021, Jacquel et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 2,282
    views
  • 343
    downloads
  • 20
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Basile Jacquel
  2. Théo Aspert
  3. Damien Laporte
  4. Isabelle Sagot
  5. Gilles Charvin
(2021)
Monitoring single-cell dynamics of entry into quiescence during an unperturbed lifecycle
eLife 10:e73186.
https://doi.org/10.7554/eLife.73186

Share this article

https://doi.org/10.7554/eLife.73186

Further reading

    1. Cell Biology
    2. Developmental Biology
    Sofía Suárez Freire, Sebastián Perez-Pandolfo ... Mariana Melani
    Research Article

    Eukaryotic cells depend on exocytosis to direct intracellularly synthesized material toward the extracellular space or the plasma membrane, so exocytosis constitutes a basic function for cellular homeostasis and communication between cells. The secretory pathway includes biogenesis of secretory granules (SGs), their maturation and fusion with the plasma membrane (exocytosis), resulting in release of SG content to the extracellular space. The larval salivary gland of Drosophila melanogaster is an excellent model for studying exocytosis. This gland synthesizes mucins that are packaged in SGs that sprout from the trans-Golgi network and then undergo a maturation process that involves homotypic fusion, condensation, and acidification. Finally, mature SGs are directed to the apical domain of the plasma membrane with which they fuse, releasing their content into the gland lumen. The exocyst is a hetero-octameric complex that participates in tethering of vesicles to the plasma membrane during constitutive exocytosis. By precise temperature-dependent gradual activation of the Gal4-UAS expression system, we have induced different levels of silencing of exocyst complex subunits, and identified three temporarily distinctive steps of the regulated exocytic pathway where the exocyst is critically required: SG biogenesis, SG maturation, and SG exocytosis. Our results shed light on previously unidentified functions of the exocyst along the exocytic pathway. We propose that the exocyst acts as a general tethering factor in various steps of this cellular process.

    1. Cell Biology
    Yue Miao, Yongtao Du ... Mei Ding
    Research Article

    The spatiotemporal transition of small GTPase Rab5 to Rab7 is crucial for early-to-late endosome maturation, yet the precise mechanism governing Rab5-to-Rab7 switching remains elusive. USP8, a ubiquitin-specific protease, plays a prominent role in the endosomal sorting of a wide range of transmembrane receptors and is a promising target in cancer therapy. Here, we identified that USP8 is recruited to Rab5-positive carriers by Rabex5, a guanine nucleotide exchange factor (GEF) for Rab5. The recruitment of USP8 dissociates Rabex5 from early endosomes (EEs) and meanwhile promotes the recruitment of the Rab7 GEF SAND-1/Mon1. In USP8-deficient cells, the level of active Rab5 is increased, while the Rab7 signal is decreased. As a result, enlarged EEs with abundant intraluminal vesicles accumulate and digestive lysosomes are rudimentary. Together, our results reveal an important and unexpected role of a deubiquitinating enzyme in endosome maturation.