(A) Top: schematic of full-length human Afadin, with domain annotation based on UniProt ID P55196, showing Ras-association (RAS, yellow), CC (green), forkhead-associated (FHA, orange), dilute (DIL, …
Uncropped, unedited blots for Figure 1B.
Uncropped, unedited blots for Figure 1C.
Uncropped, unedited blots for Figure 1D.
Uncropped, unedited gels for Figure 1E.
Uncropped, unedited gels for Figure 1F.
Top: schematic of full-length human Afadin (also known as AF6 or MLLT4), with domain annotation based on UniProt ID P55196, colored as in main Figure 1A. The predicted local distance difference test …
(A) Top: phosphopeptide antigen used to generate a sheep polyclonal anti-Afadin-pY1230 antibody (tthis study). Middle: amino acid numbers of epitope used to generate a mouse monoclonal against …
Uncropped, unedited blots for Figure 1—figure supplement 2B.
Uncropped, unedited blots for Figure 1—figure supplement 2C.
Uncropped, unedited blots for Figure 1—figure supplement 2D.
Densitometric quantification shown in Figure 1—figure supplement 2E.
Uncropped, unedited blots for Figure 1—figure supplement 2F.
Densitometric quantification shown in Figure 1—figure supplement 2G.
(A) Left: following Ni-NTA affinity chromatography, in vivo biotinylated PTPRK D1 and D2 domains were purified by size-exclusion chromatography (SEC) on an S75 16/600 column. Right: after SEC …
Uncropped, unedited gels for Figure 1—figure supplement 3A.
Uncropped, unedited blots for Figure 1—figure supplement 3B.
(A) Size-exclusion chromatography coupled to multi-angle light scattering (SEC-MALS) analysis of Afadin-CC. The SEC elution profile (normalized differential refractive index [dRI]; thin red line) …
Uncropped, unedited gels for Figure 2C.
(A) GST was removed from GST-Afadin-CC by overnight cleavage with GST-3C protease. Cleaved GST and GST-3C were removed by incubation with GSH-sepharose 4B (GSH-resin). (B) Residual cleaved GST was …
Uncropped, unedited gels for Figure 2—figure supplement 1A.
(A) Top: schematic of different GST-Afadin-CC truncations used for further interaction mapping experiments. Regions within the predicted helix are marked by a green bar. Dashed lines indicate …
Uncropped, unedited gels for Figure 3A.
Uncropped, unedited gel images for Figure 3D.
(A) Ribbon diagram of the AF2-Multimer prediction for the PTPRK-D2 domain (blue) in complex with the full Afadin-CC (aa. 1393–1455, green). Afadin-CC residues that contribute to the interaction …
Multiple-sequence alignment of the equivalent Afadin-CC region (hsAFDN aa. 1393–1455) from human (Homo sapiens), mouse (Mus musculus), dog (Canis familiaris), frog (Xenopus laevis), zebrafish (Danio …
(A) The five AF2-Multimer-generated PTPRK-D2:Afadin-CC models were superposed using the PTPRK-D2 chain only. The Afadin-CC chains of each ranked model are shown as cylinders (colored as indicated) …
(A) Conservation mapping of the PTPRK-D2:Afadin-CC interface. PTPRK-D2 is shown (blue surface representation) in complex with Afadin-CC (green ribbons). Residues that are conserved in both …
Uncropped, unedited gel for Figure 4D.
Uncropped, unedited gel for Figure 4E.
Uncropped, unedited blot for Figure 4G.
Uncropped, unedited gel images for Figure 4H.
Multiple-sequence alignment of human PTPRK, PTPRU, and PTPRM D2 domain sequences. Residues that are conserved in both PTPRK and PTPRU, but differ in PTPRM, which were used for interaction site …
(A) Ribbon diagram of PTPRK-D2 (blue) and PTPRM-D2 (wheat) in complex with Afadin-CC (green). PTPRK-F1225 stacks with hydrophobic W1418-Y1419 residues of Afadin-CC and this residue is conserved in …
Differential scanning fluorimetry of PTPRK-D2 WT (black), F1255A (red), M-loop (blue), and double mutant (DM, yellow) recombinant proteins. Curves and melting temperature (Tm) values shown represent …
(A) The 5 AF2-Multimer generated PTPRK-ICD:Afadin-CC models were superposed using the PTPRK-ICD chain only. The Afadin-CC chains of each ranked model are shown as cylinders (colored as indicated). (B…
(A) Time course of pNPP dephosphorylation by WT (black) and double mutant (DM, red) PTPRK-ICD. Error bars represent ± SEM of n = 2 independent experiments. (B) Immunoblot analysis of …
Uncropped, unedited blots for Figure 5B.
Uncropped, unedited blots for Figure 5C.
Densitometric quantification of immunoblots in Figure 5B (90 min time point shown) at indicated time points. Top: Afadin-pY1230 normalized against no protein control. Middle: p120Cat-pY228 …
Densitometric quantification of Figure 5—source data 1, shown in Figure 5—figure supplement 1.
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Gene (human) | PTPRK | ENSEMBL: ENSG00000152894 | ||
Gene (human) | AFDN | ENSEMBL: ENSG00000130396 | ||
Cell line (human) | MCF10A | ATCC | CRL-10317 | |
Cell line (human) | HEK293T | D. Ron | N/A | |
Transfected construct (human) | MCF10A PTPRK KO pooled.tGFP | Fearnley et al., 2019 | N/A | Lentivirally transduced stable cell line |
Transfected construct (human) | MCF10A PTPRK KO pooled.tGFP. P2A.PTPRK | Fearnley et al., 2019 | N/A | Lentivirally transduced stable cell line |
Transfected construct (human) | MCF10A PTPRK KO pooled.tGFP.P2A. PTPRK.C1089S | Fearnley et al., 2019 | N/A | Lentivirally transduced stable cell line |
Transfected construct (human) | MCF10A tGFP | Fearnley et al., 2019 | N/A | Lentivirally transduced stable cell line |
Antibody | Anti-PTPRK (rabbit monoclonal) | Fearnley et al., 2019 | 2.H4 | Western blot: 1:1000 |
Antibody | Anti-Afadin-pY1230 (sheep polyclonal) | This study | N/A | Characterized in Figure 1—figure supplement 2 Western blot: 1 µg/ml (with 10 µg/ml non-phosphopeptide) Available on request from Sharpe lab, Babraham Institute |
Antibody | Anti-Afadin (mouse monoclonal) | BD Transduction Laboratories | Cat#610732 | Western blot: 1:1000 |
Antibody | Anti-p120 catenin (mouse monoclonal) | BD Transduction Laboratories | Cat#610133 | Western blot: 1:1000 |
Antibody | Anti-RFP (mouse monoclonal) | Thermo Fisher Scientific | Cat#MA5-15257 | Western blot: 1:1000 |
Antibody | Anti-Turbo-GFP (mouse monoclonal) | OriGene | TA150041 | Western blot: 1:1000 |
Antibody | Anti-Afadin (rabbit monoclonal) | Cell Signaling Technology | Cat#13531 | Western blot: 1:1000 |
Antibody | Anti-His (mouse monoclonal) | Cell Signaling Technology | Cat#2366 | Western blot: 1:1000 |
Antibody | Anti-phospho-tyrosine (P-Tyr-1000) (rabbit monoclonal) | Cell Signaling Technology | Cat#8954 | Western blot: 1:2000 |
Antibody | Anti-paxillin (rabbit monoclonal) | Cell Signaling Technology | Cat#12065 (D9G12) | Western blot: 1:1000 |
Antibody | Anti-phospho-p120 catenin (Y904) (rabbit polyclonal) | Cell Signaling Technology | Cat#2910 | Western blot: 1:1000 |
Antibody | Anti-phospho-p120 catenin (Y228) (rabbit polyclonal) | Cell Signaling Technology | Cat#2911 | Western blot: 1:1000 |
Antibody | Anti-phospho- paxillin (Y118) | Cell Signaling Technology | Cat#2541 | Western blot: 1:1000 |
Antibody | Anti-Tubulin (alpha) (mouse monoclonal) | Sigma | Cat#T6199 | Western blot: 1:1000 |
Antibody | HRP-conjugated- donkey anti-goat IgG | Jackson ImmunoResearch | Cat#705-035-147 | Western blot: 1:5000 |
Antibody | HRP-conjugated- donkey anti-rabbit IgG | Jackson ImmunoResearch | Cat#711-035-152 | Western blot: 1:5000 |
Antibody | HRP-conjugated- donkey anti-mouse IgG | Jackson ImmunoResearch | Cat#711-035-152 | Western blot: 1:5000 |
Antibody | HRP-conjugated-mouse anti- rabbit IgG (conformation specific) | Cell Signaling Technology | Cat#5127S | Western blot: 1:2000 |
Recombinant DNA reagent | pET15b | J. Deane | N/A | |
Recombinant DNA reagent | pET15b.His.TEV.Avi | Fearnley et al., 2019 | N/A | |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.ICD | Fearnley et al., 2019 | UniProt: Q15262-3 | |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.ICD.D1057A | Fearnley et al., 2019 | UniProt: Q15262-3 | |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.ICD.C1089S | Fearnley et al., 2019 | UniProt: Q15262-3 | |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.D1 | Fearnley et al., 2019 | UniProt: Q15262-3 | |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.D2 | Fearnley et al., 2019 | UniProt: Q15262-3 | |
Recombinant DNA reagent | PET15b.His.TEV.Avi. PTPRK.D2.G1273H | This study | UniProt: Q15262-3 | Mutations: G1273H See Figure 4 |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.D2.L1335R | This study | UniProt: Q15262-3 | Mutations: L1335R See Figure 4D |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.ICD.DM | This study | UniProt: Q15262-3 | Mutations: G1273H L1335R See Figure 4E |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.D2.DM | This study | UniProt: Q15262-3 | Mutations: G1273H L1335R See Figure 4E |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.D2.F1225A | This study | UniProt: Q15262-3 | Mutation: F1225A See Figure 4H |
Recombinant DNA reagent | pET15b.His.TEV.Avi. PTPRK.D2.M-loop | This study | UniProt: Q15262-3 | Mutations: C1372Y E1373N E1374G See Figure 4H |
Recombinant DNA reagent | pGEX-6P-1 | J. Deane | N/A | |
Recombinant DNA reagent | pGEX-6P-Afadin-1098-C* | This study | UniProt: P55196-4 | See Figure 1E |
Recombinant DNA reagent | pGEX-6P-Afadin-1098-1507 | This study | UniProt: P55196-4 | See Figure 1E |
Recombinant DNA reagent | pGEX-6P-Afadin-1098-1407 | This study | UniProt: P55196-4 | See Figure 1 |
Recombinant DNA reagent | pGEX-6P-Afadin-1514-C* | This study | UniProt: P55196-4 | See Figure 1E |
Recombinant DNA reagent | pGEX-6P-Afadin-1393-C* | This study | UniProt: P55196-4 | See Figure 1E |
Recombinant DNA reagent | pGEX-6P-Afadin-1393-1507 | This study | UniProt: P55196-4 | See Figure 1E |
Recombinant DNA reagent | pGEX-6P-Afadin-CC | This study | UniProt: P55196-4 | Encoding amino acids: 1393–1455 See Figure 1F |
Recombinant DNA reagent | pGEX-6P-Afadin-CC-WY>AA | This study | UniProt: P55196-4 | Mutations: W1418A Y1419A See Figure 3D |
Recombinant DNA reagent | pGEX-6P-Afadin-CC-ER>AA | This study | UniProt: P55196-4 | Mutations: E1429A R1430A See Figure 3D |
Recombinant DNA reagent | pGEX-6P-Afadin-CC-RK>AA | This study | UniProt: P55196-4 | Mutations: R1432A K1433A See Figure 3D |
Recombinant DNA reagent | pGEX-6P-Afadin-CC-Q>A | This study | UniProt: P55196-4 | Mutations: Q1443A See Figure 3D |
Recombinant DNA reagent | pGEX-6P-Afadin-CC-T>A | This study | UniProt: P55196-4 | Mutations: T1446A See Figure 3D |
Recombinant DNA reagent | pGEX-6P-Afadin-CC-QT>AA | This study | UniProt: P55196-4 | Mutations: Q1443A T1446A See Figure 3D |
Recombinant DNA reagent | pmScarlet-C1 | Z. Kadlecova | N/A | |
Recombinant DNA reagent | pmScarlet-Afadin | This study | UniProt: P55196-4 | See Figure 1—figure supplement 2D |
Recombinant DNA reagent | pmScarlet-Afadin-Y1226F | This study | UniProt: P55196-4 | Mutation: Y1226F See Figure 1—figure supplement 2D |
Recombinant DNA reagent | pmScarlet-Afadin-Y1230F | This study | UniProt: P55196-4 | Mutation: Y1230F See Figure 1—figure supplement 2D |
Recombinant DNA reagent | pmScarlet-Afadin-YF YF | This study | UniProt: P55196-4 | Mutations: Y1226F Y1230F See Figure 1—figure supplement 2D |
Sequence-based reagent | ON-TARGETplus Human AFDN siRNA: | Dharmacon, GE Healthcare | L-020075-02-0005 | |
Sequence-based reagent | ON-TARGETplus Non-targeting pool siRNA: | Dharmacon, GE Healthcare | Cat#D-001810-10-05 | |
Peptide, recombinant protein | Catalase | Sigma | Cat#C134514 | |
Peptide, recombinant protein | Cholera toxin | Sigma | Cat#C-8052 | |
Peptide, recombinant protein | Insulin | Sigma | Cat#I-1882 | |
Peptide, recombinant protein | Epidermal growth factor | PeproTech | Cat#AF-100-15-1MG | |
Commercial assay or kit | Q5 High-Fidelity DNA Polymerase | New England Biolabs | Cat#M0491S | |
Commercial assay or kit | Phusion Hot Start II DNA polymerase | Thermo Fisher Scientific | Cat#F549L | |
Commercial assay or kit | EZ-ECL substrate | Geneflow | Cat#K1-0170 | |
Commercial assay or kit | InstantBlue | Expedeon | Cat#ISB1L | |
Commercial assay or kit | Phosphatase inhibitor cocktail | Roche | Cat#04906845001 | |
Commercial assay or kit | TaqMan Universal Master Mix II | Applied Biosystems | Cat#4440040 | |
Chemical compound, drug | Hydrogen peroxide | Thermo Fisher Scientific | Cat#H/1750/15 | |
Chemical compound, drug | Sodium orthovanadate | Alfa Aesar | Cat#J60191 | |
Chemical compound, drug | 250 kDa-FITC-dextran | Sigma | Cat#FD250S-100MG | |
Chemical compound, drug | Para-Nitrophenol- phosphate (pNPP) | New England Biolabs | Cat#P0757 | |
Chemical compound, drug | IPTG | Generon | Cat#GEN-S-02122 | |
Chemical compound, drug | D-biotin | Sigma | Cat#B4639 | |
Chemical compound, drug | l-Glutamine | Sigma | Cat#G7513 | |
Chemical compound, drug | Hydrocortisone | Sigma | Cat#H-0888 | |
Chemical compound, drug | NH4OH | Acros Organics | Cat#460801000 | |
Chemical compound, drug | Methanol-free 16% (w/v) paraformaldehyde (PFA) | Thermo Fisher Scientific | Cat#28906 | |
Software, algorithm | FIJI/ImageJ | Laboratory for Optical and Computational Instrumentation | University of Wisconsin-Madison | |
Software, algorithm | GraphPad | Prism | ||
Software, algorithm | Chimera | UCSF | ||
Strain, strain background (Escherichia coli) | STABLE competent E. coli | NEB | Cat#C3040I | |
Strain, strain background (E. coli) | DH5alpha competent E. coli | Invitrogen | Cat#18265017 | |
Strain, strain background (E. coli) | BL21 DE3 Rosetta E. coli | J. Deane | N/A | |
Other | DMEM | Thermo Fisher Scientific | Cat#41965-039 | Component of cell culture media |
Other | Ham's F-12 | Sigma | Cat#N4888 | Component of cell culture media |
Other | Horse serum | Thermo Fisher Scientific | Cat#16050-122 | Component of cell culture media |
Other | HRP-conjugated streptavidin | Thermo Fisher Scientific | Cat#434323 | For detection of biotinylated proteins |
Other | Fetal bovine serum | Sigma | Cat#F7524-500ml | Component of cell culture media |
Other | Trypsin-EDTA solution | Sigma | Cat#T3924 | Reagent used to lift cells from culture vessel |
Other | GeneJuice | Merck Millipore | Cat#70967-3 | Transfection reagent |
Other | EDTA-free protease inhibitors | Roche | Cat#11836170001 | Component of cell lysis buffer |
Other | Lipofectamine RNAiMAX | Invitrogen | Cat#13778075 | Transfection reagent |
Other | OptiMEM | Thermo Fisher Scientific | Cat#31985070 | Component of cell culture media |
Other | Protein G agarose beads | Merck Millipore | Cat#16-266 | Affinity reagent for immunoprecipitations |
Other | Ni-NTA agarose | QIAGEN | Cat#1018244 | Affinity reagent for His-tag purification |
Other | Streptavidin-coated magnetic beads | New England Biolabs | Cat#S1420S | Affinity reagent for Avi-tag pull-downs |
Other | Streptavidin agarose | Thermo Fisher Scientific | Cat#20357 | Affinity reagent for Avi-tag pull-downs |
Other | Superdex 200 16/600 column | GE Healthcare | Cat#28-9893-35 | Chromatography column |
Other | Superdex 75 16/600 column | GE Healthcare | Cat#28-9893-33 | Chromatography column |
Other | Ultracel-3K regenerated cellulose centrifugal filter | Merck Millipore | Cat#UFC900324 | Chromatography column |
Other | Ultracel-10K regenerated cellulose centrifugal filter | Merck Millipore | Cat#UFC901024 | Used for protein concentration |
Other | Ultracel-30K regenerated cellulose centrifugal filter | Merck Millipore | Cat#UFC903024 | Used for protein concentration |
Other | NuPAGE 4–12% Bis-Tris gel | Thermo Fisher Scientific | Cat#NP0321BOX | SDS PAGE electrophoresis gel |
Other | Slide-A-Lyzer 20K MWCO | Thermo Fisher Scientific | Cat#66003 | Dialysis cassette |
Other | SYPRO Orange dye | Thermo Fisher Scientific | Cat#S6650 | Used for thermal shift assays |
Other | MycoAlert PLUS Mycoplasma Detection Kit | Lonza | #LT07-705 | Used for testing cell lines |
Other | MycoProbe Mycoplasma Detection Kit | R&D Systems | #CUL001B | Used for testing cell lines |