Improved ANAP incorporation and VCF analysis reveal details of P2X7 current facilitation and a limited conformational interplay between ATP binding and the intracellular ballast domain

  1. Anna Durner
  2. Ellis Durner
  3. Annette Nicke  Is a corresponding author
  1. Walther Straub Institute of Pharmacology and Toxicology, Faculty of Medicine, LMU Munich, Germany
  2. Lehrstuhl für Angewandte Physik and Center for Nanoscience, LMU Munich, Germany
6 figures, 3 tables and 1 additional file

Figures

Figure 1 with 1 supplement
Optimization of fluorescent unnatural amino acid (fUAA) incorporation into Xenopus laevis oocyte-expressed P2X1 receptor.

(A) Molecular structure of L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP) and schematic representation of the 2-step injection method for site-specific ANAP incorporation using the amber stop-codon (UAG) and a plasmid containing the orthogonal tRNA/tRNA-synthetase pair. (B) Representative SDS-PAGE analysis of plasma membrane-expressed ANAP-labeled (S10* or S388*) rat P2X1Rs (46 kDa without glycosylation). A C-terminal EGFP-tag (27 kDa) was added as indicated to enable detection of premature termination at position 388. Oocytes were injected as shown in A and labeled with membrane impermeable Cy5-NHS ester. His-tagged P2X1Rs were extracted in 0.5% n-dodecyl-β-D-maltoside, purified via Ni2+-NTA agarose, and separated by SDS-PAGE (8%). Noninjected oocytes and oocytes injected only with the plasmid pANAP, P2X1 cRNA without the amber stop codon (Wt), or without ANAP (as indicated) served as controls. Note, that twice the amount of protein was loaded for P2X1(S10*). Ø indicates empty lanes. Two to three independent experiments were performed. (C) Representation of the 1-step injection method and all components required for UAA-labeling plus optional X. laevis eRF1(E55D) cRNA (left) and (right) scheme of protein translation termination by eRF1 (upper panel) and how overexpression of the mutated form of eRF1 favors amber-encoded fUAA incorporation by outcompeting endogenous eRF1 (lower panel). (D) Comparison of Cy5-labeled membrane-expressed full-length and truncated His-rP2X1-EGFP(388*) ratios upon expression by the 2-step and 1-step injection method with or without eRF1(E55D) co-expression. A representative SDS-PAGE gel (prepared as in B) and statistical analysis of data from 6 to 11 experiments including oocytes from 4 to 6 different X. laevis frogs per group are shown. Data are represented as mean ± S.D., and significance was determined by a two-tailed unpaired Welch’s t-test and is indicated as *p<0.05 and ****p<0.0001.

Figure 1—figure supplement 1
Variation of experimental conditions to optimize L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP) incorporation into oocyte-expressed ion channels.

(A) Comparison of ANAP-trifluoroacetic salt (TFA, a and b indicate two different batches) and membrane-permeable ANAP methyl ester (OMe) and application forms (injection and/or incubation in 2 mM solution). In the last two lanes, a twofold higher concentration (500 mM) was used for injection. Lanes shown in the same figure are from the same gel but rearranged for clarity. (B) Left: Comparison of ANAP-OMe application forms (injection and incubation as above) and effect of co-injected X. laevis eRF1(E55D) (as purified protein or as cRNA, as indicated) for the 1-step and the 2-step injection method. Right: Effect of different injection intervals. tRNA synthetase was expressed first, either from the pANAP plasmid (injected into the nucleus) or from the in vitro synthesized cRNA (injected into the cytoplasm) as indicated. All other components were then injected into the cytoplasm after the shown intervals. Note that the gel was rearranged for clearer presentation and that lanes marked with a hashtag are shown twice. (C) The optimized 1-step injection protocol with and without co-injection of eRF1(E55D) applied to hα1 GlyR(A52*) and P2X1(S388*)-EGFP.

Figure 2 with 1 supplement
P2X7Rs containing L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP) at various positions within the extracellular, transmembrane, and cytoplasmic regions are expressed in the plasma membrane and functional.

(A, B) Surface representations of the rat P2X7 Cryo-EM structure in the open state (PDB ID: 6u9w). The different domains (A) and selected sites of ANAP substitutions (B) are indicated in one subunit while the two other subunits are shown in gray and wheat, respectively. (C) Evaluation of surface expression and functionality of P2X7Rs generated from constructs containing an amber stop codon in the indicated positions. X. laevis oocytes expressing the constructs were labeled with membrane-impermeant Cy5-NHS ester. His-tagged P2X7Rs were extracted in 0.5% n-dodecyl-β-D-maltoside, purified via Ni2+ NTA agarose, and analyzed by SDS-PAGE (8%). Symbols indicate current responses to 0.3 mM ATP as determined by two-electrode voltage clamp recordings in the voltage clamp fluorometry setup: +, functional and currents comparable to wt P2X7 after 2–4 days of expression; (+), functional and currents comparable to wt P2X7 after 5–7 days of expression; –, not functional or currents ≤0.5 μA and not reproducible after 4 days. Representative data from two to five independent biochemical experiments are shown.

Figure 2—figure supplement 1
Comparative analysis of tetramethyl-rhodamine-maleimide (TMRM)-labeled and L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP)-labeled P2X7 head domain mutants.

(A) To estimate plasma membrane expression (upper gel) and accessibility of introduced cysteine residues (lower gel), intact oocytes expressing the indicated cysteine-substituted P2X7R mutants were either labeled with the membrane-impermeant amino-reactive Cy5-NHS ester or with TMRM. Purified His-tagged protein was visualized by fluorescence scanning. Below: Box plot summarizing results from TMRM-labeled oocytes expressing indicated P2X7R mutants with ΔF/F% representing the maximum fluorescence signal during a 15-s ATP application (300 μM). Numbers of recordings are given in brackets and a representative voltage clamp fluorometry (VCF)-recording (-60 mV) of a TMRM-labeled oocyte expressing P2X7(S124C) is shown. (B) Summary of fluorescence (violet and blue) changes of oocytes expressing P2X7Rs containing ANAP in the indicated positions within the head domain and a representative VCF-recording (at –30 mV) from an oocyte expressing P2X7 with ANAP in position 124 (P2X7(S124*)). Note that in case of mutants P120*, E121*, and P123* less than three recordings fulfilled the inclusion criteria described in Material and methods. Original recordings have also been deposited with Dryad and summarized and assigned in Table 1—source data 1.

Figure 3 with 3 supplements
Characterization of ATP-induced fluorescence changes in the P2X7 head domain recorded at different wavelengths.

(A) Schematic of the voltage clamp fluorometry (VCF)-recording system and summary of filter/dichroic mirror configurations used to detect distinct spectral parts of L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP)-fluorescence (sets 1 and 2) and ANAP in combination with tetramethyl-rhodamine-maleimide (TMRM) or R-GECO1.2 (set 3). The corresponding positions A, B, C, and D are shown in the schematic. A second LED (green) was used for additional excitation of TMRM or R-GECO1.2. (B) Close-up of the P2X7 head domain in surface representation indicating the ANAP-substituted amino acid residues P120-Q128 (red). The three subunits are colored in gray, wheat, and light blue. (C) Principle of VCF and representative VCF recordings in response to 0.3 mM ATP (upon second application). Change of fluorescence intensity of a site-specifically introduced environment-sensitive fluorophore can be induced by ligand binding and/or conformational changes. (D) Box plots summarizing results from the indicated ANAP-labeled P2X7Rs at two different emission wavelengths with ΔF/F% representing the maximum fluorescence signal during a 15-s ATP application. Numbers of recordings are given in brackets. (E) Representative VCF recordings in response to 0.3 mM ATP of P2X7(S124*) at three different emission wavelengths and summary of most likely interpretations. Note that fluorescence changes are most likely resulting from multiple effects, and only the dominant effect is stated. Arrows indicate direction of fluorescent changes. (F) Overlay of VCF recordings upon first (colored) and second (gray) ATP applications (0.3 mM) at two different emission wavelengths for P2X7(S124*) (14 oocytes) and P2X7(K127*) (17 oocytes), respectively. Averaged VCF recordings are shown as lines, and standard deviations are plotted as envelopes. Baseline currents (15 s before ATP application) were adjusted for clarity. All recordings were performed in divalent-free buffer, and oocytes were clamped at –30 mV. Original recordings have also been deposited with Dryad and summarized and assigned in Table 1—source data 1.

Figure 3—figure supplement 1
Control voltage clamp fluorometry (VCF) recordings from oocytes expressing different non-mutated ion channels.

Representative VCF-recordings of oocytes injected with cRNA encoding the indicated receptors plus either water (negative control) or L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP)-Master Mix (ANAP-MM, containing ANAP, tRNA, cRNA ecoding tRNA-syntethase, and cRNA encoding eRF1(E55D)). The holding potential was –30 mV, if not otherwise indicated.

Figure 3—figure supplement 2
Control experiments to test the specificity of tRNA-loading and L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP) incorporation into P2X7.

(A,B) Representative voltage clamp fluorometry (VCF) recordings (A) and analysis of membrane expression (B) from oocytes that were injected with cRNA encoding non-mutated P2X7 or P2X7 containing an amber stop codon at the indicated positions together with (a) both, ANAP and a master mix containing tRNA-synthetase cRNA, tRNA, and eRF1(E55D) cRNA (positive control), (b) with the master mix only, (c) with ANAP only, or (d) with water as a negative control. ANAP emission was recorded at two different wavelengths (purple: 430–490 nm, green: >500 nm). VCF recordings showed clear ATP-evoked signals only for the oocytes injected with all essential components necessary for ANAP-incorporation and were in agreement with surface-expression analysis experiments. Although faint surface expression of full-length receptors was seen in the absence of ANAP (indicating limited read through), ATP-evoked fluorescence and current responses were negligible (no fluorescence change and current responses less than 10% of those from positive controls).

Figure 3—figure supplement 3
Deletion of the cysteine-rich region eliminates current facilitation, and F11* and S124* mutants track current facilitation.

(A) Overlay of representative current traces upon first (black) and second (gray) ATP applications (0.3 mM in 195 s interval) for wt P2X7, and the indicated mutations that were expected to prevent facilitation. Baseline currents (15 s before ATP application) were adjusted for clarity. (B) Box plot summarizing 10–50% rise times of the first and second current responses to ATP for wt and ΔCys P2X7. Note that the low expression of the S23N and Cys-Ala mutants prevented further analysis. (C) Box plots summarizing 10–50% rise times of the first and second current (black) and fluorescence (colored) responses at the indicated emission wavelengths for F11*, S124*, K127*, and the tetramethyl-rhodamine-maleimide-labeled double mutant (F11*, S124C). Significance was determined using the two-tailed paired Student’s t-test (*, p<0.05; **, p<0.005; ***, p<0.0005; ****, p<0.00005; ns, not significant). (D) Normalized dose-response curves for ATP at wt P2X7 and the indicated L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid-containing receptors. Lines represent nonlinear curve fits of the Hill equation to the data. For EC50 values see Table 2. Error bars represent S.D. of 3–11 experiments. All recordings were performed in divalent-free buffer, and oocytes were clamped at –30 mV. Original recordings have also been deposited with Dryad and summarized and assigned in Table 1—source data 1.

Figure 4 with 1 supplement
ATP-induced L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP) fluorescence changes in the P2X7 TM2 domain.

(A) Overview and close-up of the three P2X7 subunits (in wheat, gray, and purple) with the TM helices as cartoon representations (in wheat, gray, and green) and the ANAP-substituted residues S339, T340, and L341 (in red). (B) Representative voltage clamp fluorometry (VCF) recordings from the indicated mutants in response to 0.3 mM ATP (upon second application) and summary of results at two different emission wavelengths. Note that recordings from all constructs were compromised by high leak currents. Graphs compare maximal fluorescence signals during first (closed circles) and second (open circles) ATP applications (interval 195 s). Data are represented as mean ± S.E.M. Significance was determined using the two-tailed paired Student’s t-test (*, p<0.05; **, p<0.005). (C) Representative recordings and summary (performed as in B) from P2X7(T340*) with filter set 2. (D) Overlay of VCF recordings from P2X7(T340*) upon first (colored) and second (gray) ATP applications (0.3 mM) at two different emission wavelengths. Averaged VCF recordings from 11 oocytes are shown as lines, and standard deviations are plotted as envelopes. Baseline currents (15 s before ATP application) were adjusted for clarity. All recordings were performed in divalent-free buffer, and oocytes were clamped at –30 mV. Wavelengths passed by the used filter sets are indicated. Original recordings have also been deposited with Dryad and summarized and assigned in Table 1—source data 1.

Figure 4—figure supplement 1
L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP) in TM2 causes leakiness and affects current facilitation.

(A) Representative current traces showing the effect of the P2X7 antagonist A438079 (100 µM) on baseline currents of mutants containing ANAP within TM2 (T340*, L341*) and on wt P2X7. A438079 was diluted from a 10 mM stock in Dimethyl sulfoxide (DMSO) using divalent-free buffer and applied into the static bath. Control experiments were conducted with 1% DMSO. Oocytes were clamped at –30 mV. (B) Box plot showing 10–50% rise times (in seconds) of the first and second current (black) and fluorescence (blue) responses to 0.3 mM ATP (interval 195 s) for P2X7(T340*). Significance was determined using the two-tailed paired Student’s t-test (*, p<0.05; ns, not significant). Original recordings have also been deposited with Dryad and summarized and assigned in Table 1—source data 1.

Figure 5 with 3 supplements
L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP) incorporation into 41 positions of the cytosolic P2X7 domain identified seven positions that report ATP-induced fluorescence changes.

(A) Surface representation of all three P2X7 subunits (in wheat, gray, and purple) showing location of the juxtamembrane regions and close up (top view) detailing the anchor and cap domains (in yellow and blue, respectively) and ANAP-substituted positions (in red) within a single P2X7 subunit. (B) Representative voltage clamp fluorometry (VCF) recordings and data summary from P2X7R mutants containing ANAP at different positions within the N-terminus. Responses to 0.3 mM ATP were recorded at two different emission wavelengths. Graphs compare maximal fluorescence signals during first (closed circles) and second (open circles) ATP applications (interval 195 s). Data are represented as mean ± S.E.M. (C) Overlay of VCF recordings from P2X7(F11*) upon first (colored) and second (gray) ATP application (0.3 mM) at two different emission wavelengths. Lines represent averaged VCF recordings from 13 oocytes. Standard deviations are plotted as envelopes. Baseline currents (15 s before ATP application) were adjusted for clarity. (D) Representative VCF recordings from the indicated mutants in response to a second application of 0.3 mM ATP and summary of results at the indicated emission wavelengths (performed as in B). Graphs compare maximal fluorescence signals during first (closed circles) and second (open circles) ATP applications (interval 195 s). Data are represented as mean ± S.E.M. All recordings were performed in divalent-free buffer, and oocytes were clamped at –30 mV. (E) Close-up of the cytoplasmic ballast domain from one P2X7 subunit in cartoon and surface representation highlighting a bound GDP (salmon), surrounding α-helices, and residue A564 (red). (F) Surface representation of the cytoplasmic domains of all three P2X7 subunits (in gray, light blue, and wheat) with bound GDP (salmon). Positions in which ATP-induced ANAP fluorescence changes were identified are shown in red. ANAP-substituted positions in which no fluorescence changes were seen (despite surface expression and current responses) are shown in blue. Original recordings have also been deposited with Dryad and summarized and assigned in Table 1—source data 1.

Figure 5—figure supplement 1
The fluorescence change in P2X7(F11*) is not caused by a dequenching effect of the nearby Trp residue.

(A, B) Comparison of voltage clamp fluorometry recordings from oocytes expressing P2X7(F11*) with or without Trp in position 7 (W7A, F11*). Oocytes expressing either non-mutated P2X7R or P2X7(W7A) served as controls. Recordings from P2X7(F11*) and P2X7 (W7A, F11*) are not significantly different, indicating that L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid in position 11 is not quenched by Trp7. Data are represented as mean ± S.E.M. (C) Surface expression of P2X7(F11*), P2X7(F11*, W7A), and P2X7(W7A), with unmutated P2X7 and uninjected oocytes as positive and negative controls, respectively.

Figure 5—figure supplement 2
Dose-response analysis for intracellular P2X7 mutants F11*, D423*, and A564* and contribution of D423 and A564 deletion mutants to current responses.

(A) Normalized dose-response curves for ATP at wt P2X7 and the indicated L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP)-containing receptors. For EC50 values see Table 2. Error bars represent S.D. of three to eight experiments. (B) Representative voltage clamp fluorometry (VCF) recordings from oocytes that were injected with cRNA encoding P2X7 containing an amber stop codon at D423 or A564 with either ANAP and a master mix containing tRNA-synthetase cRNA, tRNA, and eRF1(E55D) cRNA, or with water to produce P2X7 protein truncated at these positions. ANAP emission was recorded at two different wavelengths (purple: 430–490 nm, green: >500 nm). VCF recordings showed clear ATP-evoked signals only for the oocytes injected with all essential components necessary for ANAP incorporation. Current responses of truncated P2X7Rs were less than 5% of those from positive controls. All recordings were performed in divalent-free buffer, and oocytes were clamped at –30 mV.

Figure 5—figure supplement 3
Elimination of a CaM-binding motif has no apparent effect on current kinetics or fluorescence responses.

(A) ΔCaM-P2X7 contained the single point mutations I541T, S552C, and V559G (Roger et al., 2010). Overlay of representative current traces during first (dark gray) and second (light gray) ATP applications (0.3 mM, applied in 195 s interval). Baseline currents (15 s before ATP application) were adjusted for clarity. (B) Box plot showing 10–50% rise times (in seconds) of the first and second current responses for wt P2X7 and ΔCaM P2X7. Significance was determined using the two-tailed paired Student’s t-test (**, p<0.005; ns, not significant). All recordings were performed in divalent-free buffer, and oocytes were clamped at –30 mV. (B) Representative voltage clamp fluorometry (VCF) recordings in response to the second ATP application of the indicated mutants ΔCaM F11*, n=2 (3); ΔCaM, S124*, n=1 (3); ΔCaM, K127*, n=3 (8); ΔCaM, D423*, n=4 (9); ΔCaM, A564*, n=3 (15) with n and numbers in brackets indicating the number of successful and total VCF recordings, respectively. All recordings were performed in divalent-free buffer, and oocytes were clamped at –30 mV.

Figure 6 with 3 supplements
Double-labeled P2X7Rs as potential tools to analyze intracellular domain movements, downstream signaling events, and protein interactions.

(A) Scheme of a P2X7 subunit double-labeled with L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP) and tetramethyl-rhodamine-maleimide (TMRM) (F11*, S124C) and overlay of fluorescence and current responses to first (colored) and second (gray) ATP applications (0.3 mM) at the indicated emission wavelengths. Lines represent averaged voltage clamp fluorometry (VCF) recordings from five different oocytes and standard deviations are plotted as envelopes. Baseline currents (15 s before ATP application) were adjusted for clarity. (B) Scheme of P2X7(K127*) subunit C-terminally fused to R-GECO1.2 and representative VCF recording in response to 0.3 mM ATP. Recordings were performed in buffer containing 0.5 mM Ca2+. (C) Scheme showing the P2X7(Y595*)-CaM-M13-mNeonGreen construct that served as positive control for recordings of FRET between ANAP and mNeonGreen. Ca2+ entry through the P2X7R is supposed to induce conformational changes in the CaM-M13-mNeonGreen reporter, which are detected as a FRET signal. A representative VCF recording in response to 0.3 mM ATP is shown. In all recordings, oocytes were clamped at –30 mV.

Figure 6—figure supplement 1
Ca2+-containing buffers cause large fluorescence changes, even in the absence of L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP).

(A) In Ca2+-containing buffers, voltage clamp fluorometry (VCF) recordings from unmutated wt P2X7R (left) showed large irregular fluorescence changes in the ANAP emission range, even in the absence of ANAP. These masked ATP-evoked and ANAP-specific fluorescence signals from ANAP-substituted P2X7(T340*) (right). (B) The irregular fluorescence changes in Ca2+-containing buffers could be prevented by injection of EGTA (1 mM) 3–4 hr before the measurement. (C) VCF recordings of oocytes expressing P2X7(F11*) in divalent-free buffer supplemented with EGTA and flufenamic acid (left) and in buffer containing 0.5 mM Ca2+ (center and right). (D) VCF recordings of oocytes expressing P2X7(S124*) and P2X7(S124*)-R-GECO1.2. The Ca2+-dependent fluorescence changes are only detected in the ANAP emission spectrum. If not otherwise indicated, recordings were performed at –30 mV in divalent-free buffer supplemented with EGTA and flufenamic acid. (E) ANAP (1 μM) and the indicated CaCl2 concentrations were dissolved in otherwise divalent-free recording solution. Fluorescence emission spectra were measured using a Tecan Reader Infinite M200 Pro (excitation 360 nm) and normalized to the averaged fluorescence emission at the maximum emission (492 nm, dotted line) of buffer containing only ANAP. Note that values for the (1 M Ca2+ + ANAP)–solution were out of measurement range.

Figure 6—figure supplement 2
Control constructs and corresponding voltage clamp fluorometry recordings to confirm the specificity of the FRET signals.

Scheme representing the constructs tested (left) with fluorescence signals at two different emission wavelengths (for L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid [ANAP; blue] and mNeonGreen [green], respectively) summarized as horizontal bar diagrams (right). The positive control P2X7(Y595*)-CaM-M13-mNeonGreen is the only construct showing negative fluorescence signals for ANAP and positive signals for mNeonGreen, consistent with FRET. The control constructs containing only ANAP show either negative or no fluorescence signal for mNeonGreen. Constructs without sites for ANAP incorporation but co-injected ANAP (as master mix with tRNA and cRNAs) served as a control for background fluorescence. Error bars represent S.E.M. Numbers of experiments are given in brackets.

Figure 6—figure supplement 3
Experiments with L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid (ANAP)-containing P2X7 constructs and soluble mNeonGreen-tagged CaM reveal unspecific fluorescence signals.

The indicated ANAP-containing P2X7 constructs were co-injected with soluble mNeonGreen-tagged CaM and ANAP-Master Mix containing ANAP, tRNA, cRNA encoding tRNA-syntethase, and cRNA encoding eRF1(E55D). Corresponding fluorescence signals at two different emission wavelengths are summarized for ANAP (blue) and mNeonGreen (green). Note that soluble mNeonGreen-tagged CaM appeared to interact with the co-injected ANAP. Error bars represent S.E.M. Numbers of experiments are given in brackets.

Tables

Table 1
Summary of surface expression, current responses (ΔI), and L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid fluorescence changes (%ΔF/F) of the investigated P2X7 mutants.
PositionSurface expressionΔI%ΔF/F Filter set 1%ΔF/F Filter set 2
Full-lengthTruncated430–470 nm470–500 nm430–490 nm>500 nm
N-terminusA3++
C5++(–)(–)
S6+(–)(–)(–)(–)
W7++(↑)(↑)
V10+(+)(–)(–)(↑)(↑)
F11++(–)(–)
K17+(+)(–)(–)(–)(–)
Head domainP120++(↑)(↑)
E121++(–)(–)
Y122++
P123++n.d.n.d.
S124++
R125++
G126++
K127++
Q128++
TM2G338n.d.n.d.(–)(–)
S339++
T340++– / ↓
L341++(↑)(↑)
C-terminusN356+(+)(–)(–)(–)(–)
T357++(+)(–)(–)(–)(–)
Y358+++(–)(–)
A359++(+)(–)(–)(–)(–)
T361+++(–)(↓)
R364++(+)n.d.n.d.(–)(–)
C371+++(–)(–)
A378++(+)(–)(–)n.d.n.d.
R385++(+)n.d.n.d.(–)(–)
K387++n.d.n.d.(–)(–)
C388++n.d.n.d.(–)(–)
V392++(+)(–)(–)(–)(–)
E406++(+)(–)(–)(–)(–)
Q422++n.d.n.d.(–)(–)
D423+++(–)(–)
V424++n.d.n.d.(–)(–)
Q433++(+)(–)(–)n.d.n.d.
T434++(+)(–)(–)n.d.n.d.
F436+++n.d.n.d.(–)(–)
UnresolvedS445+++(–)(–)(–)
P450+++
Q455+++
Q460++(+)(–)(–)(–)(–)
E465++(+)(–)(–)n.d.n.d.
S470++(+)(–)(–)n.d.n.d.
C-terminusE489+++(–)(–)
N490+++(–)(–)
V517+++n.d.n.d.
L523+++n.d.n.d.
L527+++n.d.n.d.
L536+++(–)(–)
E537+++
G538+(–)(–)(–)(–)
E539+++(–)(–)
A564+?+n.d.n.d.
L569+?(+)n.d.n.d.(–)(–)
I577+?n.d.n.d.(–)(–)
Q585+?+(–)(–)
G586+?+(–)(–)
Y595+?+
596+?+
  1. + and − indicate presence and absence of protein or signals, respectively. In case of current responses, + means response comparable to wt receptors and (+) means reduced responses. ↑ and ↓ indicate positive and negative fluorescence signals, respectively. 3–50 oocytes were measured per construct and filter set. In case of fluorescence responses, symbols in brackets indicate where less than three recordings met the criteria defined in the methods (mostly because of impaired fucntionality) and represent tendencies only. ?, not distinguishable (because of similar length of full-length and truncated constructs); n.d., not determined.

Table 1—source data 1

Summarized data for Table 1 with assignment to the original VCF recordings; also including data from Figure 2—figure supplement 1B (box plot); Figure 3C, D, E, F; Figure 3—figure supplement 3C; Figure 4B, C, D; Figure 4—figure supplement 1B; and Figure 5B, C, D. The respective original recordings are deposited with Dryad.

https://cdn.elifesciences.org/articles/82479/elife-82479-table1-data1-v2.zip
Table 2
EC50 values for ATP and Hill coefficients (nH) at wt and L-3-(6-acetylnaphthalen-2-ylamino)–2-aminopropanoic acid-containing P2X7 receptor constructs.
MutantEC50 (M)nH
Wt4.202e-005 (3.211e-005–5.704e-005)1.049 (0.7962–1.380)
F11*7.802e-005 (6.268e-005–9.893e-005)1.148 (0.9345–1.410)
S124*8.316e-005 (6.068e-005–0.0001236)1.122 (0.8271–1.519)
F11*, S124C0.0001003 (8.439e-005–0.0001216)1.290 (1.069–1.571)
K127*6.511e-005 (4.281e-005–0.0001339)0.6601 (0.4779–0.8662)
D423*6.513e-005 (4.729e-005–0.0001057)1.240 (0.8087–1.821)
A564*5.159e-005 (3.491e-005–9.976e-005)0.7810 (0.5364–1.087)
  1. Number in brackets are 95% confidence intervals, n=3–11.

Appendix 1—key resources table
Reagent type (species) or resourceDesignationSource or referenceIdentifiersAdditional information
Recombinant DNA reagentcDNA Xenopus laevis eRF1(E55D)NCBI Reference Sequence: NM_001090894.1, Life Technologies / Thermo Fisher ScientificGeneArt String DNA fragment (cloned into pET28a and pNKS2)
Recombinant DNA reagentcDNA Rattus norvegicus P2X7in modified pUC19 (pUC19o)
Recombinant DNA reagentcDNA Rattus norvegicus P2X1Lörinczi et al., 2012in pNKS2
Recombinant DNA reagentcDNA Rattus norvegicus calmodulin-1UniProt: PDP29; NCBI Reference Sequence: NM_031969.3Codon-optimized for Xenopus laevis (Invitrogen / Thermo Fisher Scientific), C-terminally linked to Rattus norvegicus P2X7 via GS-linker (ggatct)
Recombinant DNA reagentPlasmid: pNKS2Gloor et al., 1995
Recombinant DNA reagentPlasmid: pUC19New England Biolabs GmbHCAT# N3041S
Recombinant DNA reagentPlasmid: pANAPChatterjee et al., 2013CAT#48696
Recombinant DNA reagentEGFPYang et al., 1996the original enhanced GFP, mammalian codon-optimized, C-terminally linked to Rattus norvegicus P2X1 via GSAGSA-linker sequence (ggatctgcaggatctgca)
Recombinant DNA reagentR-GECO1.2Wu et al., 2013Addgene #45494
Recombinant DNA reagentmNeonGreenShaner et al., 2013Codon-optimized for Xenopus laevis (Invitrogen / Thermo Fisher Scientific)
Recombinant DNA reagentM13-like peptide from CaM-dependent kinaseRattus norvegicus myosin light chain kinase, smooth muscle; Uniprot: D3ZFU9RRKWQKTGNAVRAIGRLSSM; cloned between Rattus norvegicus calmodulin-1 and mNeonGreen with N- and C-terminal GS-linkers (ggcagc and ggatct, respectively)
Sequence-based reagentOligonucleotidesmetabion GmbH
Sequence-based reagentAmber suppressor tRNA, synthesized oligonucleotide, sequence derived from pANAP, an universal 3’-terminal CCA-sequence was added: 5'-gcc cgg aug gug gaa ucg gua gac aca agg gau ucu aaa ucc cuc ggc guu cgc gcu gug cgg guu caa guc ccg cuc cgg gua cca –3'biomers.net GmbH; Chatterjee et al., 2013; Durner and Nicke, 2022
Sequence-based reagentSanger sequencingEurofins Genomics, https://eurofinsgenomics.eu/
Sequence-based reagent5’-UTR, GeneArt String DNA fragment (cloned into pUC19 (small letters) before the start codon (italic letters)), gtacccggggatcctctTAATACGACTCACTATAGGCTTGTTCTTTTTGCAGAAGCTCAGAATAAACGCTCAACTTTGGCTCGAGGCCACCatgLife Technologies / Thermo Fisher Scientific, Kozak, 1987
Sequence-based reagent3’-UTR, (cloned into pUC19 (small letters) after the stop codon
(italic letters)), tgaCCCAAAACAAAAACGGAATATG
CAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTCTAGAGCGGCCGCagagtcgacctgcagg
pNKS2, Gloor et al., 1995
Peptide, recombinant proteinEcoRI-HFNew England Biolabs GmbHCAT#R3101S
Peptide, recombinant proteinNotI-HFNew England Biolabs GmbHCAT#R3189S
Commercial assay or kitGibson Assembly Master MixNew England Biolabs GmbHCAT#E2611L
Commercial assay or kitQ5 Site-Directed Mutagenesis KitNew England Biolabs GmbHCAT#E0552S
Commercial assay or kitMinElute Reaction Cleanup KitQIAGEN GmbHCAT#28204
Commercial assay or kit
Commercial assay or kitMacherey-Nagel NucleoSpin Gel and PCR Clean-up KitFisher Scientific / Thermo Fisher ScientificCAT# 11992242
Commercial assay or kitmMESSAGE mMACHINE T7 Transcription KitInvitrogen / Thermo Fisher ScientificCAT# AM1344
Commercial assay or kitmMESSAGE mMACHINE SP6 Transkription KitInvitrogen / Thermo Fisher ScientificCAT#AM1340
Chemical compound, drugATP disodium salt hydrateSigma-AldrichCat#A3377
Chemical compound, drugL-ANAP trifluoroacetic saltAsisChem Inc.Cat#ASIS-0014
Chemical compound, drugL-ANAP methyl esterAsisChem Inc.Cat#ASIS-0146
Chemical compound, drugCollagenase NB 4 G proved gradeNordmark Pharma GmbHCat#S1746502
Chemical compound, drugGentamicin sulfateRothCAT#0233.4
Chemical compound, drugCy5 Mono NHS EsterMerck / Sigma-AldrichCAT#GEPA15101
Chemical compound, drugPefabloc SCMerck / Sigma AldrichCAT#76307
Chemical compound, drugn-Dodecyl-β-D-Maltoside, ULTROL gradeMerck / Sigma AldrichCAT#324355
Chemical compound, drugNi-NTA AgaroseQIAGEN GmbHCAT#1018244
Chemical compound, drugFlufenamic acidMerck / Sigma AldrichCAT#F9005
Chemical compound, drug0.5 M EDTA ph 8.0Thermo ScientificCAT#R1021
Chemical compound, drugTMRMBiomolCAT#ABD-419
Chemical compound, drugA 438079 hydrochlorideTOCRISCAT#2972
Software, algorithmCellWorks E 5.5.1npi electronic, http://cellworks.de/
Software, algorithmPyMOLhttp://www.pymol.org/RRID:SCR_000305
Software, algorithmPython Programming Language 3.10.4http://www.python.org/RRID:SCR_008394
Software, algorithmNumPy 1.22.3http://www.numpy.orgRRID:SCR_008633
Software, algorithmMatPlotLib 3.5.1http://matplotlib.sourceforge.netRRID:SCR_008624
Software, algorithmSciPy 1.8.0http://www.scipy.org/RRID:SCR_008058
Software, algorithmGraphPad Prism 9.3.0 and 9.5.0http://www.graphpad.com/RRID:SCR_002798
Software, algorithm(Fiji Is Just) ImageJ 2.3.0Schindelin et al., 2012, http://fiji.scRRID:SCR_002285
OtherTurbo Tec-05X Amplifiernpi electronic GmbHCAT#TEC-05XVCF-Setup components, electronics
OtherPCI-6221, DAQ, Multifunction I/O Device, 16-BitNational InstrumentsCAT# 779066–01VCF-Setup components, electronics
OtherSingle-channel fully programmable Instrumentation Amplifier Low Pass Filter, USBPGF-S1/L with 8th pole Bessel filter characteristicsAlligator TechnologiesCAT#USBPGF-S1/LVCF-Setup components, electronics
Other2 x MPPC modulesHamamatsu Photonics K.K.CAT#C13366-3050GAVCF-Setup components, electronics
OtherPower adapter/linear regulatorKNIEL System-Electronic GmbHCustom-madeVCF-Setup components, electronics
OtherAxiovert 200 inverted fluorescence microscopeCarl Zeiss Microscopy LLCVCF-Setup components, optics
OtherObjektiv W N-Achroplan 63 x/0,9 M27Carl Zeiss Microscopy LLCCAT#420987-9900-000VCF-Setup components, optics
OtherM565L3, mounted LED at 565 nmThorlabs GmbHCAT#M565L3VCF-Setup components, optics
OtherM365LP1, Mid Power Mounted LED at 365 nmThorlabs GmbHCAT#M365LP1VCF-Setup components, optics
Other2× lenses for LED collimationThorlabs GmbHCAT#ACL2520U-AVCF-Setup components, optics
OtherET555/20×, 25 mm Dia Mounted, Single Bandpass Filter (for excitation)Chroma Technology GmbHCAT# IN026697VCF-Setup components, optics
OtherET365/20×, 25 mm Dia Mounted, Single Bandpass Filter (for excitation)Chroma Technology GmbHCAT# IN053211VCF-Setup components, optics
OtherT387lp, 25.5×36×1 mm, Longpass Dichroic BeamsplitterChroma Technology GmbHCAT# IN040921VCF-Setup components, optics
Other79003bs, Multi Dichroic BeamsplitterChroma Technology GmbHCAT# CS294227VCF-Setup components, optics
Other59002bs, Multi Dichroic BeamsplitterChroma Technology GmbHCAT# IN040206VCF-Setup components, optics
OtherT425lpxr,25.5×36×1 mm, Longpass Dichroic BeamsplitterChroma Technology GmbHCAT# IN025246VCF-Setup components, optics
OtherRelay lenseThorlabs GmbHCAT#AC254-060-AVCF-Setup components, optics
OtherDMLP550R, Longpass Dichroic BeamsplitterThorlabs GmbHCAT#DMLP550RVCF-Setup components, optics
OtherT470lpxr, Longpass Dichroic BeamsplitterChroma Technology GmbHCAT# IN030502VCF-Setup components, optics
OtherT495lpxr, 25.5×36×1 mm, Longpass Dichroic BeamsplitterChroma Technology GmbHCAT# IN005752VCF-Setup components, optics
OtherET490/40×, 25 mm Dia Mounted (for emission)Chroma Technology GmbHCAT# IN039532VCF-Setup components, optics
OtherET610/75 m, 25 mm Dia Mounted (for emission)Chroma Technology GmbHCAT# IN036520VCF-Setup components, optics
OtherET455/50 m (for emission)Chroma Technology GmbHCAT# IN067607VCF-Setup components, optics
OtherET500lp, 25 mm Dia Mounted (for emission)Chroma Technology GmbHCAT# IN006640VCF-Setup components, optics
OtherMF460-60 (for emission)Thorlabs GmbHCAT#MF460-60VCF-Setup components, optics
Other2× lenses for focusing on MPPCThorlabs GmbHCAT#LB1761-AVCF-Setup components, optics

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  1. Anna Durner
  2. Ellis Durner
  3. Annette Nicke
(2023)
Improved ANAP incorporation and VCF analysis reveal details of P2X7 current facilitation and a limited conformational interplay between ATP binding and the intracellular ballast domain
eLife 12:e82479.
https://doi.org/10.7554/eLife.82479