(A) Magnetic resonance images of an angiomatosis of soft tissue (AST) lesion (arrows) in the soleus muscle show the replacement of the normal muscle by dilated venous channels, diffusely enhancing …
RNA-seq data revealed that the highest levels of transforming growth factor A (TGFA) and epigen (EPGN) mRNA were detected in patient-derived endothelial cells (ECs) having an oncogenic PIK3CA …
(A) Further analysis demonstrated 818 differentially expressed genes (DEGs) between PIK3CAmut+ Patient endothelial cells (ECs) and HUVEC, and 327 DEGs between PIK3CAmut+ Patient ECs and human …
(A) RT-qPCR analysis showed significantly higher expression of TGFA mRNA (with two different assays) in VM and AST tissue than in the control group. Mean and SEM are presented (lesions n=11; control …
RT-qPCR analysis showed a trend (p = 0.0782) toward higher expression of transforming growth factor A (TGFA) mRNA in venous malformation (VM) and angiomatosis of soft tissue (AST) patient tissues …
Raw data for western blot images.
A) RT-qPCR analysis of ErbB1 ligand amphiregulin (AREG) mRNA in venous malformation (VM) and angiomatosis of soft tissue (AST) lesions. Mean and SEM are presented (lesions n=10; control group, n=4; …
scRNAseq data from mouse lower limb skeletal muscle (Tabula Muris, czbiohub.org) of epidermal growth factor receptor (EGFR) (A–B) and transforming growth factor A (TGFA) (C–D) expression. EGFR was …
(A) Several shared MSigDB Hallmarks were found in bulk RNA-seq data from (i) patient-derived endothelial cells (ECs) vs control ECs (left panel), and (ii) ECs expressing PIK3CAwt or most common …
(A) In-line with previous publications (Limaye et al., 2015), expression of oncogenic PIK3CAH1047R induced morphological changes in HUVECs. Representative images of HUVECs transfected with a …
Gene set enrichment analysis (GSEA) for RNAseq data from done for upregulated (A–B) or down-regulated (C–D) differentially expressed genes (DEGs) confirms that the RNA-seq data from HUVECs …
(A) RT-qPCR analysis of VEGFA mRNA expression in patient stromal cells (SCs) and control fibroblasts (SCs, n=6; HPF-c, n=3). Two-tailed Mann-Whitney U test (data not normally distributed). *, p<0.05.…
(A–B) Venous malformation (VM) patient SCs induce sprouting of genotypically normal ECs. HUVECs on collagen-coated beads were embedded into a fibrin gel and patient SCs or control HPF-c cells were …
rhTGFA stimulation of HPF-c cells increased VEGFA mRNA expression (A, 6 hr) and VEGF-A protein secretion (B, 24 hr). The data is from three independent experiments done in triplicates. Two-tailed …
Knock-down of transforming growth factor A (TGFA) was performed using siRNA targeting to TGFA and non-targeting control siRNA as a control. Just prior to imaging, HUVECs and HPF-c were mixed at a …
(A) Subcutaneous injection of matrigel with HUVECs transduced with PIK3CAwt or PIK3CAH1047R encoding lentivirus vectors, with or without primary fibroblasts, was performed in athymic Nude-Foxn1nu …
Subcutaneous injection of matrigel with HUVECs transfected with wt or PIK3CAH1047R expressing lentivirus vectors with/without primary fibroblasts was performed in athymic Nude-Foxn1nu mice. (A) …
(A) Afatinib decreased EGFR/ErbB1-phosphorylation in rhTGFA-stimulated HPF-c cells. Total epidermal growth factor receptor (EGFR) was used to control equal loading of the samples. (B) VEGF secretion …
Raw data for western blot images.
Subcutaneous injection of matrigel with HUVECs transfected with PIK3CAH1047R expressing lentivirus vectors with primary fibroblasts was performed in athymic Nude-Foxn1nu mice. After lesions reached …
Patient | Gender | Age | Pathological diagnosis | # of lesions | Tissue* | Location | Somatic mutation(Fractional abundance §) |
---|---|---|---|---|---|---|---|
1 †, ‡ | F | 11 | AST | 1 | im | calf | ND |
2 †,‡ | M | 34 | AST | 1 | im | shoulder | PI3KCA p.E542K (WTL: 10.25; EC: 50.65; SC: none) |
3 †,† | M | 16 | AST | 1 | im | calf | PI3KCA p.H1047R (WTL: 18.80; EC: 44.00; SC: none) |
4 †, ‡ | F | 16 | AST | 1 | sc | shin | PI3KCA p.H1047L (WTL: 8.30; EC: 48.95; SC: none) |
5† | F | 17 | AST | 1 | im | back | ND |
6 | M | 34 | AST | 1 | im | thigh | ND |
7 | M | 17 | AST | 1 | im | thigh | PI3KCA p.E542K (WTL: 7.32) |
8 | F | 31 | AST | 1 | im | thigh | PI3KCA p.H1047R (WTL: 5.07) |
9 | F | 22 | AST | 1 | im | thigh | PI3KCA p.H1047R (WTL: 13.10) |
10 | F | 13 | AST | 1 | im, sc | foot | PI3KCA p.E545K (WTL: 11.65) |
11 | M | 19 | AST | 1 | im | thigh | PI3KCA p.H1047R (WTL: 8.89) |
12 | M | 13 | AST | 1 | im, sc | ankle | PI3KCA p.H1047R (WTL: 12.60) |
13 | F | 23 | AST | 1 | im | calf | PIK3CA p.Y644H ¶ |
14 | F | 41 | AST | 1 | sc | shin | ND |
15 | F | 25 | AST | 1 | im | foot | PI3KCA p.E545K (WTL: 8.93) |
16 | F | 16 | AST | 1 | im, sc | ankle | PI3KCA p.H1047R (WTL: 5.98) |
17 | F | 46 | AST | 1 | im, sc | back | PI3KCA p.E542K (WTL: 9.83) |
18 | F | 18 | AST | 1 | im, sc | ankle | PI3KCA p.E545K (WTL: 11.35) |
19 | F | 13 | AST | 1 | im | calf | ND |
20 | F | 24 | AST | 1 | im, sm | thigh | PI3KCA p.E542K (WTL: 5.64) |
Tissue: im, intramuscular; sc, subcutaneous; sm, synovial membrane.
ECs and SCs isolated for cell experiments.
used in RNA-seq experiment.
Fractional abundance of the mutation in WTL, whole tissue lysate; EC, endothelial cells; SC, intervascular stromal cells; ND, not detected.
mutation detected by whole-exome sequencing.
Patient | Gender | Age | Pathological diagnosis | # of lesions | Tissue* | Location | Somatic mutation(Fractional abundance in whole tissue lysate) § | |
---|---|---|---|---|---|---|---|---|
21 | M | 34 | VM | 1 | im | thigh | TEK p.Y1108X ¶ | |
22 ,†, ‡ | F | 77 | VM | 6 | sc | neck, fossa cubitalis, chest, hip, big toe | TEK p.L914F (5.63) | |
23 | M | 40 | VM | 2 | im | chest, back | ND | |
24 | F | 69 | VM | 3 | im, sc | forearm **, hand | TEK p.L914F (10.01) | |
25 | M | 24 | VM | 2 | sc | ankle, sole | PI3KCA p.H1047L (3.83) | |
26 | M | 14 | VM | 1 | sc | lip | TEK p.L914F (16.31) | |
27 | F | 39 | VM | 1 | im | chest | ND | |
28 | M | 28 | VM | 1 | sc | clavicle | TEK p.L914F (5.95) | |
29 | M | 46 | VM | 1 | sc | shin | ND | |
30 | M | 31 | VM | 1 | sc | knee | TEK p.L914F (10.60) | |
31 | F | 21 | VM | 1 | im, sc, sm | knee | ND | |
32 | M | 16 | VM | 1 | im, sc, sm | thigh, knee | ND | |
33 | M | 9 | VM | 1 | sc, sm | knee | ND | |
34 | F | 35 | VM | 1 | im, sc | blade | TEK p.L914F (12.10) | |
35 | F | 16 | VM | 1 | sc | ankle | PI3KCA p.E545K (4.34) | |
36 | M | 21 | VM/AST | 1 | im | upper arm | PI3KCA p.H1047R (3.91) | |
37 | F | 41 | VM/AST | 1 | sc | ankle | KRAS p.Q61R ¶ | |
38 | F | 25 | VM/AST | 1 | sc | calf, leg | PI3KCA p.H1047L (5.23) |
Tissue: im, intramuscular; sc, subcutaneous; sm, synovial membrane.
ECs and SCs isolated for cell experiments.
used in RNA-seq experiment.
ND, not detected.
mutation detected by whole-exome sequencing.
The patient had multiple lesions but only a lesion located in the forearm was operated.
GO | Term | Genes* |
---|---|---|
GO:0038127 | ERBB signaling pathway | PRKCE,TNRC6C,PDE1A,AREG, RPS27A,TGFA,KITLG,ERBB2, PTK2B,DGKD,PRKAR2B,NRG1, RPS6KA5,PRKACB |
GO:0043122 | regulation of I-kappaB kinase/ NF-kappaB signaling | GREM1,LURAP1,BIRC3,TNFAIP3, S100A4,MALT1,LITAF,PRKCE, LPAR1,C18orf32,ZFAND6,RPS27A, PLK2,TLR4,F2RL1,CASP1,S100A13 |
GO:0008277 | regulation of G-protein coupled receptor protein signaling pathway | RGS4,RGS9,DYNLT1,RGS11,CXCL8,RGS10,RGS20,RGS5,RAMP2,RGS7, PLCB1,ADRBK2 |
GO:0043410 | positive regulation of MAPK cascade | PAK1,MAP4K2,SEMA4C,TGFA, GADD45G,KSR2,ERBB2,NENF, PLCB1,TPD52L1,GLIPR2,ICAM1, CD74,PRKCE,LPAR1,PDCD10,INSR, IGF1R,GADD45A,RPS27A,PTK2B, KITLG,HGF,F2RL1,TLR4,PIK3CG, ZEB2,EPGN |
GO:0046328 | regulation of JNK cascade | PAK1,MAP4K2,GADD45A,IGF1R, GADD45G,TNXB,PTK2B,CBS,SFRP1,PLCB1,F2RL1,TLR4,TPD52L1,ZEB2 |
GO:0007219 | Notch signaling pathway | HEY2,NOTCH1,TNRC6C,RBX1, TMEM100,LFNG,RPS27A,E2F1, DTX3,NOTCH2,MESP1,DNER, FOXC1,SNAI2,HDAC9 |
ErbB pathway receptors and ligands are marked in bold.
Gene | Description | Assay ID |
---|---|---|
GAPDH | Glyceraldehyde-3-phosphate dehydrogenase | 4352934E |
B2M | Beta-2-microglobulin | Hs00187842_m1 |
TGFA | Transforming growth factor A [assay 1] | Hs00608187_m1 |
TGFA | Transforming growth factor A [assay 2] | Hs00177401_m1 |
TGFA | Transforming growth factor A [assay 3] | HsaCEP0053322 |
ERBB1 | Protein tyrosine kinase ERBB1, epidermal growth factor receptor | Hs01076090_m1 |
AREG | Amphiregulin | Hs00950669_m1 |
NRG1 | Neuregulin 1 | Hs00247620_m1 |
EPGN | Epithelial mitogen, epigen | Hs02385424_m1 |
VEGF-A | Vascular endothelial growth factor A | Hs00900055_m1 |
PIK3CA | Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Catalytic Subunit-α | HsaCEP0050716 |
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Strain, strain background (Mus musculus, female) | Hsd: Athymic Nude-Foxn1nu | Envigo | Autosomal recessive mutation on nu locus on chromosome 11; T-cell deficient; accepts xenograft transplantation. | |
Cell line (Homo sapiens) | HUVEC | This paper | Umbilical cord endothelial cells isolated in house; see materials and methods section | |
Cell line (Homo sapiens) | HSaVEC | PromoCell | # C-12231 | Saphenous vein endothelial cells |
Cell line (Homo sapiens) | HPF-c | PromoCell | # C-12360 | Pulmonary fibroblast |
Transfected construct (Homo sapiens) | LV-PIK3CA | This paper | PIK3CAwt | Lentiviral construct to transfect and express PIK3CA wild-type; produced using Addgene plasmid #116771 |
Transfected construct (Homo sapiens) | LV-PIK3CA-H1047R | This paper | PIK3CAH1047R | Lentiviral construct to transfect and express PIK3CA with oncogenic point mutation on p.H1047R; produced using Addgene plasmid #116500 |
Biological sample (Homo sapiens) | Patients’ AST/VM tissue | This paper | Patients’ lesion | Tissue material collected during surgery; see materials and methods section |
Biological sample (Homo sapiens) | Endothelial cells from patients’ AST/VM | This paper | Patient EC (CD31+) | Freshly isolated from AST/VM tissue; see materials and methods section |
Biological sample (Homo sapiens) | Stromal cells from patients’ AST/VM | This paper | Patient SC (CD31-/ Vimentin+) | Freshly isolated from AST/VM tissue; see materials and methods section |
Recombinant DNA reagent | pHAGE-PIK3CA | Addgene | # 116771 | Plasmid encoding PIK3CA wild-type |
Recombinant DNA reagent | pHAGE-PIK3CA-H1047R | Addgene | # 116500 | Plasmid encoding PIK3CA with oncogenic point mutation on p.H1047R |
Sequence-based reagent | siRNA: nontargeting control #1 | Thermo Fisher Scientific | # 4390844 | Silencer Select siRNA |
Sequence-based reagent | siRNA: nontargeting control #2 | Thermo Fisher Scientific | # 4390847 | Silencer Select siRNA |
Sequence-based reagent | siRNA: targeting to human TGFA | Thermo Fisher Scientific | Assay ID: s14053 | Silencer select siRNA |
Sequence-based reagent | PrimePCR ddPCR mutation detection assays for PIK3CA c.3140A>G (p.H1047R) | Bio-Rad | Assay IDs: dHsaMDM5225715851 (mut) and dHsaMDW5225715853 (wt) | |
Sequence-based reagent | PrimePCR ddPCR mutation detection assays for PIK3CA c.3140A>T (p.H1047L) | Bio-Rad | Assay IDs: dHsaMDM2916088171 (mut) and dHsaMDW2916088173 (wt) | |
sequence-based reagent | PrimePCR ddPCR mutation detection assays for PIK3CA c.1633G>A (p.E545K) | Bio-Rad | Assay IDs: dHsaMDM9869636521 (mut) and dHsaMDW9869636523 (wt) | |
sequence-based reagent | PrimePCR ddPCR mutation detection assays for PIK3CA c.1624G>A (p.E542K) | Bio-Rad | Assay IDs: dHsaMDM3010833491 (mut) and dHsaMDW3010833493 (wt) | |
sequence-based reagent | Custom-design Taqman SNP Genotyping assays for TEK c.2740C>T (p.L914F) | Thermo Fisher Scientific | # 4331349 | fwd 5’-CTTCCCTCCAGGCTACTT-3’, rev 5’-AATGCTGGGTCCGTCT-3’, reporter 1 (HEX) 5’-CTTGCGAAGGAAGTCCAGAAGGTTTC-3’, and reporter 2 (FAM) 5’- CTTGCGAAAGAAGTCCAGAAGGTTTC-3’ |
peptide, recombinant protein | rhTGFA | Sigma-Aldrich | # GF313 | |
commercial assay or kit | Human CD31 microbead kit | Miltenyi Biotec | # 130-091-935 | |
commercial assay or kit | RNeasy Mini Kit | Qiagen | # 74106 | |
commercial assay or kit | Human Quantikine TGFA ELISA | R&D Systems | # DTGA00 | |
commercial assay or kit | Human Quantikine VEGF ELISA | R&D Systems | # DVE00 | |
chemical compound, drug | Afatinib | MedChem Express | # HY-10261 | |
software, algorithm | SproutAngio | https://github.com/mbbio/SproutAngio (Beter et al., 2023) | Open access tool for quantitation |
NGS experiments.
gBlock gene fragments.