(A–C) Top view of 21-day-old rosettes from WT (col-0) (A), shr-2 mutant (B) and scr-4 mutant (C). Scale bar represents 1 cm. (D) Mean flower plastochron in WT (n=21), shr-2 mutant (n=20) and scr-4 …
(A–D) Plant phenotypes of 42-day-old WT (n>30) (A), shr-2 mutant (n>35) (B), scr-3 mutant (n>30) (C) and scr-4 mutant (n>30) (D). Scale bars represent 1 cm. (A’-D’) Top view of 31-day-old …
(A) Representative 3D projection of shoot apical meristem at 5 weeks after germination expressing pSHR:YFP-SHR reporter (green) (n≥6). The lower right inset shows a longitudinal optical section …
(A) Representative 3D projection of shoot apical meristem at 5 weeks after germination expressing pSHR:ntdTomato reporter (green). Cell walls were stained with DAPI (red) (n≥5). Scale bar represents …
(A and B) Representative 3D projection of shoot apical meristem at 5 weeks after germination coexpressing pSHR:YFP-SHR reporter (green) and pSCR:SCR-RFP reporter (red) (A) (the lower left inset …
SHR regulates CYCD6;1 expression in the shoot apical meristem. (A) Representative 3D projection of shoot apical meristems at 5 weeks after germination expressing pJKD:JKD-YFP reporter (green) …
(A) Quantification of the epidermal cell area in the meristem region of WT (n=10) and jkd-4 mutant (n=10). (B–D) Representative 3D projection of shoot apical meristems at 5 weeks after germination …
(A–D) Representative 3D projection of shoot apical meristem at 5 weeks after germination expressing pCYCD1;1-GFP reporter (green) (A), pCYCD3;2-GFP reporter (green) (B), pCYCD3;3-GFP reporter …
(A) Quantitative real-time PCR analysis showing the relative expression levels of SHR and SCR expression in response to auxin (10 µm IAA) in WT shoot apical meristems. The expression level in Col-0 …
(A and B) Representative 3D projection of shoot apical meristems at 5 weeks after germination coexpressing pSCR:SCR-YFP reporter (green) and pSHR:ntdTomato reporter (red) (A) and the pMP:MP-GFP …
(A and B) Representative 3D projection of shoot apical meristems at 5 weeks after germination expressing pSHR:SHR-YFP reporter (magenta) three days after mock (n≥6) (A) or 100 µM NPA treatment (n≥6) …
(A and B) Representative 3D projection of shoot apical meristems at 7 days after germination expressing pSHR-ntdTomato reporter (magenta) in WT (n=4) (A) and mp-B4149 (n=4) (B) mutant vegetative …
(A–D) Plant phenotypes of 42-day-old WT (A), mp-S319 mutant (B), shr-2 mutant (C) and mp-S319 shr-2 double mutant (D). Scale bars represent 1 cm. (A’–D ’) Top view of 31-day-old inflorescences of WT …
(A) Schematic representation of the SHR promoter. The positions of two auxin response elements are shown. Overview of mutated promoter versions of pSHR. AuxREs were mutated and multiple combinations …
(A) Schematic representation of the SHR promoter. The positions of two auxin response elements are shown. Overview of mutated promoter versions of pSHR. AuxREs were mutated and multiple combinations …
(A-H) Representative images of leaves transformed with pSHR variants pSHR (A and B), mAuxRE1 (C and D), mAuxRE2 (E and F) and mAuxRE1+2 (G and H) driving the reporter gene firefly luciferase (FLUC) …
(A–G) Representative images of root apical meristem at 5 days after germination expressing mVenus-NLS driven by the wild-type SHR promoter (A), and the SHR promoter with mutations in AuxRE motifs …
(A) Representative 3D projection of shoot apical meristems at 5 weeks after germination coexpressing pLFY:LFY-GFP (green) and pSCR:SCR-RFP (red) reporters. Chlorophyll (blue). Scale bar represents …
(A and B) Representative 3D projection of shoot apical meristems at 5 weeks after germination expressing pSCL23:H2B-YFP reporter (green) (n≥3) (A) and pSCL23:SCL23-YFP reporter (green) (n≥10) (B). …
(A–C) Representative 3D projection of shoot apical meristems at 5 weeks after germination from WT (A), scl23-2 mutant (B) and scl23-2/pSCL23:SCL23-YFP (C). Cell walls were stained with PI (gray). …
(A–H) Top view of 21-day-old rosettes of WT (A), scl23-2 mutant (B), shr-2 mutant (C), scr-3 mutant (D), scr-3 shr-2 double mutant (E), scl23-2 shr-2 double mutant (F), scl23-2 scr-3 double mutant (G…
(A–D) Representative 3D projection of shoot apical meristems at 5 weeks after germination expressing p35S:SHR-GFP reporter (green) (A), p35S:SCR-GFP reporter (green) (B), pUBIQ10:SCL23-mVenus …
(A–D) Top view of 21-day-old rosettes of Col-0 (A), scl23-2 mutant (B), wus-am mutant (C) and scl23-2 wus-am double mutant (D). Scale bar represents 1 cm. (E–I) plant phenotypes of 36 old L.er (E), …
(A and B) Schematic representation of observed expression patterns of WUS, SCL23, CLV3, JKD, SCR, LFY, SHR, MP and CYCD6;1 in the SAM (A) and WOX5, SCL23, JKD, SCR, SHR MP and CYCD6;1 in the RAM (B).…
(A–D) Representative images of root apical meristem at 5 days after germination expressing, pPIN1:PIN1-GFP reporter (green) (A), pMP:MP-GFP reporter (green) (B), pSHR:YFP-SHR reporter (green) and pSC…
Enzyme | Producer |
---|---|
BSA1 (ECORI) | Thermo Fisher Scientific, Braunschweig, Germany |
Pfuµltra High-Fidelity DNA polymerase | Agilent, Santa Clara, USA |
Phusion High-Fidelity DNA Polymerase | Thermo Fisher Scientific, Braunschweig, Germany |
T4-Ligase | Thermo Fisher Scientific, Braunschweig, Germany |
Taq-DNA-Polymerase | Made in the lab according to Pluthero, 1993 |
Universal SYBR Green Supermix | Bio-Rad |
Purpose | Primer | Sequence |
---|---|---|
SHR promoter cloning | EB-pSHR-F | AAAGGTCTCAACCTGAAGCAGAGCGTGGGGTTTC |
EB-pSHR-R | TTTGGTCTCATGTTTTTTAATGAATAAGAAAATGAATAGAAGAAAGGGGG | |
EB-pSHR-BsaI-site-F | GTTCAAAAGTGGTCCCTTCTCTCTC | |
EB-pSHR-BsaI-site-R | GAGAGAGAAGGGACCACTTTTGAAC | |
SHR CDS cloning | EB-SHR-CDS-F | AAAGGTCTCAGGCTTAATGGATACTCTCTTTAGACTAGTCAG |
EB-SHR-CDS-R | TTTGGTCTCACTGACGTTGGCCGCCACGCACTAG | |
SCR CDS cloning | EB-SCR-CDS-F | AAAGGTCTCAGGCTTAATGGCGGAATCCGGCGATTTC |
EB-SCR-CDS-R | TTTGGTCTCACTGAAGAACGAGGCGTCCAAGCTGAAG | |
EB-SCR-CDS-BsaI-site-1-F | GCCATTATCAGGGACCTTATCC | |
EB-SCR-CDS-BsaI-site-1-R | GGATAAGGTCCCTGATAATGGC | |
EB-SCR-CDS-BsaI-site-2-F | GAAAATGGTATCTGCGTTTCAG | |
EB-SCR-CDS-BsaI-site-2-R | CTGAAACGCAGATACCATTTTC | |
JKD CDS cloning | EB-JKD-CDS-F | AAAGGTCTCAGGCTTAATGCAGATGATTCCAGGAGATCC |
EB-JKD-CDS-R | TTTGGTCTCACTGAACCCAATGGAGCAAACCTTGCG | |
EB-JKD-CDS-BsaI-site-F | GCCCTTGGTGACCTCACTGG | |
EB-JKD-CDS-BsaI-site-R | CCAGTGAGGTCACCAAGGGC | |
SCL23 CDS cloning | EB-SCL23-F | AAAGGTCTCAGGCTTAATGACTACAAAACGCATAGACAG |
EB-SCL23-R | TTTGGTCTCACTGAATCGAACGGCTGAGATTTCC | |
MP CDS cloning | EB-MP-GG-F | AAAGGTCTCAGGCTTAATGATGGCTTCATTGTCTT |
EB-MP-GG-R | TTTGGTCTCACTGATGAAACAGAAGTCTTAAGATC | |
pSHR site-directed mutagen-esis | EB-pSHRΔmAuxRE1-F | CTTTGTATCGAGCCAAACGAG |
EB-pSHRΔmAuxRE1-R | CTCGTTTGGCTCGATACAAAG | |
EB-pSHRΔmAuxRE2-F | TTCACATGGCTCTATGTTACTATG | |
EB-pSHRΔmAuxRE1-R | CATAGTAACATAGAGCCATGTGAA | |
EB-pSHRΔmAuxRE1-2-F | CTTTGTATCGAGCCAAACGAG | |
EB-pSHRΔmAuxRE1-2-R | CTCGTTGTGCTCGATACAAAG | |
EB-pSHRΔmAuxRE2-2-F | ATATTCACATGGGAGTATGTTACTATGTAAATG GTG ACC | |
EB-pSHRΔmAuxRE2-2-R | GGTCACCATTTACATAGTAACATACTCCCATGTGAATAT |
Primer name | Sequence |
---|---|
EB-RT-SHR-F | GATATCGAGTTTCCGACGGT |
EB-RT-SHR-R | CGAAGCAAACCCTAAACCAT |
EB-RT-SCR-F | GTAACCCAAATCTCGGTGCT |
EB-RT-SCR-R | TTGCTGTTGTGGAGGAGAAG |
EB-RT-JKD-F | ATCAACCTGGCACTCCAGA |
EB-RT-JKD-R | GCAGATCTCGCACACGAAT |
EB-RT-LFY-F | TGATGCTCTCTCCCAAGAAGA |
EB-RT-LFY-R | CTTGACCTGCGTCCCAGTA |
EB-SAND-F | AACTCTATGCAGCATTTGATCCACT |
EB-SAND-R | TGATTGCATATCTTTATCGCCATC |
EB-TIP41-F | GTGAAAACTGTTGGAGAGAAGCAA |
EB-TIP41-R | TCAACTGGATACCCTTTCGCA |
Primer name | Sequence |
---|---|
EB-scl23-2-LP | ATGACTACAAAACGCATAGACAG |
EB-scl23-2-RP | TTTGGTCTCACTGAATCGAACGGC |
LBb1.3 | ATTTTGCCGATTTCGGAAC |
mp-S319-LP | CCTGGAAACTGATGAGCTGAC |
mp-S319-RP | CCTTCTTCACTCATCTGCTGG |
LBb1.3 | ATTTTGCCGATTTCGGAAC |
jkd-4-F | GGATGAAAGCAATGCAAAACA |
jkd-4-R | AATGTCGGGATGATGAACTCC |
RB | TCAAACAGGATTTTCGCCTGCT |
scr-4F | CTGCTTCACCTACTGTATGGG |
scr-4R | GGGTCAGAGGAAGAGGAAGG |
Restriction enzyme: Eco57M which should not cut in the mutant | |
shr-2-R | AAATCGAACTTGCGAATTCCT |
shr-2-L | CGCTCAACGAGCTCTCTTCT |
shr-2ins | CAGCAAGACAAGATGGGTCA |
wus-7-F | CCGACCAAGAAAGCGGCAACA |
wus-7-R | AGACGTTCTTGCCCTGAATCTTT |
Restriction enzyme: XmNI which should cut in the mutant |
Name | Description | Backbone | Reference |
---|---|---|---|
pSHR | SHR promoter 2.5 Kb upstream from transcription start | pBlunt | This study |
SHR CDS | SHR coding sequence | pGGC000 | This study |
SCL23 CDS | SCL23 coding sequence | pGGC000 | This study |
linker NLS (pGGD007) | NUCLEAR LOCALIZATION SIGNAL | pGGD000 | Lampropoulos et al., 2013 |
mVenus (pRD43) | mVenus | pGGD000 | Rebecca Burkhart |
FLUC | Firefly luciferase | pGGC000 | Greg Denay |
mVenus (pRD42) | mVenus | pGGC000 | Rebecca Burkhart |
GUS (pGGC051) | coli ß-GLUCURONIDASE | pGGC000 | Lampropoulos et al., 2013 |
MP CDS | MP coding sequence | pGGC000 | This study |
35 S promoter (pGGA004) | Cauliflower mosaic virus 35 S promoter | pGGA000 | Lampropoulos et al., 2013 |
RPS5A promoter (pGGA012) | RIBOSOMAL PROTEIN 5 A promoter | pGGA000 | Lampropoulos et al., 2013 |
UBIQ10 promoter (pGGA006) | UBIQUITIN10 promoter | pGGA000 | Lampropoulos et al., 2013 |
d-dummy (pGGD002) | d-dummy | pGGD000 | Lampropoulos et al., 2013 |
tCLV3 | CLV3 terminator 1257 bp downstream of transcription stop | pGGE000 | Jenia Schlegel |
UBQ10 terminator (pGGE009) | UBQ10 terminator | pGGE000 | Lampropoulos et |
BastaR (pGGF008) | pNOS:BastaR:tNOS | pGGF000 | Lampropoulos et al., 2013 |
GR (pRD64) | Hormone-binding domain of the glucocorticoid receptor | pGGD000 | Rebecca Burkhart |
pCLV3 | CLV3 promoter 1480 bp upstream from transcription start | pGGA000 | Jenia Schlegel |
mega-element (pGGB002) | Omega- element | pGGB000 | Lampropoulos et al., 2013 |
Name of construct | Promoter | N-Tag | CDS | C-Tag | Terminator | Resistance |
---|---|---|---|---|---|---|
pCLV3:SCL23-mVenus | pCLV3 | Ω- element (pGGB002) | SCL23 CDS | mVenus | tCLV3 | BastaR (pGGF008) |
pRPS5A:SCL23-mVenus | pRPS5A | Ω- element (pGGB002) | SCL23 CDS | mVenus | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pUBIQ10:SCL23-mVenus | pUBIQ10 | Ω- element (pGGB002) | SCL23 CDS | mVenus | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pUBIQ10:MP-GR | pUBIQ10 | Ω- element (pGGB002) | MP CDS | GR | tUBQ10 (pGGE009) | BastaR (pGGF008) |
p35S:GUS | p35S | Ω- element (pGGB002) | GUS | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
p35S:MP | p35S | Ω- element (pGGB002) | MP CDS | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHR:mV-NLS | pSHR | Ω- element (pGGB002) | mVenus | linker NLS (pGGD007) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE1:mV-NLS | pSHRΔmAuxRE1 | Ω- element (pGGB002) | mVenus | linker NLS (pGGD007) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE2:mV-NLS | pSHRΔmAuxRE2 | Ω- element (pGGB002) | mVenus | linker NLS (pGGD007) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE1+2:mV-NLS | pSHRΔmAuxRE1+2 | Ω- element (pGGB002) | mVenus | linker NLS (pGGD007) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE1-2:mV-NLS | pSHRΔmAuxRE1-2 | Ω- element (pGGB002) | mVenus | linker NLS (pGGD007) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE2-2:mV-NLS | pSHRΔmAuxRE2-2 | Ω- element (pGGB002) | mVenus | linker NLS (pGGD007) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE1−2+2–2:mV-NLS | pSHRΔmAuxRE1−2+2–2 | Ω- element (pGGB002) | mVenus | linker NLS (pGGD007) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
Name of construct | Promoter | N-Tag | CDS | C-Tag | Terminator | Resistance |
---|---|---|---|---|---|---|
pSHR:FLUC | pSHR | Ω- element (pGGB002) | FLUC | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE1:FLUC | pSHRΔmAuxRE1 | Ω- element (pGGB002) | FLUC | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE2:FLUC | pSHRΔmAuxRE2 | Ω- element (pGGB002) | FLUC | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE1+2:FLUC | pSHRΔmAuxRE1+2 | Ω- element (pGGB002) | FLUC | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE1-2:FLUC | pSHRΔmAuxRE1-2 | Ω- element (pGGB002) | FLUC | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE2-2:FLUC | pSHRΔmAuxRE2-2 | Ω- element (pGGB002) | FLUC | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
pSHRΔmAuxRE1−2+2–2:FLUC | pSHRΔmAuxRE1−2+2–2 | Ω- element (pGGB002) | FLUC | d-dummy (pGGD002) | tUBQ10 (pGGE009) | BastaR (pGGF008) |
Lines | Reference |
---|---|
scr-4 | Fukaki et al., 1998 |
jkd-4 | Welch et al., 2007 |
scr-3 | Fukaki et al., 1998 |
shr-2 | Nakajima et al., 2001 |
scl23-2 | Lee et al., 2008 |
wus-7 | Graf et al., 2010 |
wus-am | From Jan lohmann |
mp-S319 | Schlereth et al., 2010 |
mp-B4149 | Weijers et al., 2005 |
lfy-12 | Huala and Sussex, 1992 |
clv3-9 | Hobe et al., 2003 |
cycd6;1 | GABI-Kat line (GK-368E07) Sozzani et al., 2010 |
Lines | Plant Resistance | Reference |
---|---|---|
pSHR:mV-NLS | Basta | This study |
pSHRΔmAuxRE1:mV-NLS | Basta | This study |
pSHRΔmAuxRE2:mV-NLS | Basta | This study |
pSHRΔmAuxRE1+2:mV-NLS | Basta | This study |
pSHRΔmAuxRE1-2:mV-NLS | Basta | This study |
pSHRΔmAuxRE2-2:mV-NLS | Basta | This study |
pSHRΔmAuxRE1−2+2–2:mV-NLS | Basta | This study |
pCLV3:SCL23-mVenus | Basta | This study |
pRPS5A:SCL23-mVenus | Basta | This study |
pUBIQ10:SCL23-mVenus | Basta | This study |
pUBIQ10:MP-GR | Basta | This study |
PlaCCI | Kanamycin | Desvoyes et al., 2020 |
pSHR:mScarlet-SHR | - | This study |
pSHR:YFP-SHR | Basta | Long et al., 2017 |
pSCR:SCR-RFP | hyg | Long et al., 2017 |
pSCR:SCR-YFP | basta | Long et al., 2017 |
pSHR:SHR-YFP | Basta | Long et al., 2017 |
pJKD:mRFP-YFP | norf | Long et al., 2017 |
pJKD:JKD-YFP | Basta | Long et al., 2017 |
pSCL23:SCL23-YFP | Kanamycin | Long et al., 2015a |
pSCL23:H2B-YFP | Kanamycin | Long et al., 2015a |
pCYCD6;1:GFP | Basta | Sozzani et al., 2010 |
pSCR:H2B-YFP | Kanamycin | Heidstra et al., 2004 |
pPIN1:PIN1-GFP | Kanamycin | Benková et al., 2003 |
pSHR:nTdTOMATO | - | Möller et al., 2017 |
pMP:MP-GFP | Kanamycin | Schlereth et al., 2010 |
pLFY:LFY-GFP | kanamycin | Wu et al., 2003 |
R2D2 | kanamycin | Liao et al., 2015 |
pDR5v2:3xYFP-N7 | Basta | Heisler et al., 2005 |
pWUS:3xVenus-NLS/pCLV3-mCherry-NLS | Kanamycin | Pfeiffer et al., 2016 |
pCYCD1,1-GFP | - | Forzani et al., 2014 |
pCYCD3,2-GFP | - | This study |
pCYCD3,1-GFP | - | This study |
pCYCD5,1-GFP | - | This study |
pCYCD7,1-GFP | - | This study |
pCYCD2,1-GFP | - | This study |
pCYCD3,3-GFP | - | Forzani et al., 2014 |
pCYCB1;1:CYCB1;1-GFP | Kanamycin | Ubeda-Tomás et al., 2009 |