Transcriptome profiling of tendon fibroblasts at the onset of embryonic muscle contraction reveals novel force-responsive genes

  1. Pavan K Nayak
  2. Arul Subramanian
  3. Thomas F Schilling  Is a corresponding author
  1. University of California, Irvine, United States

Abstract

Mechanical forces play a critical role in tendon development and function, influencing cell behavior through mechanotransduction signaling pathways and subsequent extracellular matrix (ECM) remodeling. Here we investigate the molecular mechanisms by which tenocytes in developing zebrafish embryos respond to muscle contraction forces during the onset of swimming and cranial muscle activity. Using genome-wide bulk RNA sequencing of FAC-sorted tenocytes we identify novel tenocyte markers and genes involved in tendon mechanotransduction. Embryonic tendons show dramatic changes in expression of matrix remodeling associated 5b (mxra5b), matrilin1 (matn1), and the transcription factor kruppel-like factor 2a (klf2a), as muscles start to contract. Using embryos paralyzed either by loss of muscle contractility or neuromuscular stimulation we confirm that muscle contractile forces influence the spatial and temporal expression patterns of all three genes. Quantification of these gene expression changes across tenocytes at multiple tendon entheses and myotendinous junctions reveals that their responses depend on force intensity, duration and tissue stiffness. These force-dependent feedback mechanisms in tendons, particularly in the ECM, have important implications for improved treatments of tendon injuries and atrophy.

Data availability

We have uploaded our datasets, software code etc to the GEO portal. We have received the GEO accession numbers for the datasets - GSE292682 and GSE292683All source data (quantification data) has been uploaded with the manuscript and referred to in the figure legends respectively.

The following data sets were generated

Article and author information

Author details

  1. Pavan K Nayak

    Department of Developmental and Cell Biology, University of California, Irvine, Irvine, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-4360-6729
  2. Arul Subramanian

    Department of Developmental and Cell Biology, University of California, Irvine, Irvine, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-8455-6804
  3. Thomas F Schilling

    Department of Developmental and Cell Biology, University of California, Irvine, Irvine, United States
    For correspondence
    tschilli@uci.edu
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1798-8695

Funding

National Science Foundation (MCB2028424)

  • Thomas F Schilling

National Institutes of Health (R01 DE13828)

  • Thomas F Schilling

National Institutes of Health (R01 DE30565)

  • Thomas F Schilling

National Institutes of Health (R01 AR67797)

  • Thomas F Schilling

National Science Foundation- Simons Center for Multiscale Cell Fate (594598)

  • Pavan K Nayak

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Ethics

Animal experimentation: This study was performed in strict accordance with the recommendations in the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health. All of the animals were handled according to approved institutional animal care and use committee (IACUC) protocols (#AUP-23-099) of the University of California Irvine. The protocol was approved by the UCI IACUC Committee and ULAR (University Laboratory Animal Welfare).

Copyright

© 2025, Nayak et al.

This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

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  1. Pavan K Nayak
  2. Arul Subramanian
  3. Thomas F Schilling
(2025)
Transcriptome profiling of tendon fibroblasts at the onset of embryonic muscle contraction reveals novel force-responsive genes
eLife 14:e105802.
https://doi.org/10.7554/eLife.105802

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https://doi.org/10.7554/eLife.105802

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