Comparative analysis of viral RNA signatures on different RIG-I-like receptors
- Institut Pasteur, France
- University of Texas Medical Branch, United States
- University of Reunion Island, France
Abstract
The RIG-I-like receptors (RLRs) play a major role in sensing RNA virus infection to initiate and modulate antiviral immunity. They interact with particular viral RNAs, most of them being still unknown. To decipher the viral RNA signature on RLRs during viral infection, we tagged RLRs (RIG-I, MDA5, LGP2) and applied tagged protein affinity purification followed by next-generation sequencing (NGS) of associated RNA molecules. Two viruses with negative- and positive-sense RNA genome were used: measles (MV) and chikungunya (CHIKV). NGS analysis revealed that distinct regions of MV genome were specifically recognized by distinct RLRs: RIG-I recognized defective interfering genomes, whereas MDA5 and LGP2 specifically bound MV nucleoprotein-coding region. During CHIKV infection, RIG-I associated specifically to the 3' untranslated region of viral genome. This study provides the first comparative view of the viral RNA ligands for RIG-I, MDA5 and LGP2 in the presence of infection.
Article and author information
Author details
Reviewing Editor
- Xuetao Cao, Zhejiang University School of Medicine, China
Version history
- Received: September 1, 2015
- Accepted: March 24, 2016
- Accepted Manuscript published: March 24, 2016 (version 1)
- Version of Record published: April 20, 2016 (version 2)
Copyright
© 2016, Sanchez David et al.
This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.
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Comparative analysis of viral RNA signatures on different RIG-I-like receptors
eLife 5:e11275.
https://doi.org/10.7554/eLife.11275
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