Rapid transporter regulation prevents substrate flow traffic jams in boron transport

  1. Naoyuki Sotta
  2. Susan Duncan
  3. Mayuki Tanaka
  4. Sato Takafumi
  5. Athanasius FM Marée  Is a corresponding author
  6. Toru Fujiwara  Is a corresponding author
  7. Verônica A. Grieneisen  Is a corresponding author
  1. The University of Tokyo, Japan
  2. John Innes Centre, United Kingdom
  3. University of Tokyo, Japan

Abstract

Nutrient uptake by roots often involves substrate-dependent regulated nutrient transporters. For robust uptake, the system requires a regulatory circuit within cells and a collective, coordinated behaviour across the tissue. A paradigm for such systems is boron uptake, known for its directional transport and homeostasis, as boron is essential for plant growth but toxic at high concentrations. In Arabidopsis thaliana Boron up- take occurs via diffusion facilitators (NIPs) and exporters (BORs), each presenting distinct polarity. Intriguingly, although boron soil concentrations are homogenous and stable, both transporters manifest strikingly swift boron-dependent regulation. Through mathematical modelling, we demonstrate that slower regulation of these transporters leads to physiologically detrimental oscillatory behaviour. Cells become periodically exposed to potentially cytotoxic boron levels, and nutrient throughput to the xylem becomes hampered. We conclude that, while maintaining homeostasis, swift transporter regulation within a polarised tissue context is critical to prevent intrinsic traffic-jam like behaviour of nutrient flow.

Data availability

The following data sets were generated

Article and author information

Author details

  1. Naoyuki Sotta

    Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-5558-5155
  2. Susan Duncan

    Department of Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-9581-1145
  3. Mayuki Tanaka

    Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo, Japan
    Competing interests
    The authors declare that no competing interests exist.
  4. Sato Takafumi

    Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo, Japan
    Competing interests
    The authors declare that no competing interests exist.
  5. Athanasius FM Marée

    Department of Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom
    For correspondence
    Stan.Maree@jic.ac.uk
    Competing interests
    The authors declare that no competing interests exist.
  6. Toru Fujiwara

    Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
    For correspondence
    atorufu@mail.ecc.u-tokyo.ac.jp
    Competing interests
    The authors declare that no competing interests exist.
  7. Verônica A. Grieneisen

    Department of Computational & Systems Biology, John Innes Centre, Norwich, United Kingdom
    For correspondence
    veronica.grieneisen@jic.ac.uk
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-6780-8301

Funding

Biotechnology and Biological Sciences Research Council (BB/J004553/1)

  • Athanasius FM Marée
  • Verônica A. Grieneisen

Japan Society for the Promotion of Science (25221202)

  • Toru Fujiwara

Engineering and Physical Sciences Research Council (BB/ L014130/1)

  • Susan Duncan

Japan Society for the Promotion of Science (15J11021)

  • Naoyuki Sotta

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2017, Sotta et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 2,357
    views
  • 446
    downloads
  • 15
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Naoyuki Sotta
  2. Susan Duncan
  3. Mayuki Tanaka
  4. Sato Takafumi
  5. Athanasius FM Marée
  6. Toru Fujiwara
  7. Verônica A. Grieneisen
(2017)
Rapid transporter regulation prevents substrate flow traffic jams in boron transport
eLife 6:e27038.
https://doi.org/10.7554/eLife.27038

Share this article

https://doi.org/10.7554/eLife.27038

Further reading

    1. Computational and Systems Biology
    2. Neuroscience
    Jian Qiu, Margaritis Voliotis ... Martin J Kelly
    Research Article

    Hypothalamic kisspeptin (Kiss1) neurons are vital for pubertal development and reproduction. Arcuate nucleus Kiss1 (Kiss1ARH) neurons are responsible for the pulsatile release of gonadotropin-releasing hormone (GnRH). In females, the behavior of Kiss1ARH neurons, expressing Kiss1, neurokinin B (NKB), and dynorphin (Dyn), varies throughout the ovarian cycle. Studies indicate that 17β-estradiol (E2) reduces peptide expression but increases Slc17a6 (Vglut2) mRNA and glutamate neurotransmission in these neurons, suggesting a shift from peptidergic to glutamatergic signaling. To investigate this shift, we combined transcriptomics, electrophysiology, and mathematical modeling. Our results demonstrate that E2 treatment upregulates the mRNA expression of voltage-activated calcium channels, elevating the whole-cell calcium current that contributes to high-frequency burst firing. Additionally, E2 treatment decreased the mRNA levels of canonical transient receptor potential (TPRC) 5 and G protein-coupled K+ (GIRK) channels. When Trpc5 channels in Kiss1ARH neurons were deleted using CRISPR/SaCas9, the slow excitatory postsynaptic potential was eliminated. Our data enabled us to formulate a biophysically realistic mathematical model of Kiss1ARH neurons, suggesting that E2 modifies ionic conductances in these neurons, enabling the transition from high-frequency synchronous firing through NKB-driven activation of TRPC5 channels to a short bursting mode facilitating glutamate release. In a low E2 milieu, synchronous firing of Kiss1ARH neurons drives pulsatile release of GnRH, while the transition to burst firing with high, preovulatory levels of E2 would facilitate the GnRH surge through its glutamatergic synaptic connection to preoptic Kiss1 neurons.

    1. Computational and Systems Biology
    David B Blumenthal, Marta Lucchetta ... Martin H Schaefer
    Research Article

    Degree distributions in protein-protein interaction (PPI) networks are believed to follow a power law (PL). However, technical and study bias affect the experimental procedures for detecting PPIs. For instance, cancer-associated proteins have received disproportional attention. Moreover, bait proteins in large-scale experiments tend to have many false-positive interaction partners. Studying the degree distributions of thousands of PPI networks of controlled provenance, we address the question if PL distributions in observed PPI networks could be explained by these biases alone. Our findings are supported by mathematical models and extensive simulations and indicate that study bias and technical bias suffice to produce the observed PL distribution. It is, hence, problematic to derive hypotheses about the topology of the true biological interactome from the PL distributions in observed PPI networks. Our study casts doubt on the use of the PL property of biological networks as a modeling assumption or quality criterion in network biology.