Extended low-resolution structure of a Leptospira antigen offers high bactericidal antibody accessibility amenable to vaccine design

Abstract

Pathogens rely on proteins embedded on their surface to perform tasks essential for host infection. These obligatory structures exposed to the host immune system provide important targets for rational vaccine design. Here, we use a systematically designed series of multi-domain constructs in combination with small angle X-ray scattering (SAXS) to determine the structure of the main immunoreactive region from a major antigen from Leptospira interrogans, LigB. An anti-LigB monoclonal antibody library exhibits cell binding and bactericidal activity with extensive domain coverage complementing the elongated architecture observed in the SAXS structure. Combining antigenic motifs in a single-domain chimeric immunoglobulin-like fold generated a vaccine that greatly enhances leptospiral protection over vaccination with single parent domains. Our study demonstrates how understanding an antigen's structure and antibody accessible surfaces can guide the design and engineering of improved recombinant antigen-based vaccines.

Data availability

The following previously published data sets were used

Article and author information

Author details

  1. Ching-Lin Hsieh

    Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, United States
    Competing interests
    The authors declare that no competing interests exist.
  2. Christopher P Ptak

    Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-2752-0367
  3. Andrew Tseng

    Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, United States
    Competing interests
    The authors declare that no competing interests exist.
  4. Igor Massahiro de Souza Suguiura

    Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, United States
    Competing interests
    The authors declare that no competing interests exist.
  5. Sean P McDonough

    Department of Biomedical Sciences, Cornell University, Ithaca, United States
    Competing interests
    The authors declare that no competing interests exist.
  6. Tepyuda Sritrakul

    Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, United States
    Competing interests
    The authors declare that no competing interests exist.
  7. Ting Li

    Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, United States
    Competing interests
    The authors declare that no competing interests exist.
  8. Yi-Pin Lin

    Division of Infectious Disease, New York State Department of Health, Albany, United States
    Competing interests
    The authors declare that no competing interests exist.
  9. Richard E Gillilan

    Cornell High Energy Synchrotron Source, Cornell University, Ithaca, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-7636-3188
  10. Robert Oswald

    Department of Molecular Medicine, Cornell University, Ithaca, United States
    For correspondence
    reo1@cornell.edu
    Competing interests
    The authors declare that no competing interests exist.
  11. Yung-Fu Chang

    Department of Population Medicine and Diagnostic Sciences, Cornell University, Ithaca, United States
    For correspondence
    yc42@cornell.edu
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-8902-3089

Funding

Center for Advanced Technology program (478-3400)

  • Yung-Fu Chang

Biotechnology Research and Development Corporation (478-9355)

  • Yung-Fu Chang

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Ethics

Animal experimentation: Animals were housed in isolation units approved by the Cornell University Institutional Animal Care and Use Committee (Protocol number: 2015-0133).

Copyright

© 2017, Hsieh et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 2,146
    views
  • 324
    downloads
  • 12
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Ching-Lin Hsieh
  2. Christopher P Ptak
  3. Andrew Tseng
  4. Igor Massahiro de Souza Suguiura
  5. Sean P McDonough
  6. Tepyuda Sritrakul
  7. Ting Li
  8. Yi-Pin Lin
  9. Richard E Gillilan
  10. Robert Oswald
  11. Yung-Fu Chang
(2017)
Extended low-resolution structure of a Leptospira antigen offers high bactericidal antibody accessibility amenable to vaccine design
eLife 6:e30051.
https://doi.org/10.7554/eLife.30051

Share this article

https://doi.org/10.7554/eLife.30051

Further reading

    1. Structural Biology and Molecular Biophysics
    Kingsley Y Wu, Ta I Hung, Chia-en A Chang
    Research Article

    PROteolysis TArgeting Chimeras (PROTACs) are small molecules that induce target protein degradation via the ubiquitin-proteasome system. PROTACs recruit the target protein and E3 ligase; a critical first step is forming a ternary complex. However, while the formation of a ternary complex is crucial, it may not always guarantee successful protein degradation. The dynamics of the PROTAC-induced degradation complex play a key role in ubiquitination and subsequent degradation. In this study, we computationally modelled protein complex structures and dynamics associated with a series of PROTACs featuring different linkers to investigate why these PROTACs, all of which formed ternary complexes with Cereblon (CRBN) E3 ligase and the target protein bromodomain-containing protein 4 (BRD4BD1), exhibited varying degrees of degradation potency. We constructed the degradation machinery complexes with Culling-Ring Ligase 4A (CRL4A) E3 ligase scaffolds. Through atomistic molecular dynamics simulations, we illustrated how PROTAC-dependent protein dynamics facilitating the arrangement of surface lysine residues of BRD4BD1 into the catalytic pocket of E2/ubiquitin cascade for ubiquitination. Despite featuring identical warheads in this PROTAC series, the linkers were found to affect the residue-interaction networks, and thus governing the essential motions of the entire degradation machine for ubiquitination. These findings offer a structural dynamic perspective on ligand-induced protein degradation, providing insights to guide future PROTAC design endeavors.

    1. Biochemistry and Chemical Biology
    2. Structural Biology and Molecular Biophysics
    Sasha L Evans, Bethany A Haynes ... Rivka L Isaacson
    Insight

    Nature has inspired the design of improved inhibitors for cancer-causing proteins.