(A) Schematic of the primary sympathetic superior cervical ganglia (SCG)-derived model of HSV latency. Reactivation was quantified based on Us11-GFP-positive neurons in presence of WAY-150168, which …
Quantification of GFP-positive neurons for Figure 1.
(A) Reactivation was induced by forskolin in the presence of JNK inhibitor SP600125 (20 μM). (B) Reactivation was induced by forskolin in the presence of the DLK inhibitor GNE-3511 (4 μM). In A and …
Quantification of GFP-positive neurons, RT-qPCR and western blot band densities for Figure 2.
(A) Titers of infectious virus detected from reactivating neurons induced with forskolin (n = 4). (B) Quantification of the relative viral genome copy number following forskolin-mediated …
Quantification of HSV titer, GFP-positive neurons and RT-qPCR for Figure 2—figure supplement 1.
(A) Latently infected cultures were reactivated with forskolin (60 μM) in the presence of the PKA inhibitor KT 5720 (3 µM) and the number of Us11-GFP-positive neurons quantified at 3 days …
Quantification of GFP-positive neurons and RT-qPCR for Figure 2—figure supplement 2.
(A) Quantification of the percentage of genome foci stained using click-chemistry that co-localize with H3K9me3/S10p. At least 15 fields of view with 1–8 genomes per field of view were blindly …
Quantification of genome co-localization and RT-qPCR for Figure 3.
(A) SCG neurons were treated with forskolin and immunofluorescence staining was carried out for H3K9me3/S10p, the DNA damage marker γH2AX and the neuronal marker beta III-tubulin. (B) Quantification …
Quantification of nuclear staining intensity and GFP-positive neurons Figure 3—figure supplement 1.
(A) Latently infected cultures were reactivated with forskolin in the presence of the voltage-gated sodium channel blocker tetrodotoxin (TTX; 1 µM) and the number of Us11-GFP-positive neurons …
Quantification of GFP-positive neurons, RT-qPCR and nuclear staining intensity for Figure 4.
(A and B) Latently infected cultures were reactivated with forskolin in the presence of the HCN channel inhibitors ivabradine (20 µM; A) and CsCl (3 mM; B). Latently infected cultures were …
Quantification of GFP-positive neurons and RT-qPCR for Figure 4—figure supplement 1.
(A) Latently infected SCG cultures were treated with forskolin or KCl (55 mM) for the indicated times followed by wash-out. Reactivation was quantified by number of Us11-GFP-positive neurons at 3 …
Quantification of GFP-positive neurons for Figure 5.
(A) Adult P36 SCG neurons were treated with IL-1β (30 ng/mL) for 15 hr and stained for H3K9me3/S10p, γH2AX and beta II-tubulin to mark neurons. (B and C) Quantification of the intensity of …
Quantification of nuclear staining intensity and ratiometric calcium imaging for Figure 6.
Quantification of the nuclear staining intensity in P36 sympathetic neurons for H3K9me3/S10 (A) and γH2AX (B) following treatment with IL-1β (30 ng/mL) from 150 nuclei from two independent …
Quantification of nuclear staining intensity for Figure 6—figure supplement 1.
(A) Quantification of Us11-GFP expressing neurons following addition of IL-1β to latently infected cultures of mature SCG neurons. (B) Numbers of Us11-GFP-positive neurons following addition of …
Quantification of GFP-positive neurons for Figure 7.
Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Strain, strain background (Mus musculus, M/F) | CD1 | Charles River | Crl:CD1(ICR) | |
Strain, strain background (Human herpesvirus 1) | HSV Us11-GFP | I gift from Ian Mohr, NYU. PMID:12915535 | ||
Strain, strain background (Human herpesvirus 1) | HSV-1 17syn+ | A gift from Roger Everett, MRC Virology Unit Glasgow | ||
Cell line (Homo sapiens) | 293LTV | Cell Biolabs | Cat # LTV-100 RRID:CVCL_JZ09 | |
Cell line (Cercopithecus aethiops) | Vero | ATCC | Cat # CCCL-81 RRID:CVCL_0059 | |
Recombinant DNA reagent | pCMV-VSV-G | A gift from Bob Weinberg/Addgene PMID:12649500 | Cat # 8454 RRID:Addgene_8454 | |
Recombinant DNA reagent | psPax2 | A gift from Didier Trono/Addgene | Cat # 12260 RRID:Addgene_12260 | |
Antibody | Anti-phospho-Akt (S473) (Rabbit monoclonal) | Cell Signalling Technologies | Cat # 4060 RRID:AB_2315049 | WB (1:500) |
Antibody | Anti-Akt (pan) (Rabbit monoclonal) | Cell Signalling Technologies | Cat # C67E7 RRID:AB_915783 | WB (1:1000) |
Antibody | Anti-phopsho-c-Jun (Rabbit monoclonal) | Cell Signalling Technologies | Cat # 3270 RRID:AB_2129575 | WB (1:500) |
Antibody | Anti-DLK/MAP3K12 (Rabbit polyclonal) | Thermo Fisher | PA5-32173 RRID:AB_2549646 | WB (1:500) |
Antibody | Anti-a-tubulin (Mouse monoclonal) | Millipore sigma | Cat # T9026 RRID:AB_477593 | WB (1:2500) |
Antibody | Anti-Rabbit IgG Antibody (H+L), Peroxidase (Goat polyclonal) | Vector Labs | Cat # PI-1000 RRID:AB_2336198 | WB (1:10000) |
Antibody | Anti-mouse IgG Antibody (H+L), Peroxidase (Horse polyclonal) | Vector Labs | Cat # PI-2000 RRID:AB_2336177 | WB (1:10000) |
Antibody | Anti- H3K9me3S10P (Rabbit polyclonal) | Abcam | Cat # Ab5819 RRID:AB_305135 | IF (1:250) |
Antibody | Anti-Beta-III Tubulin (Chicken polyclonal) | Millipore Sigma | Cat # AB9354 RRID:AB_570918 | IF (1:1000) |
Antibody | Anti-γH2A.X (Mouse monoclonal) | Cell Signalling Technologies | Cat # 80312 RRID:AB_2799949 | IF (1:100) |
Antibody | Anti-c-Fos (Rabbit polyclonal) | Novus | Cat # NB110-75039 RRID:AB_1048550 | IF (1:125) |
Antibody | F(ab’)2 Anti-Mouse IgG (H+L) Alexa Fluor 647, (Goat polyclonal) | Thermo Fisher | Cat # A21237 RRID:AB_2535806 | IF (1:1000) |
Antibody | F(ab’)2 Anti-Rabbit IgG (H+L) Alexa Fluor 555 (Goat polyclonal) | Thermo Fisher | Cat # A21425 RRID:AB_2535846 | IF (1:1000) |
Antibody | Anti-Chicken IgY (H+L) Alexa Fluor 647 (Goat pAb) | Abcam | Cat # Ab150175 RRID:AB_2732800 | IF (1:1000) |
Antibody | Anti-Chicken IgY (H+L) Alexa Fluor 488 (Goat polyclonal) | Abcam | Cat # Ab150173 RRID:AB_2827653 | IF (1:1000) |
Antibody | F(ab’)2 Anti-Rabbit IgG (H+L) Alexa Fluor 488 (Goat polyclonal) | Thermo Fisher | Cat # A-11070 RRID:AB_2534114 | IF (1:1000) |
Antibody | Anti-Mouse IL-1R (Goat polyclonal) | Leinco Technologies | Cat # I-736 RRID:AB_2830857 | Blocking (2 ug/mL) |
Sequence-based reagent | mGAP F | PMID:19515781 | PCR primers | CATGGCCTTCCGTGTGTTCCTA |
Sequence-based reagent | mGAP R | PMID:19515781 | PCR primers | GCGGCACGTCAGATCCA |
Sequence-based reagent | ICP27 F | PMID:21285374 | PCR primers | GCATCCTTCGTGTTTGTCATTCTG |
Sequence-based reagent | ICP27 R | PMID:21285374 | PCR primers | GCATCTTCTCTCCGACCCCG |
Sequence-based reagent | ICP8 F | PMID:23322639 | PCR primers | GGAGGTGCACCGCATACC |
Sequence-based reagent | ICP8 R | PMID:23322639 | PCR primers | GGCTTAAATCCGGCATGAC |
Sequence-based reagent | ICP4 F | This paper | PCR primers | TGCTGCTGCTGTCCACGC |
Sequence-based reagent | ICP4 R | This paper | PCR primers | CGGTGTTGACCACGATGAGCC |
Sequence-based reagent | UL30 F | PMID:22383875 | PCR primers | CGCGCTTGGCGGGTATTAACAT |
Sequence-based reagent | UL30 R | PMID:22383875 | PCR primers | TGGGTGTCCGGCAGAATAAAGC |
Sequence-based reagent | UL48 F | This paper | PCR primers | TGCTCGCGAATGTGGTTTAG |
Sequence-based reagent | UL48 R | This paper | PCR primers | CTGTTCCAGCCCTTGATGTT |
Sequence-based reagent | gC F | This paper | PCR primers | CAGTTTGTCTGGTTCGAGGAC |
Sequence-based reagent | gC R | This paper | PCR primers | ACGGTAGAGACTGTGGTGAA |
Sequence-based reagent | shRNA: DLK-1 | Broad Institute: Genetic Perturbation Platform/Millipore Sigma | TRCN0000022573 | |
Sequence-based reagent | shRNA: DLK-2 | Broad Institute: Genetic Perturbation Platform/Millipore Sigma | TRCN0000022572 | |
Sequence-based reagent | shRNA: non-targeting control | PMID:16873256 | ||
Commercial assay or kit | Quick-RNA Miniprep | Zymo Research | R1054 | |
Commercial assay or kit | SuperScript IV First-Strand Synthesis System | ThermoFisher | 18091050 | |
Commercial assay or kit | SYBR Green PCR Master Mix | ThermoFisher | 4309155 | |
Chemical compound, drug | Acycloguanosine | Millipore Sigma | A4669 | 10 µM, 50 µM |
Chemical compound, drug | FUDR | Millipore Sigma | F-0503 | 20 µM |
Chemical compound, drug | Uridine | Millipore Sigma | U-3003 | 20 µM |
Chemical compound, drug | SP600125 | Millipore Sigma | S5567 | 20 µM |
Chemical compound, drug | GNE-3511 | Millipore Sigma | 533168 | 4 µM |
Chemical compound, drug | GSK-J4 | Millipore Sigma | SML0701 | 2 µM |
Chemical compound, drug | L-Glutamic Acid | Millipore Sigma | G5638 | 3.7 µg/mL |
Chemical compound, drug | Forskolin | Tocris | 1099 | 60 µM |
Chemical compound, drug | LY 294002 | Tocris | 1130 | 20 µM |
Chemical compound, drug | 666–15 | Tocris | 5661 | 2 µM |
Chemical compound, drug | SQ 22,536 | Tocris | 1435 | 50 µM |
Chemical compound, drug | KT 5720 | Tocris | 1288 | 3 µM |
Chemical compound, drug | TEA | Tocris | 3068 | 10 mM |
Chemical compound, drug | CsCl | Tocris | 4739 | 3 mM |
Chemical compound, drug | OG-L002 | Tocris | 6244 | 30 µM |
Chemical compound, drug | S2101 | Tocris | 5714 | 20 µM |
Chemical compound, drug | Tetrodotoxin | Tocris | 1069 | 1 µM |
Chemical compound, drug | ESI-09 | Tocris | 4773 | 10 µM |
Chemical compound, drug | ZD 7288 | Cayman | 15228 | 20 µM |
Chemical compound, drug | 8-bromo-cyclic AMP | Cayman | 14431 | 125 µM |
Chemical compound, drug | NGF 2.5S | Alomone Labs | N-100 | 50 ng/mL |
Chemical compound, drug | Primocin | Invivogen | ant-pm-1 | 100 µg/mL |
Chemical compound, drug | Aphidicolin | AG Scientific | A-1026 | 3.3 µg/mL |
Chemical compound, drug | IL-1β | Shenendoah Bio. | 100–167 | 30 ng/mL |
Chemical compound, drug | WAY-150138 | Pfizer, gift from Lynn Enquist and Jay Brown. | NA | 10 µg/mL |
Chemical compound, drug | Fura-2 AM | Thermo Fisher | F1221 | 5 µM |
Other | Hoescht Stain | Thermo | 62249 | 2 µM |
Table 1.
Cell Body Score for Neuronal Health and Degeneration IndexScoring system used to determine neuronal health based on morphology of the soma following treatment with compounds used in this study. Table 2. Axon Score for Neuronal Health and Degeneration IndexScoring system used to determine neuronal health based on morphology of the axons following treatment with compounds used in this study.