Pathway specific effects of ADSL deficiency on neurodevelopment

  1. Ilaria Dutto
  2. Julian Gerhards
  3. Antonio Herrera
  4. Olga Souckova
  5. Václava Škopová
  6. Jordann Smak
  7. Alexandra Junza
  8. Oscar Yanes
  9. Cedric Boeckx Prof
  10. Martin D Burkhalter
  11. Marie Zikánová
  12. Sebastian Pons
  13. Melanie Philipp
  14. Jens Lüders
  15. Travis H Stracker  Is a corresponding author
  1. Institute for Research in Biomedicine, Spain
  2. University of Tubingen, Germany
  3. Instituto de Biología Molecular de Barcelona, Spain
  4. Charles University, Czech Republic
  5. National Cancer Institute, United States
  6. Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders, Spain
  7. University of Barcelona, Spain
  8. University of Tübingen, Germany

Abstract

Adenylosuccinate Lyase (ADSL) functions in de novo purine biosynthesis (DNPS) and the purine nucleotide cycle. ADSL deficiency (ADSLD) causes numerous neurodevelopmental pathologies, including microcephaly and autism spectrum disorder. ADSLD patients have normal serum purine nucleotide levels but exhibit accumulation of dephosphorylated ADSL substrates, S-Ado and SAICAr, the latter being implicated in neurotoxic effects through unknown mechanisms. We examined the phenotypic effects of ADSL depletion in human cells and their relation to phenotypic outcomes. Using specific interventions to compensate for reduced purine levels or modulate SAICAr accumulation, we found that diminished AMP levels resulted in increased DNA damage signaling and cell cycle delays, while primary ciliogenesis was impaired specifically by loss of ADSL or administration of SAICAr. ADSL deficient chicken and zebrafish embryos displayed impaired neurogenesis and microcephaly. Neuroprogenitor attrition in zebrafish embryos was rescued by pharmacological inhibition of DNPS, but not increased nucleotide concentration. Zebrafish also displayed phenotypes commonly linked to ciliopathies. Our results suggest that both reduced purine levels and impaired DNPS contribute to neurodevelopmental pathology in ADSLD and that defective ciliogenesis may influence the ADSLD phenotypic spectrum.

Data availability

Most data generated or analysed during this study are included in the manuscript and supporting source data files. Additional source data is available via Figshare, https://doi.org/10.25452/figshare.plus.c.5793614

The following data sets were generated

Article and author information

Author details

  1. Ilaria Dutto

    Institute for Research in Biomedicine, Barcelona, Spain
    Competing interests
    No competing interests declared.
  2. Julian Gerhards

    Department of Experimental and Clinical Pharmacology and Pharmacogenomics, University of Tubingen, Tubingen, Germany
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-7005-1618
  3. Antonio Herrera

    Department of Cell Biology, Instituto de Biología Molecular de Barcelona, Barcelona, Spain
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-6248-1001
  4. Olga Souckova

    Department of Paediatrics and Inherited Metabolic Disorders, Charles University, Prague, Czech Republic
    Competing interests
    No competing interests declared.
  5. Václava Škopová

    Department of Paediatrics and Inherited Metabolic Disorders, Charles University, Prague, Czech Republic
    Competing interests
    No competing interests declared.
  6. Jordann Smak

    Center for Cancer Research, Radiation Oncology Branch, National Cancer Institute, Bethesda, United States
    Competing interests
    No competing interests declared.
  7. Alexandra Junza

    Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders, Madrid, Spain
    Competing interests
    No competing interests declared.
  8. Oscar Yanes

    Spanish Biomedical Research Center in Diabetes and Associated Metabolic Disorders, Madrid, Spain
    Competing interests
    No competing interests declared.
  9. Cedric Boeckx Prof

    Institute of Complex Systems, University of Barcelona, Barcelona, Spain
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-8882-9718
  10. Martin D Burkhalter

    Department of Experimental and Clinical Pharmacology and Pharmacogenomics, University of Tübingen, Tübingen, Germany
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-8646-3131
  11. Marie Zikánová

    Department of Paediatrics and Inherited Metabolic Disorders, Charles University, Prague, Czech Republic
    Competing interests
    No competing interests declared.
  12. Sebastian Pons

    Department of Cell Biology, Instituto de Biología Molecular de Barcelona, Barcelona, Spain
    Competing interests
    No competing interests declared.
  13. Melanie Philipp

    Department of Experimental and Clinical Pharmacology and Pharmacogenomics, University of Tubingen, Tubingen, Germany
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-2714-965X
  14. Jens Lüders

    Institute for Research in Biomedicine, Barcelona, Spain
    Competing interests
    Jens Lüders, Reviewing editor, eLife.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-9018-7977
  15. Travis H Stracker

    Center for Cancer Research, Radiation Oncology Branch, National Cancer Institute, Bethesda, United States
    For correspondence
    travis.stracker@nih.gov
    Competing interests
    No competing interests declared.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-8650-2081

Funding

H2020 Marie Skłodowska-Curie Actions (754510)

  • Ilaria Dutto

Ministerio de Ciencia, Innovación y Universidades (PGC2018-099562-B-I00)

  • Jens Lüders

Ministerio de Ciencia, Innovación y Universidades (PGC2018-095616-B-I00)

  • Travis H Stracker

Deutsche Forschungsgemeinschaft (DFG PH144/4-1)

  • Melanie Philipp

Deutsche Forschungsgemeinschaft (PH144/6-1)

  • Melanie Philipp

Agència de Gestió d'Ajuts Universitaris i de Recerca (2017 SGR)

  • Jens Lüders
  • Travis H Stracker

Charles University (PROGRES Q26/LF1)

  • Olga Souckova
  • Václava Škopová
  • Marie Zikánová

Ministry of Science, Innovation and Universities (BFU2017-83562-P)

  • Sebastian Pons

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

Metrics

  • 1,699
    views
  • 250
    downloads
  • 11
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Ilaria Dutto
  2. Julian Gerhards
  3. Antonio Herrera
  4. Olga Souckova
  5. Václava Škopová
  6. Jordann Smak
  7. Alexandra Junza
  8. Oscar Yanes
  9. Cedric Boeckx Prof
  10. Martin D Burkhalter
  11. Marie Zikánová
  12. Sebastian Pons
  13. Melanie Philipp
  14. Jens Lüders
  15. Travis H Stracker
(2022)
Pathway specific effects of ADSL deficiency on neurodevelopment
eLife 11:e70518.
https://doi.org/10.7554/eLife.70518

Share this article

https://doi.org/10.7554/eLife.70518

Further reading

    1. Cell Biology
    2. Chromosomes and Gene Expression
    Bethany M Bartlett, Yatendra Kumar ... Wendy A Bickmore
    Research Article Updated

    During oncogene-induced senescence there are striking changes in the organisation of heterochromatin in the nucleus. This is accompanied by activation of a pro-inflammatory gene expression programme – the senescence-associated secretory phenotype (SASP) – driven by transcription factors such as NF-κB. The relationship between heterochromatin re-organisation and the SASP has been unclear. Here, we show that TPR, a protein of the nuclear pore complex basket required for heterochromatin re-organisation during senescence, is also required for the very early activation of NF-κB signalling during the stress-response phase of oncogene-induced senescence. This is prior to activation of the SASP and occurs without affecting NF-κB nuclear import. We show that TPR is required for the activation of innate immune signalling at these early stages of senescence and we link this to the formation of heterochromatin-enriched cytoplasmic chromatin fragments thought to bleb off from the nuclear periphery. We show that HMGA1 is also required for cytoplasmic chromatin fragment formation. Together these data suggest that re-organisation of heterochromatin is involved in altered structural integrity of the nuclear periphery during senescence, and that this can lead to activation of cytoplasmic nucleic acid sensing, NF-κB signalling, and activation of the SASP.

    1. Cell Biology
    John Yong, Jacqueline E Villalta ... Calvin H Jan
    Research Article

    Protein aggregation increases during aging and is a pathological hallmark of many age-related diseases. Protein homeostasis (proteostasis) depends on a core network of factors directly influencing protein production, folding, trafficking, and degradation. Cellular proteostasis also depends on the overall composition of the proteome and numerous environmental variables. Modulating this cellular proteostasis state can influence the stability of multiple endogenous proteins, yet the factors contributing to this state remain incompletely characterized. Here, we performed genome-wide CRISPRi screens to elucidate the modulators of proteostasis state in mammalian cells, using a fluorescent dye to monitor endogenous protein aggregation. These screens identified known components of the proteostasis network and uncovered a novel link between protein and lipid homeostasis. Increasing lipid uptake and/or disrupting lipid metabolism promotes the accumulation of sphingomyelins and cholesterol esters and drives the formation of detergent-insoluble protein aggregates at the lysosome. Proteome profiling of lysosomes revealed ESCRT accumulation, suggesting disruption of ESCRT disassembly, lysosomal membrane repair, and microautophagy. Lipid dysregulation leads to lysosomal membrane permeabilization but does not otherwise impact fundamental aspects of lysosomal and proteasomal functions. Together, these results demonstrate that lipid dysregulation disrupts ESCRT function and impairs proteostasis.