Strain, strain background (Mus musculus; male) | BKS(D)-Leprdb/JOrlRj, Leprdb/db diabetic mice | Janvier Labs | RRID:MGI:6293869 | |
Strain, strain background (Mus musculus; male) | C57BL/6JRj Mouse | Janvier Labs | RRID:MGI:5751862 | |
Strain, strain background (Mus musculus; male) | Egln1+/- and wild-type mice | Own colony | PMID:19217150Mazzone et al., 2009 | |
Cell line (Mus musculus) | mIMCD-3 cell line | ATCC | Cat#:CRL-2123;RRID:CVCL_0429 | |
Transfected construct (M. musculus) | siRNA to mouse VHL | Qiagen | Gene Solution siRNA (Cat#: 1027416) | Target sequence: TCCGAGATTGATCTACACATA |
Transfected construct (M. musculus) | AllStars Negative Control siRNA | Qiagen | Cat#: 1027280 | |
Antibody | anti-HIF-1alpha (Rabbit polyclonal) | GeneTex | Cat#: GTX127309; RRID:AB_2616089 | ICC(1:200)IHC(1:100) |
Antibody | anti-KIM-1 (Rabbit polyclonal) | Novus Biologicals | Cat#:NBP1-76701;RRID:AB_11037459 | IHC(1:50)WB(1:500) |
Antibody | Goat anti-Rabbit Secondary Antibody, Alexa Fluor 594 | Thermo Fisher Scientific | Cat#:A-11037;RRID:AB_2534095 | ICC (1:500)IHC (1:500) |
Antibody | Goat anti-Rabbit Secondary Antibody, Alexa Fluor 488 | Thermo Fisher Scientific | Cat#:A-11008;RRID:AB_143165 | IHC (1:500)WB (1:500) |
Antibody | anti-HIF-1alpha (Rabbit polyclonal) | Novus Biologicals | Cat#:NB100-479;RRID:AB_10000633 | WB: 1:500 |
Antibody | anti-Histone H3 (Rabbit polyclonal) | Abcam | Cat#: ab1791;RRID:AB_302613 | WB: 1:5,000 |
Antibody | anti-α-tubulin (mouse monoclonal) | Abnova | Cat#:MAB11106; RRID:AB_2888691 | WB:1:1,000 |
Antibody | IRDye 800 goat anti-rabbit Secondary Antibody | LI_COR Biosciences | Cat#:925–32211; RRID:AB_2651127 | WB:1:20,000 |
Antibody | IRDye 680 goat anti-mouse Secondary Antibody | LI_COR Biosciences | Cat#:925–68070; RRID:AB_2651128 | WB:1:20,000 |
Recombinant DNA reagent | pCMV3-FLAG-PDK1 | Sino Biological Inc | Cat#: HG12312-NF | Plasmid encoding FLAG-tagged human PDK1 |
Recombinant DNA reagent | pCMV3-GFP-FLAG-PDK1 | This paper | | Plasmid encoding GFP-fused FLAG-tagged human PDK1 |
Sequence-based reagent | Mouse PDK1_F | This paper | PCR primers | AGTCCGTTGTCCTTATGAG |
Sequence-based reagent | Mouse PDK1_R | This paper | PCR primers | CAGAACATCCTTGCCCAG |
Sequence-based reagent | Mouse BNIP3_F | This paper | PCR primers | AACAGCACTCTGTCTGAGG |
Sequence-based reagent | Mouse BNIP3_R | This paper | PCR primers | CCGACTTGACCAATCCCA |
Sequence-based reagent | Mouse PGK1_F | This paper | PCR primers | AGTCCGTTGTCCTTATGAG |
Sequence-based reagent | Mouse PGK1_R | This paper | PCR primers | CAGAACATCCTTGCCCAG |
Sequence-based reagent | MouseSDF-1alpha_F | This paper | PCR primers | GAGAGCCACATCGCCAGAG |
Sequence-based reagent | MouseSDF-1alpha_R | This paper | PCR primers | TTTCGGGTCAATGCACACTTG |
Sequence-based reagent | MouseEgln1_F | This paper | PCR primers | GGGCAACTACAGGATAAACGG |
Sequence-based reagent | Mouse Egln1_R | This paper | PCR primers | CTCCACTTACCTTGGCGT |
Sequence-based reagent | Mouse GLUT3_F | This paper | PCR primers | TCATCTCCATTGTCCTCCAG |
Sequence-based reagent | Mouse GLUT3_R | This paper | PCR primers | CCAGGAACAGAGAAACTACAG |
Sequence-based reagent | MouseACTB_F | This paper | PCR primers | AAGATCAAGATCATTGCTCCTC |
Sequence-based reagent | MouseACTB_R | This paper | PCR primers | GGACTCATCGTACTCCTG |
Sequence-based reagent | MouseHMBS_F | This paper | PCR primers | CCTGTTCAGCAAGAAGATGGTC |
Sequence-based reagent | MouseHMBS_R | This paper | PCR primers | AGAAGTAGGCAGTGGAGTGG |
Sequence-based reagent | MouseVHL_F | This paper | PCR primers | CATCACATTGCCAGTGTATACCC |
Sequence-based reagent | MouseVHL_R | This paper | PCR primers | GCTGTATGTCCTTCCGCAC |
Commercial assay or kit | MycoAlert PLUS mycoplasma detection kit | LONZA | Cat#:LT07-218 | |
Commercial assay or kit | Dual-Luciferase Reporter Assay System | Promega | Cat#: E1960 | |
Commercial assay or kit | Annexin V-FITC / 7-AAD kit | Beckman Coulter | Cat#: IM3614 | |
Commercial assay or kit | Caspase-Glo 3/7 assay kit | Promega | Cat#: G8091 | |
Commercial assay or kit | Quant-iT dsDNA High-Sensitivity Assay Kit | Thermo Fisher Scientific | Cat#: Q33120 | |
Commercial assay or kit | Lipofectamine RNAiMAX Transfection Reagent | Thermo Fisher Scientific | Cat#: 13778075 | |
Commercial assay or kit | MitoSOX Red Mitochondrial Superoxide Indicator, for live-cell imaging | Thermo Fisher Scientific | Cat#:M36008 | |
Commercial assay or kit | ProLong Gold Antifade Mountant with DAPI | Thermo Fisher Scientific | Cat#:P36935 | |
Commercial assay or kit | DAPI | Thermo Fisher Scientific | Cat#:D1306 | |
Commercial assay or kit | Hypoxyprobe–1 Omni Kit | Hypoxyprobe, Inc | Cat#:HP1-XXX | |
Commercial assay or kit | Tyramide Superboost kit | Thermo Fisher Scientific | Cat#:B40943 | |
Commercial assay or kit | OxiSelectTM HNE Adduct Competitive ELISA kit | Cell Biolabs | STA838 | |
Commercial assay or kit | DC Protein Assay | BIO-RAD | Cat#:5000111 | |
Commercial assay or kit | miRNeasy Mini kit | Qiagen | Cat#:217,004 | |
Commercial assay or kit | High-Capacity cDNA Reverse Transcription Kit | Thermo Fisher Scientific | Cat#:4368814 | |
Commercial assay or kit | SYBR Green Master Mix | Thermo Fisher Scientific | Cat#:4367659 | |
Commercial assay or kit | Bradford Protein Assay | BIO-RAD | Cat#:5000001 | |
Commercial assay or kit | In Situ Cell Death Detection Kit | Roche | Cat#:11684817910RRID:AB_2861314 | |
Commercial assay or kit | DCA Microalbumin/Creatinine Urine Test | Siemens Healthcare GmbH | Cat#:01443699 | |
Chemical compound, drug | CPH (1-hydroxy-3-carboxy-pyrrolidine) | Noxygen Science Transfer & Diagnostics GmbH | Cat#:NOX-01.1–50 mg | |
Chemical compound, drug | EPR-grade Krebs HEPES buffer | Noxygen Science Transfer & Diagnostics GmbH | Cat#:NOX-7.6.1–500 ml | |
Chemical compound, drug | Deferoxamine | Noxygen Science Transfer & Diagnostics GmbH | Cat#:NOX-09.1–100 mg | |
Chemical compound, drug | DETC (diethyldithiocarbamate) | Noxygen Science Transfer & Diagnostics GmbH | Cat#:NOX-10.1–1 g | |
Chemical compound, drug | DMOG (Dimethyloxalylglycine) | Frontier Specialty Chemicals | Cat#:D1070 | |
Chemical compound, drug | cOmplete, Mini, EDTA-free Protease Inhibitor Cocktail | Roche | Cat#: 11836170001 | |
Chemical compound, drug | Formaldehyde solution | Sigma | Cat#: F8775 | |
Chemical compound, drug | Streptozotocin | Sigma | Cat#: S0130 | |
Chemical compound, drug | Sudan Black B | Sigma | Cat#:199,664 | |
Software, algorithm | FlowJo | FlowJo | RRID:SCR_008520 | |
Software, algorithm | Image-Pro Premier v9.2 | Media Cybernetics | | |
Software, algorithm | ImageJ | ImageJ | RRID:SCR_003070 | |
Software, algorithm | GraphPad Prism | GraphPad Prism | RRID:SCR_002798 | |
Other | Dulbecco’s Modified Eagle’s Medium | Thermo Fisher Scientific | 31885–023 | |