Viral Latency: Down but not out
A new study in monkeys suggests that treating HIV infection early with antiretroviral therapy reduces the number of latent viruses, but has little impact on viral reactivation when treatment stops.
- University of Utah, United States
When you imagine viruses hiding from your immune system, you may think of the herpes simplex virus, responsible for cold sores and genital herpes, or the varicella-zoster virus, which causes shingles. These viruses can persist for decades in a hibernation-like state known as latency and avoid detection by our immune system (Kennedy et al., 2015). Latent viruses can sometimes awaken and begin replicating once more, causing symptoms and spreading infection (Lieberman, 2016).
The human immunodeficiency virus (HIV) is similarly a master escape artist. It forms a latent reservoir early in infection, allowing the virus to evade the immune system and to survive long-term. People living with HIV take daily medications known as combination antiretroviral therapy (or ART) to prevent the virus from replicating. However, ART is not a cure, as it does not target viruses that are already latent. These drugs are therefore given for the lifetime of an individual: stopping treatment, even for a few weeks, will allow the latent viruses to reactivate and rekindle active infection. People with HIV can expect to have long, healthy lives due to ART, but latent viruses will always be present in their body.
Finding a cure for HIV requires being able to eliminate or control the latent viral reservoir. However, some key questions still need to be addressed to achieve this goal. How, when and where does HIV establish latency? What is the size of the latent reservoir, and the best way to measure it? What triggers latent viruses to reactivate? Now, in eLife, Miles Davenport, Brandon Keele and colleagues from the University of New South Wales and the Frederick National Laboratory for Cancer Research – including Mykola Pinkevych as first author – report when the latent reservoir is established in a non-human primate model of HIV and how much of the reservoir can be reactivated (Pinkevych et al., 2019).
In this study, the team infected rhesus macaques with simian immunodeficiency virus (SIV), a precursor virus which is endemic in African monkeys and genetically similar to HIV (Williams and Burdo, 2009). At some point during the 20th century, SIV jumped from non-human primates into humans; this cross-species transmission event, coupled with rapid evolution, allowed the virus to efficiently spread in people and to create the ongoing HIV pandemic (Keele et al., 2006).
Pinkevych et al. began by infecting rhesus macaques with an engineered SIV containing over 10,000 unique randomized sequences of DNA; once sequenced, these ‘barcodes’ allow individual viruses to be identified (Fennessey et al., 2017). The monkeys were then treated with antiretroviral therapy 4, 10, or 27 days after infection. These intervals simulate acute (4 days), early (10 days), or late intervention (27 days) with ART in humans. The drugs were given for approximately a year, and the virus was completely suppressed in all animals. The treatment was then stopped and the latent virus was allowed to reactivate. Using genetic sequencing and mathematical modeling, the team determined the size of the latent reservoir of SIV and how it would reactivate.
In the monkeys, starting the treatment four days after infection did not block the formation of the latent reservoir, but did reduce its size by approximately 100-fold compared to later ART initiation. Similarly, people who begin ART within days of acquiring HIV have an extremely small reservoir compared to those who start treatment later (Luzuriaga et al., 2015; Henrich et al., 2017). Despite these large differences in overall reservoir size, once ART was stopped the latent viruses reactivated at similar rates in acute, early, and late-treated animals (Figure 1). Pinkevych et al. therefore conclude that the majority of viruses which have the potential to reactivate are establishing latency early after infection.
Figure 1
The timing of antiretroviral therapy influences the size of the latent reservoir.
Without treatment, cells infected with actively replicating virus (productively infected cells; shown in green) create infectious viruses. A minority of infected cells contain viruses that can persist indefinitely as a latent reservoir (latently infected cells; shown in gray), and these viruses can potentially be reactivated at a later date. Treatment administered during the acute phase of infection (that is, within days or weeks of primary infection; yellow curve) results in a smaller latent reservoir than when treatment is initiated early (within six months of infection, light blue) or during chronic infection (more than 6 months since infection, violet). If treatment is stopped (dashed line), the virus reactivates from these reservoirs at similar levels to rekindle active infection and re-seed the latent reservoir.
To explore why the timing of the treatment did not seem to influence the rate of reactivation, the team measured the level of genetic mutations in the latent viruses. If viruses accumulate more damaging mutations the longer they are actively replicating in the body, this would suggest animals receiving delayed ART could carry a larger proportion of latent viruses that are defective and cannot reawaken. However, the team found that the majority of viruses (more than 80%) were genetically intact across all animals, regardless of when treatment started. This is quite different to what happens with HIV infection in humans, where most of the latent viruses contain major genetic mutations and deletions, leaving just a small fraction (between 2% and 11%) that are capable of reactivation (Ho et al., 2013; Bruner et al., 2019).
A recent study, which evaluated the dynamics of the HIV reservoir in people on stable ART, identified another discrepancy between this SIV model and HIV latency in humans. Despite ongoing ART, latent HIV can sometimes spontaneously reactivate and the viruses become detectable in the blood for a short while. In humans, these viral ‘blips’ are phylogenetically linked to a viral reservoir established not just at initial infection, but across years of untreated infection (Jones et al., 2018). The reasons underlying these differences are not well understood and represent important areas for ongoing research.
Despite differences between non-human primate models and human HIV infection, the work by Pinkevych et al. confirms that viral latency is established extremely early after infection. These results indicate that antiretroviral therapy should be started as soon as possible to control HIV infection and reduce latent reservoir size. Much is still unknown about how HIV latency is established and maintained, especially under treatment; however SIV models will remain an important tool to understand how to eradicate the latent reservoir.
References
-
A comparison of herpes simplex virus type 1 and varicella-zoster virus latency and reactivationJournal of General Virology 96:1581–1602.https://doi.org/10.1099/vir.0.000128
-
Epigenetics and genetics of viral latencyCell Host & Microbe 19:619–628.https://doi.org/10.1016/j.chom.2016.04.008
-
Viremic relapse after HIV-1 remission in a perinatally infected childNew England Journal of Medicine 372:786–788.https://doi.org/10.1056/NEJMc1413931
Article and author information
Author details
Publication history
Copyright
© 2019, Larragoite and Spivak
This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.
Metrics
-
- 2,451
- views
-
- 112
- downloads
-
- 0
- citations
Views, downloads and citations are aggregated across all versions of this paper published by eLife.
Download links
A two-part list of links to download the article, or parts of the article, in various formats.
Downloads (link to download the article as PDF)
Open citations (links to open the citations from this article in various online reference manager services)
Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)
Viral Latency: Down but not out
eLife 8:e53363.
https://doi.org/10.7554/eLife.53363
Further reading
-
- Microbiology and Infectious Disease
Saprolegnia parasitica is one of the most virulent oomycete species in freshwater aquatic environments, causing severe saprolegniasis and leading to significant economic losses in the aquaculture industry. Thus far, the prevention and control of saprolegniasis face a shortage of medications. Linalool, a natural antibiotic alternative found in various essential oils, exhibits promising antimicrobial activity against a wide range of pathogens. In this study, the specific role of linalool in protecting S. parasitica infection at both in vitro and in vivo levels was investigated. Linalool showed multifaceted anti-oomycetes potential by both of antimicrobial efficacy and immunomodulatory efficacy. For in vitro test, linalool exhibited strong anti-oomycetes activity and mode of action included: (1) Linalool disrupted the cell membrane of the mycelium, causing the intracellular components leak out; (2) Linalool prohibited ribosome function, thereby inhibiting protein synthesis and ultimately affecting mycelium growth. Surprisingly, meanwhile we found the potential immune protective mechanism of linalool in the in vivo test: (1) Linalool enhanced the complement and coagulation system which in turn activated host immune defense and lysate S. parasitica cells; (2) Linalool promoted wound healing, tissue repair, and phagocytosis to cope with S. parasitica infection; (3) Linalool positively modulated the immune response by increasing the abundance of beneficial Actinobacteriota; (4) Linalool stimulated the production of inflammatory cytokines and chemokines to lyse S. parasitica cells. In all, our findings showed that linalool possessed multifaceted anti-oomycetes potential which would be a promising natural antibiotic alternative to cope with S. parasitica infection in the aquaculture industry.
-
- Genetics and Genomics
- Microbiology and Infectious Disease
Polyamines are biologically ubiquitous cations that bind to nucleic acids, ribosomes, and phospholipids and, thereby, modulate numerous processes, including surface motility in Escherichia coli. We characterized the metabolic pathways that contribute to polyamine-dependent control of surface motility in the commonly used strain W3110 and the transcriptome of a mutant lacking a putrescine synthetic pathway that was required for surface motility. Genetic analysis showed that surface motility required type 1 pili, the simultaneous presence of two independent putrescine anabolic pathways, and modulation by putrescine transport and catabolism. An immunological assay for FimA—the major pili subunit, reverse transcription quantitative PCR of fimA, and transmission electron microscopy confirmed that pili synthesis required putrescine. Comparative RNAseq analysis of a wild type and ΔspeB mutant which exhibits impaired pili synthesis showed that the latter had fewer transcripts for pili structural genes and for fimB which codes for the phase variation recombinase that orients the fim operon promoter in the ON phase, although loss of speB did not affect the promoter orientation. Results from the RNAseq analysis also suggested (a) changes in transcripts for several transcription factor genes that affect fim operon expression, (b) compensatory mechanisms for low putrescine which implies a putrescine homeostatic network, and (c) decreased transcripts of genes for oxidative energy metabolism and iron transport which a previous genetic analysis suggests may be sufficient to account for the pili defect in putrescine synthesis mutants. We conclude that pili synthesis requires putrescine and putrescine concentration is controlled by a complex homeostatic network that includes the genes of oxidative energy metabolism.
