Abstract

We introduce a random access parallel (RAP) imaging modality that uses a novel design inspired by a Newtonian telescope to image multiple spatially separated samples without moving parts or robotics. This scheme enables near simultaneous image capture of multiple petri dishes and random-access imaging with sub-millisecond switching times at the full resolution of the camera. This enables the RAP system to capture long duration records from different samples in parallel, which is not possible using conventional automated microscopes. The system is demonstrated by continuously imaging multiple cardiac monolayer and Caenorhabditis elegans (C. elegans) preparations.

Data availability

All data generated during this study are included in the manuscript and supporting files

Article and author information

Author details

  1. Mishal Ashraf

    Department of Physiology, McGill University, Montreal, Canada
    Competing interests
    The authors declare that no competing interests exist.
  2. Sharika Mohanan

    Physics and Astronomy, University of Exeter, Exeter, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
  3. Byu Ri Sim

    Department of Physiology, McGill University, Montreal, Canada
    Competing interests
    The authors declare that no competing interests exist.
  4. Anthony Tam

    Department of Physiology, McGill University, Montreal, Canada
    Competing interests
    The authors declare that no competing interests exist.
  5. Kiamehr Rahemipour

    Physiology, McGill University, Montreal, Canada
    Competing interests
    The authors declare that no competing interests exist.
  6. Denis Brousseau

    Department of Physics, Physical Engineering and Optics, Université Laval, Quebec, Canada
    Competing interests
    The authors declare that no competing interests exist.
  7. Simon Thibault

    Department of Physics, Physical Engineering and Optics, Université Laval, Quebec, Canada
    Competing interests
    The authors declare that no competing interests exist.
  8. Alexander D Corbett

    Physics and Astronomy, University of Exeter, Exeter, United Kingdom
    For correspondence
    A.Corbett@exeter.ac.uk
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1645-5475
  9. Gil Bub

    Physiology, McGill University, Montreal, Canada
    For correspondence
    gilbub@gmail.com
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-5304-0036

Funding

National Science and Engineering Research Council of Canada (RGPIN-2018-05346)

  • Gil Bub

National Science and Engineering Research Council of Canada (RGPIN-2016-05962)

  • Simon Thibault

Funders support enabled acquisition of equipment used in this study and also funded summer student stipends for undergraduate authors.

Copyright

© 2021, Ashraf et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 4,532
    views
  • 452
    downloads
  • 16
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Mishal Ashraf
  2. Sharika Mohanan
  3. Byu Ri Sim
  4. Anthony Tam
  5. Kiamehr Rahemipour
  6. Denis Brousseau
  7. Simon Thibault
  8. Alexander D Corbett
  9. Gil Bub
(2021)
Random access parallel microscopy
eLife 10:e56426.
https://doi.org/10.7554/eLife.56426

Share this article

https://doi.org/10.7554/eLife.56426

Further reading

    1. Neuroscience
    Cameron T Ellis, Tristan S Yates ... Nicholas Turk-Browne
    Research Article

    Studying infant minds with movies is a promising way to increase engagement relative to traditional tasks. However, the spatial specificity and functional significance of movie-evoked activity in infants remains unclear. Here, we investigated what movies can reveal about the organization of the infant visual system. We collected fMRI data from 15 awake infants and toddlers aged 5–23 months who attentively watched a movie. The activity evoked by the movie reflected the functional profile of visual areas. Namely, homotopic areas from the two hemispheres responded similarly to the movie, whereas distinct areas responded dissimilarly, especially across dorsal and ventral visual cortex. Moreover, visual maps that typically require time-intensive and complicated retinotopic mapping could be predicted, albeit imprecisely, from movie-evoked activity in both data-driven analyses (i.e. independent component analysis) at the individual level and by using functional alignment into a common low-dimensional embedding to generalize across participants. These results suggest that the infant visual system is already structured to process dynamic, naturalistic information and that fine-grained cortical organization can be discovered from movie data.

    1. Neuroscience
    Kentaro K Ishii, Koichi Hashikawa ... Garret D Stuber
    Research Article

    Male ejaculation acutely suppresses sexual motivation in male mice. In contrast, relatively little is known about how male ejaculation affects sexual motivation and sexual behavior in female mice. How the brain responds to the completion of mating is also unclear. Here, by using a self-paced mating assay, we first demonstrate that female mice show decreased sexual motivation acutely after experiencing male ejaculation. By using brain-wide analysis of activity-dependent labeling, we next pin-pointed the medial preoptic area as a brain region strongly activated during the post-ejaculatory period. Furthermore, using freely moving in vivo calcium imaging to compare the neural activity of inhibitory and excitatory neurons in the medial preoptic area, we revealed that a subset of the neurons in this region responds significantly and specifically to male ejaculation but not to female-to-male sniffing or to male mounting. While there were excitatory and inhibitory neurons that showed increased response to male ejaculation, the response magnitude as well as the proportion of neurons responding to the event was significantly larger in the inhibitory neuron population. Next, by unbiased classification of their responses, we also found a subpopulation of neurons that increase their activity late after the onset of male ejaculation. These neurons were all inhibitory indicating that male ejaculation induces a prolonged inhibitory activity in the medial preoptic area. Lastly, we found that chemogenetic activation of medial preoptic area neurons that were active during the post-ejaculatory period, but not during appetitive or consummatory periods, were sufficient to suppress female sexual motivation. Together, our data illuminate the importance of the medial preoptic area as a brain node which encodes a negative signal that sustains a low sexual motivation state after the female mice experience ejaculation.