Rescuable sleep and synaptogenesis phenotypes in a Drosophila model of O-GlcNAc transferase intellectual disability
Abstract
O-GlcNAcylation is an essential intracellular protein modification mediated by O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA). Recently, missense mutations in OGT have been linked to intellectual disability, indicating that this modification is important for the development and functioning of the nervous system. However, the processes that are most sensitive to perturbations in O-GlcNAcylation remain to be identified. Here, we uncover quantifiable phenotypes in the fruit fly Drosophila melanogaster carrying a patient-derived OGT mutation in the catalytic domain. Hypo-O-GlcNAcylation leads to defects in synaptogenesis and reduced sleep stability. Both these phenotypes can be partially rescued by genetically or chemically targeting OGA, suggesting that a balance of OGT/OGA activity is required for normal neuronal development and function.
Editor's evaluation
This important study describes a model for O-GlcNac transferase (OGT) associated Intellectual Disability in Drosophila. The authors present convincing data showing that OGT mutant Drosophila exhibit defects in neuronal arborisation in development and behaviour (sleep) in adults. These results will be of interest to researchers and clinicians working on protein modifications and intellectual disability.
https://doi.org/10.7554/eLife.90376.sa0Introduction
Intellectual disability (ID) is a disorder affecting around 1% of the population globally (McKenzie et al., 2016), characterised by an intelligence quotient lower than 70 accompanied by reduced adaptive behaviour (Salvador-Carulla et al., 2011). Recently, mutations in the X chromosome gene OGT were identified as causal for ID, a condition termed OGT congenital disorder of glycosylation (OGT-CDG) (Willems et al., 2017; Pravata et al., 2020b; Pravata et al., 2019; Pravata et al., 2020a; Vaidyanathan et al., 2017). Patients with OGT-CDG present with diverse signs of varying penetrance, such as microcephaly and white matter abnormalities, as well as non-neurological signs such as clinodactyly, facial dysmorphism, and developmental delay, manifesting as low birth weight and short stature (Pravata et al., 2020b). Beyond ID, non-morphological signs of pathogenic OGT mutations include behavioural problems as well as sleep abnormalities and epilepsy (Pravata et al., 2020b; Selvan et al., 2018).
OGT encodes a nucleocytoplasmic glycosyltransferase, O-linked β-N-acetyl glucosamine (O-GlcNAc) transferase (OGT), a multifunctional protein composed of two domains: a tetratricopeptide repeat (TPR) domain and a catalytic domain (Kreppel and Hart, 1999; Lubas et al., 1997; Kreppel et al., 1997). Mutations affecting either domain have been identified in patients with OGT-CDG, though clinical manifestation of the disorder does not appear to segregate with the domain affected (Pravata et al., 2020b), suggesting a common disease mechanism. The N-terminal TPR domain is believed to confer substrate specificity for the glycosyltransferase function of OGT (Iyer and Hart, 2003; Levine et al., 2018; Clarke et al., 2008) and is important for non-catalytic functions of the protein (Urso et al., 2020; Levine et al., 2021). The catalytic domain fulfils two known functions, the transfer of O-GlcNAc onto serine and threonine residues of nucleocytoplasmic proteins (O-GlcNAcylation) Torres and Hart, 1984; Holt et al., 1987, and the proteolytic activation of Host Cell Factor 1 (HCF-1) (Capotosti et al., 2011; Lazarus et al., 2013), a known ID-associated protein (Castro and Quintana, 2020). While the latter function of OGT potentially contributes to the pathogenicity of some OGT mutations (Pravata et al., 2019), not all patient mutations have been found to affect HCF-1 processing, neither in vitro nor when modelled in stem cells (Vaidyanathan et al., 2017; Selvan et al., 2018; Omelková et al., 2023). Overall, the role of altered O-GlcNAcylation in OGT-CDG pathogenicity remains an open question, as many of the other functions fulfilled by this protein have the potential to contribute to ID.
O-GlcNAcylation is a dynamic modification occurring on around 5000 proteins in the human proteome (Wulff-Fuentes et al., 2021). The dynamic nature of the modification is conferred by O-GlcNAcase (OGA), which opposes OGT, catalysing the removal of O-GlcNAc (Heckel et al., 1998; Gao et al., 2001). O-GlcNAcylation has been extensively implicated in neuronal development, functioning, and disease (Lee et al., 2021; Muha et al., 2021; Lagerlöf et al., 2017; Olivier-Van Stichelen et al., 2017; Chen et al., 2021; Kim et al., 2017) and is therefore likely to play a key role in the pathogenicity of OGT-CDG. The first evidence for the requirement for OGT in development was the study of Drosophila melanogaster OGT, super sex combs (sxc), as a Polycomb group (PcG) gene, amorphic mutations of which were found to result in defects in body segment determination (Ingham, 1984), a function later ascribed to its glycosyltransferase activity (Gambetta and Müller, 2014). The role of O-GlcNAcylation in PcG function is known to be important for normal neuronal development and highly sensitive to perturbations. For example, maternal hyperglycaemia can drive increased O-GlcNAcylation in the embryo altering neuronal maturation and differentiation patterns through altered PcG function (Parween et al., 2022). Multiple additional core developmental regulators have been found to require O-GlcNAcylation for appropriate function, with deregulation of the modification affecting stem cell maintenance through core pluripotency factors such as Sox2 (Kim et al., 2021a; Jang et al., 2012; Myers et al., 2016), cell fate determination through STAT3 (Fan et al., 2020), and Notch signalling (Chen et al., 2021) and neuronal morphogenesis through the protein kinase A signalling cascade (Francisco et al., 2009). Additionally, O-GlcNAcylation is known to play an important role in neuronal functioning related to memory formation (Muha et al., 2019; Taylor et al., 2014). For example, elevating O-GlcNAcylation in sleep-deprived zebrafish or mice can reverse memory defects associated with a lack of sleep (Lee et al., 2020; Kim et al., 2021b). The extent of the role of OGT in memory formation is not fully understood, although several proteins important for this process are modulated by O-GlcNAcylation, such as CREB (Rexach et al., 2012) or CRMP2 (Muha et al., 2019). Therefore, a key unanswered question regarding the aetiology of OGT-CDG is the contribution of the developmental roles of OGT relative to its role in the functioning of the adult nervous system.
With the large number of functionally O-GlcNAcylated proteins and thousands more which remain uncharacterised, identifying the most important processes controlled by O-GlcNAcylation remains challenging. Patient mutations in the catalytic domain present a unique opportunity to better understand processes most sensitive to defective O-GlcNAc cycling. Therefore, we set out to model catalytic domain ID mutations in Drosophila melanogaster and characterise their phenotypic effect. Drosophila OGT (DmOGT) is highly similar to its human ortholog, with 73% amino acid identity and a high degree of structural similarity (Mariappa et al., 2015). However, in the fly OGT does not catalyse HCF-1 proteolytic activation, a function fulfilled instead by taspase 1 (Capotosti et al., 2007), eliminating this function of OGT as a confounding variable in understanding the role of O-GlcNAcylation in ID. Previous work modelling OGT-CDG mutations in Drosophila has demonstrated that OGT-CDG catalytic domain mutations can reduce global O-GlcNAcylation in adult tissue (Pravata et al., 2019), which is linked with defects in habituation and synaptogenesis (Fenckova et al., 2022). Here, we demonstrate that a recently discovered ID-associated catalytic domain mutation in OGT (resulting in the amino acid substitution C921Y Omelková et al., 2023) can reduce O-GlcNAcylation throughout development in Drosophila, which can be rescued by genetically or pharmacologically abolishing or reducing OGA activity, respectively. We find a strong effect of sxc mutations on larval neuromuscular junction (NMJ) development, which can be partially reversed by inhibiting or abolishing OGA catalytic activity. Additionally, we demonstrate that a catalytic domain mutation in sxc can negatively impact sleep, reducing sleep bout duration. This phenotype can be rescued by abolishing OGA activity and partially reversed by inhibiting OGA in adulthood, suggesting that some aspects of OGT-CDG may not be developmental in origin.
Results
An OGT-CDG mutation reduces global O-GlcNAcylation throughout Drosophila development
To investigate the contribution of reduced O-GlcNAcylation to phenotypes relevant to OGT-CDG, catalytic domain mutations found in patients were modelled in Drosophila using CRISPR-Cas9 mutagenesis. The previously published sxcN595K (equivalent to human N567K) Pravata et al., 2019 and the newly generated sxcC941Y (equivalent to human C921Y) mutant strains were used to assay the effects of OGT-CDG mutations on global O-GlcNAcylation in adult flies. Consistent with previous reports, O-GlcNAcylation in lysates from adult heads was found to be significantly reduced in the sxcN595K mutant compared to a control genotype (Figure 1A; Pravata et al., 2019). The newly generated sxcC941Y mutant strain presented with a significantly more severe reduction in global O-GlcNAcylation, to roughly 40% of the control genotype. This reduction in O-GlcNAcylation was observed despite a modest, yet significant, increase in OGT protein relative to the control genotype. As the reduction in O-GlcNAcylation was modest in the sxcN595K line, a previously generated catalytically dead mutant strain (sxcK872M) was further characterised alongside the newly generated sxcC941Y variant (Mariappa et al., 2018), to control for allele-specific effects. The sxcK872M genotype was previously found to be recessive lethal at the late pupal stages (Mariappa et al., 2018); therefore, for this genotype O-GlcNAcylation and OGT levels were only assayed at embryonic and larval stages. Both sxcC941Y and sxcK872M stage 16–17 embryos present with significantly reduced O-GlcNAcylation and increased OGT (Figure 1B). As sxcK872M embryos were derived from heterozygous parents, O-GlcNAcylation seen in these embryos is likely largely due to maternally contributed wildtype sxc gene product (Ingham, 1984; Sinclair et al., 2009). By the third-instar larval stage of development, the difference in O-GlcNAcylation between the sxcC941Y and sxcK872M genotypes is more pronounced. sxcK872M larvae present with significantly lower O-GlcNAcylation than both the control and sxcC941Y genotype (Figure 1C). O-GlcNAcylation in the sxcC941Y larvae remains significantly reduced relative to the control genotype, as at all other stages of development assayed. Surprisingly, at this stage of development, sxcC941Y larvae do not present with significantly elevated DmOGT protein levels. Strikingly, the mean DmOGT protein levels in sxcK872M larvae are over eight times higher than in the control genotype.
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Figure 1—source data 1
- https://cdn.elifesciences.org/articles/90376/elife-90376-fig1-data1-v3.xlsx
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Figure 1—source data 2
- https://cdn.elifesciences.org/articles/90376/elife-90376-fig1-data2-v3.zip
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Figure 1—source data 3
- https://cdn.elifesciences.org/articles/90376/elife-90376-fig1-data3-v3.zip
To determine whether the phenotypic consequences of loss of O-GlcNAc transferase function in the sxcC941Y mutant flies results in similar phenotypic consequences as a previously characterised Drosophila line carrying a hypomorphic mutation in sxc (sxcH537A), flies were assayed for scutellar bristle development (Mariappa et al., 2018). sxcC941Y flies were found to also present with an increased penetrance of ectopic bristles on the scutellum, with 31% of sxcC941Y flies presenting with one or more additional bristles, while in the control genotype this only occurred in 8% of flies (Figure 1—figure supplement 1A). Taken together, these results demonstrate that hypo-GlcNAcylation due to OGT-CDG variants can be modelled in Drosophila. Further supporting the hypothesis that reduced OGT catalytic activity is causal in phenotypes seen in ID, a patient mutation modelled in Drosophila results in a similar phenotype as rational mutagenesis of a key DmOGT catalytic residue.
Pharmacological rescue of O-GlcNAc levels in sxcC941Y flies
To evaluate whether reduced O-GlcNAcylation in sxc mutants with impaired catalytic activity can be rescued to control levels, we sought to elevate O-GlcNAcylation through both genetic and pharmacological means. First, to demonstrate that O-GlcNAcylation can be rescued in flies with impaired DmOGT catalytic activity by abolishing OGA activity, sxc mutant flies were crossed with an Oga knockout strain (OgaKO) (Muha et al., 2020). When assayed by Western blot, we found that knocking out OGA led to a marked increase in O-GlcNAcylation in lysates from adult heads in the sxcC941Y line, above levels seen in the control genotype (Figure 2A). To assay whether this rescue of O-GlcNAcylation could reverse a phenotype caused by reduced O-GlcNAc transferase activity, we compared the number of scutellar bristles in sxcWT, sxcC941Y, sxcC941Y;OgaKO, and OgaKO flies. Surprisingly, we found that despite the OgaKO allele having no effect on its own, sxcC941Y;OgaKO flies had an increased penetrance of ectopic scutellar bristles beyond what we observed for sxcC941Y flies (Figure 1—figure supplement 1B).
We next set out to identify concentrations at which the OGA inhibitor Thiamet G (TMG) (Yuzwa et al., 2008) would restore sxcC941Y global O-GlcNAcylation to control levels. To elevate O-GlcNAcylation in adult Drosophila, young adult flies were placed on food supplemented with TMG for 72 hr prior to analysis by western blotting (Figure 2B). After assaying varying concentrations of OGA inhibitor, we found that global O-GlcNAcylation was rescued to control levels in sxcC941Y flies fed 3 mM TMG for 72 hr. Paradoxically, a higher 5 mM concentration did not have the same effect. Flies fed this higher concentration of TMG were found to have significantly decreased global O-GlcNAcylation relative to the control genotype, though this appeared to be due to an alteration in the pattern of O-GlcNAcylation with some substrates retaining elevated O-GlcNAcylation relative to sxcC941Y flies fed standard food (Figure 2—figure supplement 1). Accompanying elevated O-GlcNAcylation, TMG treatment resulted in decreased levels of DmOGT. For sxcC941Y flies fed 3 mM TMG, DmOGT protein levels were rescued to control levels, while for flies fed 5 mM TMG, DmOGT decreased below levels seen in the control genotype. To assay whether the same pharmacological rescue could be performed during development, adults were allowed to lay eggs on food supplemented with TMG and the O-GlcNAcylation levels of their offspring were measured by western blot at the wandering third-instar stage (Figure 2C). Presumably due to differences in feeding behaviour, TMG concentrations required to rescue O-GlcNAcylation during the larval stages of development were much lower than for adults. At 150 μM TMG, O-GlcNAcylation in sxcC941Y larvae was no longer significantly different from the control genotype, while O-GlcNAcylation in larvae fed 200 μM TMG was both significantly higher than in the sxcC941Y larvae fed standard food and not significantly different from the control genotype. Overall, these results demonstrate that defective O-GlcNAc homeostasis in flies carrying an OGT-CDG mutation can be restored by reducing OGA activity through pharmacological inhibition.
sxcC941Y flies possess a NMJ bouton phenotype
Previous research has identified an important role for O-GlcNAcylation in excitatory synapse function (Lagerlöf et al., 2017; Fenckova et al., 2022; Muha et al., 2020). To ascertain the contribution of this role of O-GlcNAcylation to ID, synaptic development was assayed at the larval NMJ. This synapse is an established model for mammalian central nervous system excitatory synapses and has been previously used to study the role of genes implicated in ID (Pan et al., 2004). To assay the effects of sxc mutations on NMJ morphology, type 1b NMJs of muscle 4 were visualised by immunostaining for the subsynaptic reticulum protein Discs large 1 (Dlg1) (Gan and Zhang, 2018) and with an anti-HRP antibody to visualise neuronal membranes (Fabini et al., 2001; Figure 3A). Upon quantification with a semiautomated ImageJ macro (Nijhof et al., 2016), several parameters measured were found to significantly differ between the NMJs in control genotype larvae and sxcC941Y and the catalytically dead sxcK872M larvae. The average NMJ area in sxcWT larvae (mean ± standard deviation, 326 ± 52 μm2) was significantly higher than in both sxcC941Y (278 ± 28 μm2) and sxcK872M mutant larvae (198 ± 32 μm2), with a significant difference between the two sxc mutant groups. This phenotype was partially rescued in the sxcC941Y;OgaKO line (291 ± 39 μm2), relative to the control genotype, although the total area of the NMJs was not affected in the OgaKO larvae (337 ± 32 μm2), consistent with previous research on OgaKO larvae (Fenckova et al., 2022; Figure 3B). Total length was also significantly different between the control genotype (mean ± standard deviation, 115 ± 18 μm) and sxcC941Y (93 ± 11 μm) and sxcK872M larvae (74 ± 7 μm). This parameter was also partially rescued in sxcC941Y;OgaKO larvae (102 ± 14 μm) relative to sxcWT larvae, while being unaffected in the OgaKO genotype (115 ± 13 μm) (Figure 3C). Finally, bouton numbers were also significantly reduced in both sxcC941Y (mean ± standard deviation, 15 ± 3) and sxcK872M (12 ± 1) larvae, relative to the sxcWT controls (19 ± 3). Unlike total area and length, this parameter remained significantly reduced in the sxcC941Y;OgaKO line (16 ± 2) relative to the control genotype (Figure 3D).
As O-GlcNAcylation has been shown to regulate overall body size (Sekine et al., 2010; Park et al., 2011) and NMJ area correlates with muscle size (Nijhof et al., 2016), we decided to measure muscle size in sxcK872M larvae to determine whether changes in overall body growth could explain the NMJ phenotype we observed. No significant difference in muscle size was observed between sxcWT and sxcK872M larvae, and when NMJ area was normalised to muscle area, this parameter remained significantly reduced in sxcK872M larvae (Figure 3—figure supplement 1A). Further, to ascertain whether loss of normal O-GlcNAcylation impairs NMJ bouton growth through pre-synaptic or post-synaptic mechanisms, wild type sxc was overexpressed either in neurons (elavL3-Gal4) or muscles (mhc-Gal4), in a DmOGT catalytically dead background (sxcK872M). This demonstrated that overexpression of wild type sxc in sxcK872M larval neurons could significantly increase NMJ total area, but not length or bouton number. By contrast, similar overexpression in muscle cells did not lead to any significant effect on NMJ morphology (Figure 3—figure supplement 2). Overall, growth of larval NMJs is broadly stunted in larvae modelling OGT-CDG and in larvae completely lacking OGT catalytic activity, with the phenotype partially rescued in the former by knocking out Oga. This is at odds with previously published research, which shows that both rationally designed hypomorphic mutants and ID mutations in the TPR domain result in increased growth at the NMJ (Fenckova et al., 2022). To address this disparity, we measured NMJ parameters in larvae of one of the genotypes previously assayed, sxcH596F. We found that this mutation also results in a significant decrease in NMJ area (mean ± standard deviation, 260 ± 23 μm2) relative to the control genotype (304 ± 18 μm2), with a similar effect for length and bouton number, consistent with the other genotypes assayed here (Figure 3—figure supplement 1B–E).
Pharmacological rescue of OGT-CDG NMJ phenotypes
To determine whether the (partial) rescue of NMJ parameters by genetic ablation of OGA activity can be recapitulated by pharmacological means, larvae were fed 200 μM TMG to elevate O-GlcNAcylation to control levels, as previously determined (Figure 2C). As with knocking out Oga, elevating O-GlcNAcylation pharmacologically resulted in a partial rescue of NMJ parameters (Figure 4A). The total NMJ area in sxcC941Y larvae treated with 200 μM TMG (mean ± standard deviation, 303 ± 40 μm2) was no longer significantly different relative to the control genotype (319 ± 31 μm2) while sxcC941Y fed a vehicle control presented with reduced NMJ area relative to the control genotype (272 + 40 μm2) (Figure 4B). Unlike in sxcC941Y;OgaKO larvae, TMG inhibition in sxcC941Y larvae did not significantly rescue NMJ length (median ± interquartile range, 106 ± 13 μm) relative to the control genotype (117 ± 9 μm), although a non-significant increase in length relative to sxcC941Y larvae fed a vehicle was observed (95 μm ± 8) (Figure 4C). Similar to the OGA knockout experiment (Figure 3D), sxcC941Y larvae fed 200 μM TMG presented with significantly fewer boutons per NMJ (mean ± standard deviation, 16 ± 2) relative to the control genotype (19 ± 2) without a significant difference relative to the sxcC941Y larvae fed a vehicle control (15 ± 2) (Figure 4D). Overall, this demonstrates that pharmacological inhibition of OGA activity can partially rescue synaptogenesis in OGT-CDG mutant larvae.
Fragmented sleep in sxcC941Y flies is reversible by normalising global O-GlcNAcylation
Patients with ID present with hyper-activity and sleep disturbances more often than the general population (Faraone et al., 2017; Köse et al., 2017). Several patients affected by OGT-CDG follow this pattern, presenting with sleep disturbances and behavioural abnormalities (Pravata et al., 2020b; Selvan et al., 2018). To assay whether activity and sleep are also disrupted in a Drosophila model of OGT-CDG, we used the Drosophila Activity Monitor (DAM) to measure these parameters (Figure 5A and B). In Drosophila research, sleep is commonly defined as a period of five or more minutes of quiescence, which is accurately measured by the DAM system (Donelson et al., 2012). Total activity of sxcC941Y flies (median ± interquartile range, 1.25e3 ± 6.6e2 counts/24 hr) was not significantly different from the control genotype (1.23e3 ± 5.8e2 counts/24 hr). However, sxcC941Y;OgaKO flies were significantly less active than the control genotype (8.9e2 ± 3.9e2 counts/24 hr), despite the OgaKO allele having no effect on total activity on its own (1.13e3 ± 5.7e2 counts/24 hr) (Figure 5C). By contrast, sxcC941Y flies did present with reduced total sleep (mean ± standard deviation, 8.1e2 ± 1.8e2 min/24 hr), relative to the control genotype (9.4e2 ± 1.4e2 min/24 hr), which was rescued in sxcC941Y;OgaKO flies to wild type levels (9.7e2 ± 1.3e2 min/24 hr) (Figure 5D). Upon more detailed investigation, the nature of sleep disruption in the OGT-CDG flies was found to be due to a reduced duration of individual sleep bouts both during the day and night in these flies (median ± interquartile range, 28 ± 13 min and 39 ± 30 min, respectively) compared to the control genotype (42 ± 22 min and 75 ± 56 min, respectively). Mean sleep bout duration in sxcC941Y flies is partially rescued by elevating global O-GlcNAcylation through knocking out Oga both during the day (32 ± 19 min) and at night (56 ± 40 min), although during both time periods sleep bout duration remained significantly reduced compared to the control genotype (Figure 5E). Upon further investigation of sleep bout duration, we found that the differences in sleep patterns between genotypes could be explained by the inability of sxcC941Y flies to maintain longer sleep bouts. sxcWT flies experience significantly more sleep bouts longer than 2 hr (median ± interquartile range 2.0 ± 1.0 bouts/24 hr) relative to sxcC941Y flies (1 ± 1.3 bouts). This aspect of sleep is also rescued by knocking out Oga, with sxcC941Y;OgaKO flies no longer presenting with a significant decrease in number of sleep bouts longer than 2 hr (1.7 ± 1.3 bouts/24 hr) (Figure 5G). Accompanying decreased sleep bout duration, sxcC941Y and sxcC941Y;OgaKO flies present with significantly more frequent sleep bouts during the day (mean ± standard deviation 13 ± 3 and 14 ± 5 bouts, respectively) and at night (14 ± 5 and 13 ± 5 bouts, respectively), compared to the control genotype (day: 11 ± 4 and night: 9 ± 4 bouts, respectively) (Figure 5F). These results indicate that the sleep defects in sxcC941Y flies are only partially rescued by elevating global O-GlcNAcylation, with the modest rescue of sleep bout duration seen upon loss of OGA fully rescuing total sleep, in part due to sleep frequency remaining unaltered and above the control genotype levels.
To dissect developmental from non-developmental contributions to this sleep phenotype, we investigated whether elevating O-GlcNAcylation only in adulthood could rescue the sleep phenotype observed in sxcC941Y flies. Adult sxcC941Y flies were fed 3 mM TMG for 72 hr prior to and during activity monitoring. In this condition, OGT-CDG flies no longer presented with decreased overall sleep duration (Figure 6A). This may be explained by differences in fly food used during this assay, to accommodate the addition of TMG. However, other aspects of sleep remained disrupted in OGT-CDG flies. Both mean sleep duration (median ± interquartile range, day: 22 ± 10 min, night: 44 ± 26 min) and daily number of sleep bouts longer than 2 hr (median ± interquartile range, 1 ± 1 bouts/24 hr) remained significantly reduced compared to the sxcWT control (day: 28 ± 13 min, night: 50 ± 43, 1.3 ± 1.0 bouts/24 hr, respectively). Additionally, as in previous experiments, sxcC941Y flies presented with significantly more sleep bouts throughout the day (mean ± standard deviation, day: 17 ± 4 bouts, night: 15 ± 5 bouts) than the control genotype (day: 14 ± 4 bouts, night: 12 ± 4 bouts) (Figure 6B–D). Interestingly, these phenotypes were partially reversed by TMG feeding. Mean sleep bout duration in sxcC941Y flies fed TMG was no longer significantly different from the control genotype both during the day and at night (26 ± 13 min and 44 ± 39 min, respectively), nor was the number of sleep bouts longer than 2 hr (1.3 ± 1.0 bouts/24 hr). The number of sleep bouts in sxcC941Y flies fed TMG was also no longer significantly different than for the control genotype fed a vehicle control (day: 16 ± 3 bouts, night: 13 ± 4 bouts), although it remained non-significantly elevated relative to the control genotype. This rescue was not due to non-specific effects of TMG on feeding behaviour, such as aversion due to altered food taste, as neither genotype nor inclusion of TMG in food influenced total feeding (Figure 6—figure supplement 1). These results suggest that effects of OGT-CDG mutations may not be solely developmental, and that defective O-GlcNAc cycling in adulthood may be an important contributor to the pathogenesis of these mutations.
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Figure 6—source data 1
- https://cdn.elifesciences.org/articles/90376/elife-90376-fig6-data1-v3.zip
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Figure 6—source data 2
- https://cdn.elifesciences.org/articles/90376/elife-90376-fig6-data2-v3.xlsx
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Figure 6—source data 3
- https://cdn.elifesciences.org/articles/90376/elife-90376-fig6-data3-v3.csv
Glial knockdown of sxc partially phenocopies sxcC941Y fragmented sleep
Sleep in Drosophila and in humans is regulated by multiple cell types. To determine which cell types require normal O-GlcNAcylation to regulate sleep, we decided to knock down sxc in neurons and glia as both have been extensively implicated in this process (Shafer and Keene, 2021). Upon neuronal knockdown of sxc, no difference in total sleep (median ± interquartile range, 474 ± 228 min/24 hr) (Figure 7A) nor mean sleep bout duration (median ± interquartile range, day: 17 ± 10 min, night: 23 ± 14 min) (Figure 7B) was observed relative to the GAL4 control (total sleep 510 ± 232 min, mean sleep bout duration day: 11 ± 9 min, night: 28 ± 17 min). However, neuronal knockdown of sxc significantly affects sleep bout number, during the daytime decreasing (mean ± standard deviation, 8 ± 5 bouts) relative to both the elav GAL4 (12 ± 4 bouts) and UAS (12 ± 4 bouts) control lines (Figure 7C). Conversely, knockdown of sxc in glial cells resulted in a significant decrease in total daily sleep (median ± interquartile range, 690 ± 230 min/24 hr), relative to a GAL4 (800 ± 170 min/24 hr), and UAS control (960 ± 120 min/24 hr) (Figure 7A). As in sxcC941Y flies, glial knockdown caused a decrease in the mean duration of sleep episodes (median ± interquartile range, day: 29 ± 26 min, night: 31 ± 19 min) compared with the control GAL4 (day: 38 ± 32 min, night: 46 ± 26 min) and UAS genotypes (day: 39 ± 24 min, night: 57 ± 40 min, Figure 7B); however, this effect is only significant during the night. Unlike in OGT-CDG flies, the number of sleep bouts was not significantly increased in flies expressing sxc RNAi in glial cells (mean ± standard deviation, day: 12 ± 6 bouts, night: 13 ± 5 bouts) relative to either control (GAL4: day: 12 ± 6 bouts, night: 11 ± 5 bouts, UAS: day: 12 ± 4 bouts, night: 10 ± 4 bouts; Figure 7C). Flies expressing sxc RNAi in glial cells presented with fewer sleep bouts longer than 2 hr (median ± interquartile range, 1.0 ± 1.3 bouts/24 hr), however, only relative to the UAS control group (2 ± 0.7 bouts/24 hr) and not the repo GAL4 line (1.3 ± 0.7 bouts/24 hr) (Figure 7D).
Discussion
Many mutations in OGT causal in ID modelled previously do not result in a decrease in global O-GlcNAcylation either in embryonic stem cells or patient derived fibroblasts, in many cases due to feedback mechanisms reducing OGA protein levels (Willems et al., 2017; Pravata et al., 2019; Selvan et al., 2018). The cysteine to tyrosine substitution modelled here is one of only two patient mutations which has been shown to reduce global O-GlcNAcylation when introduced in mammalian cells (Pravata et al., 2020a; Omelková et al., 2023). Here, we have shown that patient mutations affecting the catalytic domain of OGT result in decreased O-GlcNAcylation in adult flies, corroborating previous results (Pravata et al., 2019). Expanding upon these results, we have demonstrated that an OGT-CDG catalytic domain mutation can reduce O-GlcNAcylation throughout development, despite a compensatory increase in total DmOGT protein. To assay O-GlcNAcylation levels, we used an antibody approach, yielding a coarse view of how OGT-CDG mutations affect the O-GlcNAcome, particularly given the known limitations and biases in using antibodies to detect this modification (Thompson et al., 2018). Though challenging, future research should expand on these results by quantitative analysis of changes to O-GlcNAcylation of specific protein substrates. When modelled in mouse embryonic stem cells, this mutation (C921Y in humans and mice) also results in an increase in OGT protein levels (Omelková et al., 2023). It is tempting to assert that increased OGT, as opposed to decreased OGA, is a homeostatic mechanism linked specifically to this mutation. However, in the fly, increased DmOGT protein levels appear to be a response commonly associated with decreased OGT catalytic activity, demonstrated here by the sxcK872M mutant stain and in previous work (Pravata et al., 2019). While this increase in DmOGT protein levels was not explored in further detail, some evidence exists for post-transcriptional regulation of sxc expression through alternate splicing (Ashton-Beaucage et al., 2010), a mechanism known be involved in the control of OGT and OGA expression and O-GlcNAc homeostasis in mammalian cells (Tan et al., 2020). We have also shown that reduced catalytic activity of DmOGT as a result of modelling a patient mutation in sxc can phenocopy rational mutagenesis of a key catalytic residue (sxcH537A) causing the growth of ectopic scutellar bristles (Mariappa et al., 2018). Also known as macrochaetae, the development of these sensory cells is well studied, particularly in the context of cell fate determination by lateral inhibition through Notch signalling (Parks et al., 1997), providing a tractable system for the understanding of the impacts of hypo-O-GlcNAcylation on cell fate determination. With reports of Notch signalling requiring appropriate O-GlcNAcylation (Chen et al., 2021), this phenotype presents an interesting system to research the contribution of the Notch signalling pathway to ID.
A key question regarding OGT-CDG is whether therapeutic approaches targeting OGA can raise O-GlcNAcylation and potentially ameliorate symptoms in this disorder, as previously proposed (Pravata et al., 2020b). Here, we show that normal global O-GlcNAcylation levels can be restored in sxcC941Y adult flies through knockout out of Oga. Previous research has demonstrated that OgaKO alleles can rescue phenotypes associated with reduced O-GlcNAcylation (Fenckova et al., 2022); however, here we present the first direct evidence that global O-GlcNAcylation can exceed control levels in DmOGT hypomorphic flies in the absence of OGA. While we did not see a concomitant rescue of the scutellar bristle phenotype seen in sxcC941Y flies, this may occur as a consequence of unique kinetics of O-GlcNAcylation and removal of O-GlcNAc on various DmOGT substrates, that is, the dysregulation of the ratio of stoichiometries of modification of specific substrates may be exacerbated in the absence of OGA. Previous research has demonstrated this may occur in mammalian cells, with some O-GlcNAcylated proteins not affected by OGA inhibition in cancer cells (Hahne et al., 2013; Li et al., 2019). Alternatively, it may be that both the addition and timely removal of O-GlcNAc from specific proteins is required for normal scutellar bristle development.
Complete ablation of Oga expression is a blunt approach, elevating O-GlcNAcylation levels beyond those seen in the control genotype and is not a feasible therapeutic approach. Pharmacological approaches to inhibit OGA offer more precise control over the degree of O-GlcNAcase activity and are being actively pursued as potential treatments for neurodegenerative disorders (Bartolomé-Nebreda et al., 2021). Our experiments suggest that the potent OGA inhibitor TMG can be used to rescue global O-GlcNAcylation levels in sxcC941Y flies to those of a genetic background control, at various stages of development. Interestingly, rescuing O-GlcNAcylation levels through OGA inhibition also restored OGT levels in sxcC941Y flies. However, there is a clear difference in the pattern of O-GlcNAcylation visualised by immunoblotting in adult sxcC941Y flies fed TMG relative to the control genotype. This incomplete rescue of O-GlcNAcylation may be consequential in phenotypic rescue. Additionally, a paradoxical effect was seen upon feeding higher doses of TMG. Because inhibition of OGA appears to reduce protein levels of OGT, global O-GlcNAc levels were not rescued at higher levels of TMG. However, specific immunoreactive bands appeared to maintain elevated levels of O-GlcNAc. This potentially indicates that mechanisms controlling OGT expression in response to O-GlcNAcylation levels are particularly sensitive to OGA activity, lowering OGT protein levels prior to O-GlcNAcylation stoichiometry rising on some OGT substrates.
Previous research has shown that alleles encoding hypomorphic variants of DmOGT result in overgrowth at the NMJ, and that TPR domain mutations modelling those seen in patients result in a similar phenotype (Fenckova et al., 2022). However, here, we observe the opposite effect, with both sxcC941Y and sxcK872M larvae presenting with smaller NMJs. This discrepancy is unlikely to be caused by allele-specific effects as this hypothesis was tested by assaying NMJ parameters in one of the hypomorphic mutants previously described and finding that this mutation (sxcH596F) also results in stunted growth at the NMJ. While we utilised different markers to count boutons than in previous research (Fenckova et al., 2022), discrepancies in area and length of NMJs cannot be explained in this manner. Nonetheless, as in previous research on the effects of reduced OGT catalytic activity on NMJ morphology, knocking out Oga can partially rescue phenotypes at this type of synapse (Fenckova et al., 2022), while a lack of Oga on its own does not affect NMJ morphology. Previous research on the role of Oga in axonal outgrowth at the larval NMJ is contradictory, with one report indicating a lack of functional OGA protein increases NMJ morphological parameters such as area and another suggesting no effect on NMJ growth in the absence of OGA (Muha et al., 2020Fenckova et al., 2022). Additionally, we also show that overall area of the NMJ can be elevated by overexpressing wild type sxc in neurons, in a DmOGT catalytically dead background (sxcK872M). Surprisingly, other parameters (such as bouton number and NMJ length) were not elevated by such overexpression, neither when targeting neurons nor muscle cells. This phenotype can also be partially rescued through pharmacological means, through the use of TMG. This could serve as proof of principle that pharmacological intervention in OGT-CDG is possible. This is not an immediately obvious conclusion as it is possible that beyond the stoichiometry of the modification on individual substrates the timing of addition and removal of O-GlcNAcylation could be important for synaptic development and function. Together, these findings suggest that the NMJ phenotype caused by loss of normal O-GlcNAcylation is complex, and that potentially alternate mechanisms impair bouton addition (which may also affect NMJ length) and overall NMJ area, as the latter is more amenable to rescue across various approaches.
We also demonstrate a novel behavioural effect resulting from catalytic domain mutations in sxc. Normal O-GlcNAc cycling is required for maintenance of sleep in adult flies, and reduced DmOGT catalytic activity as a result of an OGT-CDG mutation results in shorter, more frequent sleep episodes. Previously, a patient with this condition was reported to suffer from sleep disturbances characterised by abnormal EEG during sleep and insomnia (Selvan et al., 2018). This is particularly relevant given that normal sleep is required for multiple cognitive processes, such as memory formation, both in flies and humans (Ly et al., 2018; Berry et al., 2015; Rasch and Born, 2013). Encouragingly, this phenotype can be partially rescued by knocking out OGA or by pharmacologically elevating O-GlcNAcylation in adult flies. However, it is important to note that the phenotype was not consistently detected across varying experimental conditions. Specifically, when sleep was assayed in OGT-CDG flies fed an alternate food type (to accommodate the addition of TMG) total sleep was not reduced in sxcC941Y flies, despite bout duration and frequency being altered as for assays using standard Drosophila food. While not directly comparable, this may suggest that loss of OGT catalytic activity interacts with environmental factors such as dietary composition. Further investigation revealed that knocking down sxc in glial cells can result in a similar phenotype as the OGT-CDG mutation. While this does not rule out the involvement of neuronal cell types in this phenotype, the results presented here provide the first evidence for the potential involvement of non-neuronal cell types in OGT-CDG. Overall, these results could have important implications for our understanding of OGT-CDG, providing the first evidence that suggests that the disorder is not purely developmental and may be amenable to therapeutic approaches at later stages of life.
Materials and methods
CRIPSR-Cas9 mutagenesis
Request a detailed protocolThe gRNA sequence for generating the sxc C941Y flies was selected using the online tool Crispr.mit.edu. The optimal gRNA sequence was included in annealing oligos including overhangs compatible with cloning into the pCFD3-dU63gRNA plasmid previously cut with BpiI restriction enzyme. A 2 kb repair template for the region was generated from Drosophila Schneider 2 cell genomic DNA by PCR using GoTaq G2 Polymerase. The PCR product was cloned as a blunt product into the pTOPO-Blunt plasmid. Mutations were introduced into the template to include the C941Y mutation as well as silent mutations to remove the gRNA recognition sequence. This was carried out using the QuikChange kit from Stratagene and confirmed by DNA sequencing. The mutations removed the restriction site BseMI which is present in the gRNA sequence. sxcC941Y mutant flies were generated by microinjection of vas-Cas9 embryos (BL51323) (Rainbow Transgenic Flies, Inc) with CRISPR reagents generated in-house, backcrossed to a w1118 (VDRC60000) background and the mutated chromosome was balanced over Curly of Oster (CyO). Diagnostic digests were carried out on the resulting flies to first confirm the loss of the restriction site followed by sequencing of the PCR product. The correctness of the mutation was also confirmed through sequencing of the full-length sxc mRNA. Sequences of the oligonucleotides used here are listed in Table 1.
Fly stocks and maintenance
Request a detailed protocolStocks were maintained on a 12:12 light dark cycle at 25°C on Nutri-Fly Bloomington Formulation fly food. Previously described sxcK872M (Mariappa et al., 2018), sxcN595K (Pravata et al., 2019), and sxcH596F (Fenckova et al., 2022) mutant flies (2018) were used. Previously described OgaKO flies (Muha et al., 2020) were used to generate sxcC941Y;OgaKO and sxcK872M;OgaKO stocks. The homozygous lethal sxcK872M chromosome was balanced over a CyO chromosome carrying a GFP reporter (CyO, P{ActGFP.w[-]}CC2, BL9325). An isogenic w1118 (VRDC60000) background strain was used as a control genetic background. To overexpress wild type sxc in an sxcK872M background, sxcK872M/CyO(GFP);mhc-Gal4 (generated using the w[*]; P{w[+mC]=Mhc-GAL4.K}2/TM3, Sb[1] line; BL55133) or sxcK872M/CyO(GFP);elavL3-Gal4 (generated using the P{GAL4-elav.L}CG16779[3] line; RRID:BDSC_8760) were crossed with sxcK872M/CyO(GFP);UAS:sxc-HA (generated using the previously described UAS:sxc-HA line; Mariappa et al., 2015). To knock down sxc in neurons or glia, the sxc RNAi line VDRC110717 was used and 10 of either virgin VDRC110717 or VRDC60000 females were crossed with five P{w[+mC]=GAL4elav.L}2/CyO (BL8765), p[w[mC]:repo-GAL4]/TM6b (kind gift from Leeanne McGurk), or VRDC60000 males and allowed to lay embryos for 5 days.
Drosophila tissue lysis and western blotting
Request a detailed protocolFor immunoblotting of adult head lysates, flies raised as described previously were anaesthetised with CO2 and an equal number of 3–5-day-old male and female flies were snap frozen in liquid nitrogen. Heads were then severed from bodies by vortexing flies twice and collected using a paintbrush. To collect larval and embryonic lysates, homozygous 3–5-day-old females and males were allowed to lay embryos for 4 hr and 2 hr, respectively, on apple juice agar plates supplemented with yeast paste. For recessive lethal lines, heterozygous parents were crossed in the same manner. Embryos were collected 14 hr later and snap frozen on dry ice. For recessive lethal genotypes, homozygous embryos were collected based on the absence of a GFP fluorescent CyO balancer chromosome. For larval tissues, 24 hr after embryo collection, sxc mutant homozygous first-instar larvae were collected into vials containing Nutri-Fly Bloomington Formulation fly food at a density of 25 larvae per vial and aged to the wandering third-instar stage, when they were snap frozen on dry ice. For experiments in which specificity of the O-GlcNAc antibody was tested by prior incubation with Clostridium perfringens OGA CpOGA, heads were lysed in modified RIPA buffer to accommodate the pH optimum of CpOGA (Rao et al., 2006) (150 mM NaCl, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, 25 mM citric acid pH 5.5) supplemented with a protease inhibitor cocktail (1 M benzamidine, 0.2 mM PMSF, 5 mM leupeptin). To validate specificity of O-GlcNAc detection, lysates were split with one group incubated with 2.5 μM GST tagged CpOGA to remove O-GlcNAc while the experimental group was incubated with 1 μM GlcNAcstatin G. Lysates were then incubated for 2 hr at room temperature, agitated at 300 RPM using a thermomixer (Eppendorf thermomixer comfort). The reaction was stopped by heating to 95°C with NuPAGE LDS Sample Buffer with 50 mM TCEP to a 1× concentration. Otherwise, collected tissues were lysed in 50 mM Tris- HCl (pH 8.0), 150 mM NaCl, 1% Triton-X 100, 4 mM sodium pyrophosphate, 5 mM NaF, 2 mM sodium orthovanadate, 1 mM EDTA, supplemented 1:100 with a protease inhibitor cocktail (1 M benzamidine, 0.2 mM PMSF, 5 mM leupeptin) and 1.5× NuPAGE LDS Sample Buffer with 50 mM TCEP. Protein concentration was estimated using a Pierce 660 assay (Thermo Scientific) supplemented with ionic detergent compatibility reagent (Thermo Scientific). 30 μg of protein per group were separated by gel electrophoresis (NuPage 4–12% Bis-Tris, Invitrogen) and transferred onto a nitrocellulose membrane (Amersham Protran 0.2 μm). Membranes were developed with the following primary antibodies: mouse anti-O-GlcNAc (RL2, 1:1000, Novus), rabbit anti-OGT (1:1000, Abcam, ab-96718), and rabbit anti-actin (1:5000, Sigma, A2066) and the following secondary antibodies: goat anti-mouse IgG 800 and donkey anti-rabbit IgG 680 infrared dye conjugated secondary antibodies (LI-COR, 1: 10,000). Western blots were analysed using Image Studio Lite.
Thiamet G feeding
Request a detailed protocolThiamet G (SantaCruz, sc-224307) was dissolved in PBS to a stock concentration of 100 mM. This stock was mixed with Drosophila instant food (Flystuff Nutri-Fly Food, Instant Formulation) to appropriate concentrations, to avoid heating Thiamet G. For experiments with adult flies, 1–3-day-old flies (males and females in equal proportion) were placed on food for 72 hr prior to snap freezing in liquid nitrogen. For larval feeding experiments, ten 0–3-day-old females were crossed with four males and allowed to lay embryos for 2 days. Wandering third-instar larvae were snap frozen on dry ice and lysed.
Effects of the addition of Thiamet G to food on adult feeding behaviour were assayed similarly to Wong et al., 2009. To age match flies, freshly eclosed adults were placed on standard food as described in ‘Fly stocks and maintenance’ for 2 days. Males were then transferred to vials with 1% agarose for 18 hr, to starve flies and later induce feeding. After starvation, flies were placed in either vehicle control vials (0.86% agarose, 5 mM sucrose, 3% PBS, 0.2% blue dye no. 1 [Sigma 861146]) or Thiamet G containing vials (0.86% agarose, 5 mM sucrose, 3% PBS, 3 mM Thiamet G, 0.2% blue dye no. 1) for 30 min. Ten flies per replicate were then ground with a pestle in 50 μL of water and centrifuged at 17,000 RCF for 15 min to remove debris. 35 μL of supernatant was then collected and absorbance at 625 nm was measured (NanoDrop One, Thermo Fisher Scientific).
NMJ immunohistochemistry
Request a detailed protocolThe NMJ assay was performed as in Nijhof et al., 2016. Larvae for this assay were obtained as described above. Male wandering third-instar larvae were dissected using the ‘open book’ technique Brent et al., 2009 followed by immediate fixation in 3.7% paraformaldehyde in phosphate buffered saline (pH 7.5) (PBS) for 25 min. Fixed larvae were either stored in PBS at 4°C for up to 48 hr or immediately processed further. Larval preparations were blocked using 5% normal donkey serum (NDS) in PBS and Triton-X (0.3%, PBST) for 2 hr at room temperature, followed by immunostaining using mouse anti-Discs Large 1 (1:25, Developmental Studies Hybridoma Bank, RRID:AB_528203) and goat anti-HRP conjugated to Alexa Fluor 647 (1:400, Jackson ImmunoResearch, RRID:AB_2338967) in 5% NDS PBST overnight at 4°C. Sections were washed four times for 10 min in PBST (0.5%), followed by 4 hr incubation with donkey anti-mouse Alexa Fluor 488 (1:400) in 5% NDS PBST at room temperature. Sections were washed as for primary antibodies, rinsed in PBS, and mounted using Dako Fluorescence Mounting Medium (Agilent). Images of type 1b NMJs of muscle 4 were obtained using either a Zeiss 710 or 980 confocal microscope using a ×10 objective (EC Plan Neofluar 0.3) (voxel size: 0.69 × 0.69 × 6.22 μm) for muscle area measurements and using a ×63 objective (Plan Apochromat 1.4 oil) to image individual junctions (voxel size: 0.196 × 0.196 × 0.91 μm). Image size for the former was 2048 × 2048 pixels and 688 × 688 for the latter. Both channels were acquired simultaneously. NMJ parameters were scored using a semi-automated macro by a researcher blind to the conditions (Neuromuscular Junction Morphometrics; Nijhof et al., 2016) with poorly annotated or damaged NMJs excluded from further analysis. Muscle area was manually measured using the polygon selection tool in ImageJ. Statistical analysis was performed on mean values for individual larvae for which three or more NMJs were accurately annotated.
Drosophila activity monitor
Request a detailed protocolDrosophila activity was recorded using Trikinetics DAM2 monitors. 1–3-day-old male flies were used for all experiments. Briefly, male flies were anaesthetised using CO2 and placed in DAM vials with Nutri-Fly Bloomington Formulation food. Experiments were performed at 25°C on a 12 hr:12 hr light:dark cycle, data were recorded for 3 days, after 2 days of acclimatisation. For TMG rescue experiments, food was prepared as described in ‘Thiamet G feeding’ and data were recorded 72 hr after placing flies on supplemented food. Data were pre-processed using DAMFileScan113 software and Sleep and Circadian Analysis MATLAB Program (SCAMP) (Donelson et al., 2012). Flies that ceased to move during the experimental window were presumed dead and excluded. For analysis of number of bouts longer than 2 hr, the raw output from the DAM system was analysed in R using the Rethomics packages (Geissmann et al., 2019).
Scutellar bristle assay
Request a detailed protocolTo assay scutellar bristle number, 8–10 young homozygous virgin females were mated with three males and allowed to lay embryos for 3 days to prevent overcrowding of larvae. Eclosed offspring were immobilised using CO2 and scutellar bristles were counted using a Motic SMZ-161 microscope.
Western blot intensity profile
Request a detailed protocolIntensity of O-GlcNAc immunoreactivity was calibrated to estimated molecular weight plotted using custom Python code (available at GitHub, copy archived at Czajewski, 2024). Briefly, images were imported using the PIL library (Umesh, 2012), converted to NumPy arrays (Harris et al., 2020), and molecular weight markers were identified as intensity peaks in a user-defined x-coordinate column of pixels. The SciPy (Virtanen et al., 2020) library was then used to fit a curve to identified molecular weight markers to infer molecular weights at y-pixel coordinates. This was then used to calibrate the x-axis for plotting (using the matplotlib library; Hunter, 2007) the relative intensity of immunolabelling across genotypes and conditions based on user defined x pixel coordinates defining protein lanes, normalised to loading controls.
Statistical analyses
Request a detailed protocolAll statistical analyses were performed in R (version 4.0.3). Data that satisfied assumptions regarding homoscedasticity and normality were analysed with a one-way ANOVA followed by Tukey’s HSD with Bonferroni correction. Otherwise, data were analysed using a Kruskal–Wallis rank sum test followed by pairwise comparisons using Wilcoxon rank sum test with continuity correction and p value adjustment using the Bonferroni method. Sleep architecture phenotypes which were analysed separately for data collected during the day and night were analysed by two-way ANOVA (sleep bout number) or by a Kruskal–Wallis rank sum test performed separately on the two time periods (mean sleep bout duration), followed by post hoc testing as above. One outlier was removed from analysis (sxcN595K OGT and O-GlcNAcylation quantification), based on the criteria of falling more than 1.5 interquartile range beyond the 75 percentile. To balance the removal of this outlier, the minimum for this group was also removed.
Materials availability statement
Request a detailed protocolAll materials are available upon request.
Data availability
Code used to generate Figure 2 - Supplement 1 A and C is deposited in GitHub (copy archived at Czajewski, 2024). Upon publication, information regarding novel genotypes and phenotypes will be deposited in FlyBase. Newly generated genotypes are available upon request.
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Article and author information
Author details
Funding
Wellcome Trust (110061)
- Daan MF van Aalten
Novo Nordisk Foundation (NNF21OC0065969)
- Daan MF van Aalten
National Centre for the Replacement Refinement and Reduction of Animals in Research (T001682)
- Ignacy Czajewski
Villum Fonden (Villum Investigator 00054496)
- Daan MF van Aalten
The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication. For the purpose of Open Access, the authors have applied a CC BY public copyright license to any Author Accepted Manuscript version arising from this submission.
Acknowledgements
This work was funded by a Wellcome Trust Investigator Award (110061), a Novo Nordisk Foundation Laureate award (NNF21OC0065969), and a Villum Fonden Investigator (00054496) to DMFvA, and a PhD studentship from the National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs, award number T001682).
Supported in part by the Danish Research Institute of Translational Neuroscience – DANDRITE of the Nordic-EMBL Partnership for Molecular Medicine and Lundbeckfonden. We also thank Leeanne McGurk and Jens Januschke for their feedback as well as past and current members of our laboratory for their input, including Hannah Smith, Marta Murray, Veronica Pravata, and Conor Mitchell.
Copyright
© 2024, Czajewski et al.
This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.
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Further reading
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- Chromosomes and Gene Expression
- Developmental Biology
Transcription often occurs in bursts as gene promoters switch stochastically between active and inactive states. Enhancers can dictate transcriptional activity in animal development through the modulation of burst frequency, duration, or amplitude. Previous studies observed that different enhancers can achieve a wide range of transcriptional outputs through the same strategies of bursting control. For example, in Berrocal et al., 2020, we showed that despite responding to different transcription factors, all even-skipped enhancers increase transcription by upregulating burst frequency and amplitude while burst duration remains largely constant. These shared bursting strategies suggest that a unified molecular mechanism constraints how enhancers modulate transcriptional output. Alternatively, different enhancers could have converged on the same bursting control strategy because of natural selection favoring one of these particular strategies. To distinguish between these two scenarios, we compared transcriptional bursting between endogenous and ectopic gene expression patterns. Because enhancers act under different regulatory inputs in ectopic patterns, dissimilar bursting control strategies between endogenous and ectopic patterns would suggest that enhancers adapted their bursting strategies to their trans-regulatory environment. Here, we generated ectopic even-skipped transcription patterns in fruit fly embryos and discovered that bursting strategies remain consistent in endogenous and ectopic even-skipped expression. These results provide evidence for a unified molecular mechanism shaping even-skipped bursting strategies and serve as a starting point to uncover the realm of strategies employed by other enhancers.
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- Developmental Biology
Maternal obesity has deleterious effects on the process of establishing oocyte DNA methylation; yet the underlying mechanisms remain unclear. Here, we found that maternal obesity disrupted the genomic methylation of oocytes using a high-fat diet (HFD) induced mouse model, at least a part of which was transmitted to the F2 oocytes and livers via females. We further examined the metabolome of serum and found that the serum concentration of melatonin was reduced. Exogenous melatonin treatment significantly reduced the hyper-methylation of HFD oocytes, and the increased expression of DNMT3a and DNMT1 in HFD oocytes was also decreased. These suggest that melatonin may play a key role in the disrupted genomic methylation in the oocytes of obese mice. To address how melatonin regulates the expression of DNMTs, the function of melatonin was inhibited or activated upon oocytes. Results revealed that melatonin may regulate the expression of DNMTs via the cAMP/PKA/CREB pathway. These results suggest that maternal obesity induces genomic methylation alterations in oocytes, which can be partly transmitted to F2 in females, and that melatonin is involved in regulating the hyper-methylation of HFD oocytes by increasing the expression of DNMTs via the cAMP/PKA/CREB pathway.