Browse our latest Computational and Systems Biology articles

Page 53 of 128
    1. Computational and Systems Biology
    2. Physics of Living Systems

    A biophysical threshold for biofilm formation

    Jenna A Moore-Ott, Selena Chiu ... Sujit S Datta
    A biophysical model of the process by which bacteria transition from the motile planktonic state to the immobilized biofilm state yields testable predictions in terms of two dimensionless parameters, one describing nutrient availability and the other describing cellular dispersal.
    1. Computational and Systems Biology
    2. Physics of Living Systems

    Bacteria: To biofilm or not to biofilm

    Shravan Pradeep, Paulo E Arratia
    A new model helps to predict under which conditions a species of bacteria will switch to a static lifestyle.
    Version of Record
    Insight
    1. Computational and Systems Biology

    Meta-Research: How parenthood contributes to gender gaps in academia

    Xiang Zheng, Haimiao Yuan, Chaoqun Ni
    Gender gaps in academic achievement are in fact "parenthood gender gaps", with mothers experiencing higher levels of work-family conflict, and receiving lower levels of partner support, than fathers.
    1. Computational and Systems Biology
    2. Stem Cells and Regenerative Medicine

    Cell Culture: Implementing robotics and artificial intelligence

    Sujith Sebastian
    An automated platform for cell culture combines robotics and artificial intelligence to optimize cell culture protocols and reliably produce specific cell types that could be used for regenerative medicine treatments.
    Version of Record
    Insight
    1. Computational and Systems Biology

    Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy

    Guillaume Ravel, Michel Bergmann ... Simon Labarthe
    A new mathematical method has been developed, implemented and validated for the analysis of time-lapse confocal laser scanning microscopy images to characterize the swimming behavior of bacterial swimmers moving in the exogenous matrix of pathogenic biofilms.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Cancer type classification using plasma cell-free RNAs derived from human and microbes

    Shanwen Chen, Yunfan Jin ... Pengyuan Wang
    Both human and microbe cell-free RNA features in plasma could distinguish tumors of different primary locations.
    1. Computational and Systems Biology
    2. Neuroscience

    Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows

    Olivia Eriksson, Upinder Singh Bhalla ... Jeanette Hellgren Kotaleski
    Increased usability and validity of neuroscience models, through FAIR workflows for the whole modeling process, including data and model management, parameter estimation, uncertainty quantification, and model analysis.
    1. Computational and Systems Biology
    2. Neuroscience

    Structural differences in adolescent brains can predict alcohol misuse

    Roshan Prakash Rane, Evert Ferdinand de Man ... IMAGEN consortium
    Structural differences in adolescent brains associated with binge drinking might be preceding the onset of such behavior, suggesting a reevaluation of studies of the effects of alcohol on the adolescent brain.
    1. Computational and Systems Biology
    2. Genetics and Genomics

    Genome-wide detection of imprinted differentially methylated regions using nanopore sequencing

    Vahid Akbari, Jean-Michel Garant ... Steven JM Jones
    A genome-wide map of human allele-specific methylation using long-read sequencing detects novel imprinted DNA methylation events and reveals large blocks of subtle parent-of-origin bias in DNA methylation with mutual exclusive allelic H3K36me3 and H3K27me3 histone modifications.
    1. Computational and Systems Biology
    2. Neuroscience

    Waveform detection by deep learning reveals multi-area spindles that are selectively modulated by memory load

    Maryam H Mofrad, Greydon Gilmore ... Lyle Muller
    A new computational approach for detecting sleep waveforms reveals that the 11–15 Hz sleep 'spindle', a neural rhythm implicated in memory consolidation, co-occurs widely across cortex much more often than previously thought.