Abstract

Cell proliferation and quiescence are intimately coordinated during metazoan development. Here, we adapt a cyclin-dependent kinase (CDK) sensor to uncouple these key events of the cell cycle in C. elegans and zebrafish through live-cell imaging. The CDK sensor consists of a fluorescently tagged CDK substrate that steadily translocates from the nucleus to the cytoplasm in response to increasing CDK activity and consequent sensor phosphorylation. We show that the CDK sensor can distinguish cycling cells in G1 from quiescent cells in G0, revealing a possible commitment point and a cryptic stochasticity in an otherwise invariant C. elegans cell lineage. Finally, we derive a predictive model of future proliferation behavior in C. elegans based on a snapshot of CDK activity in newly born cells. Thus, we introduce a live-cell imaging tool to facilitate in vivo studies of cell cycle control in a wide-range of developmental contexts.

Data availability

All data generated or analysed during this study are included in the manuscript and supporting files.

Article and author information

Author details

  1. Rebecca C Adikes

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  2. Abraham Q Kohrman

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook University, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-3726-1090
  3. Michael A Q Martinez

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1178-7139
  4. Nicholas J Palmisano

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  5. Jayson J Smith

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  6. Taylor N Medwig-Kinney

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-7989-3291
  7. Mingwei Min

    Chemistry and Biochemistry, University of Colorado-Boulder, Boulder, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-9050-5330
  8. Maria Danielle Sallee

    Biology, Stanford University, Stanford, United States
    Competing interests
    The authors declare that no competing interests exist.
  9. Ononnah B Ahmed

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  10. Nuri Kim

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  11. Simeiyun Liu

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  12. Robert D Morabito

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  13. Nicholas Weeks

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  14. Qinyun Zhao

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  15. Wan Zhang

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
  16. Jessica L Feldman

    Biology, Stanford University, Stanford, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-5210-5045
  17. Michalis Barkoulas

    Life Sciences, Imperial College London, London, United Kingdom
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1974-7668
  18. Ariel M Pani

    University of Virginia, Charlottesville, United States
    Competing interests
    The authors declare that no competing interests exist.
  19. Sabrina Leigh Spencer

    Biochemistry, University of Colorado-Boulder, Boulder, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-5798-3007
  20. Benjamin Louis Martin

    Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-5474-4492
  21. David Q Matus

    Biochemistry and Cell Biology, Stony Brook University, Stony Brook, United States
    For correspondence
    david.matus@stonybrook.edu
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-1570-5025

Funding

National Institutes of Health (1R01GM121597)

  • David Q Matus

National Institutes of Health (DP2GM1191136)

  • Sabrina Leigh Spencer

National Institutes of Health (DP2-CA238330)

  • Jessica L Feldman

American Cancer Society (RSG-18-008-01)

  • Sabrina Leigh Spencer

Pew Charitable Trusts

  • Sabrina Leigh Spencer

Boettcher Foundation

  • Sabrina Leigh Spencer

Searle Scholars Program (SSP-2016-1533)

  • Sabrina Leigh Spencer

National Institutes of Health (1K99GM13548901)

  • Maria Danielle Sallee

National Institutes of Health (1R01GM124282)

  • Benjamin Louis Martin

Damon Runyon Cancer Research Foundation (DRR-47-17)

  • Benjamin Louis Martin
  • David Q Matus

National Science Foundation (IOS 1452928)

  • Benjamin Louis Martin

Pershing Square Sohn Cancer Research Alliance

  • Benjamin Louis Martin

National Institutes of Health (1F32133131)

  • Rebecca C Adikes

National Institutes of Health (F31GM128319)

  • Abraham Q Kohrman

American Cancer Society (132969-PF-18-226-01-CSM)

  • Nicholas J Palmisano

National Institutes of Health (F31HD1000091)

  • Taylor N Medwig-Kinney

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Reviewing Editor

  1. Margot L K Williams, Baylor College of Medicine, United States

Ethics

Animal experimentation: This study was performed in strict accordance with the recommendations in the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health. All of the animals were handled according to approved institutional animal care and use committee (IACUC) protocols (#2012-1932 - R2 - 1.15.21- FI) of Stony Brook University. The protocol was approved by the Office of Research Compliance of Stony Brook University.

Version history

  1. Received: September 18, 2020
  2. Accepted: December 21, 2020
  3. Accepted Manuscript published: December 22, 2020 (version 1)
  4. Version of Record published: February 12, 2021 (version 2)

Copyright

© 2020, Adikes et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

Metrics

  • 4,604
    views
  • 684
    downloads
  • 37
    citations

Views, downloads and citations are aggregated across all versions of this paper published by eLife.

Download links

A two-part list of links to download the article, or parts of the article, in various formats.

Downloads (link to download the article as PDF)

Open citations (links to open the citations from this article in various online reference manager services)

Cite this article (links to download the citations from this article in formats compatible with various reference manager tools)

  1. Rebecca C Adikes
  2. Abraham Q Kohrman
  3. Michael A Q Martinez
  4. Nicholas J Palmisano
  5. Jayson J Smith
  6. Taylor N Medwig-Kinney
  7. Mingwei Min
  8. Maria Danielle Sallee
  9. Ononnah B Ahmed
  10. Nuri Kim
  11. Simeiyun Liu
  12. Robert D Morabito
  13. Nicholas Weeks
  14. Qinyun Zhao
  15. Wan Zhang
  16. Jessica L Feldman
  17. Michalis Barkoulas
  18. Ariel M Pani
  19. Sabrina Leigh Spencer
  20. Benjamin Louis Martin
  21. David Q Matus
(2020)
Visualizing the metazoan proliferation-quiescence decision in vivo
eLife 9:e63265.
https://doi.org/10.7554/eLife.63265

Share this article

https://doi.org/10.7554/eLife.63265

Further reading

    1. Biochemistry and Chemical Biology
    2. Cell Biology
    Natalia Dolgova, Eva-Maria E Uhlemann ... Oleg Y Dmitriev
    Research Article Updated

    Mediator of ERBB2-driven cell motility 1 (MEMO1) is an evolutionary conserved protein implicated in many biological processes; however, its primary molecular function remains unknown. Importantly, MEMO1 is overexpressed in many types of cancer and was shown to modulate breast cancer metastasis through altered cell motility. To better understand the function of MEMO1 in cancer cells, we analyzed genetic interactions of MEMO1 using gene essentiality data from 1028 cancer cell lines and found multiple iron-related genes exhibiting genetic relationships with MEMO1. We experimentally confirmed several interactions between MEMO1 and iron-related proteins in living cells, most notably, transferrin receptor 2 (TFR2), mitoferrin-2 (SLC25A28), and the global iron response regulator IRP1 (ACO1). These interactions indicate that cells with high-MEMO1 expression levels are hypersensitive to the disruptions in iron distribution. Our data also indicate that MEMO1 is involved in ferroptosis and is linked to iron supply to mitochondria. We have found that purified MEMO1 binds iron with high affinity under redox conditions mimicking intracellular environment and solved MEMO1 structures in complex with iron and copper. Our work reveals that the iron coordination mode in MEMO1 is very similar to that of iron-containing extradiol dioxygenases, which also display a similar structural fold. We conclude that MEMO1 is an iron-binding protein that modulates iron homeostasis in cancer cells.

    1. Cell Biology
    Yoko Nakai-Futatsugi, Jianshi Jin ... Masayo Takahashi
    Research Article

    Retinal pigment epithelium (RPE) cells show heterogeneous levels of pigmentation when cultured in vitro. To know whether their color in appearance is correlated with the function of the RPE, we analyzed the color intensities of human-induced pluripotent stem cell-derived RPE cells (iPSC-RPE) together with the gene expression profile at the single-cell level. For this purpose, we utilized our recent invention, Automated Live imaging and cell Picking System (ALPS), which enabled photographing each cell before RNA-sequencing analysis to profile the gene expression of each cell. While our iPSC-RPE were categorized into four clusters by gene expression, the color intensity of iPSC-RPE did not project any specific gene expression profiles. We reasoned this by less correlation between the actual color and the gene expressions that directly define the level of pigmentation, from which we hypothesized the color of RPE cells may be a temporal condition not strongly indicating the functional characteristics of the RPE.