Phosphate starvation signaling increases mitochondrial membrane potential through respiration-independent mechanisms

  1. Yeyun Ouyang
  2. Mi-Young Jeong
  3. Corey N Cunningham
  4. Jordan A Berg
  5. Ashish G Toshniwal
  6. Casey E Hughes
  7. Kristina Seiler
  8. Jonathan G Van Vranken
  9. Ahmad A Cluntun
  10. Geanette Lam
  11. Jacob M Winter
  12. Emel Akdoǧan
  13. Katja K Dove
  14. Sara M Nowinski
  15. Matthew West
  16. Greg Odorizzi
  17. Steven P Gygi
  18. Cory D Dunn
  19. Dennis R Winge
  20. Jared Rutter  Is a corresponding author
  1. University of Utah, United States
  2. Harvard University, United States
  3. University of California, Davis, United States
  4. Van Andel Institute, United States
  5. University of Colorado Boulder, United States
  6. University of Helsinki, Finland

Abstract

Mitochondrial membrane potential directly powers many critical functions of mitochondria, including ATP production, mitochondrial protein import, and metabolite transport. Its loss is a cardinal feature of aging and mitochondrial diseases, and cells closely monitor membrane potential as an indicator of mitochondrial health. Given its central importance, it is logical that cells would modulate mitochondrial membrane potential in response to demand and environmental cues, but there has been little exploration of this question. We report that loss of the Sit4 protein phosphatase in yeast increases mitochondrial membrane potential, both through inducing the electron transport chain and the phosphate starvation response. Indeed, a similarly elevated mitochondrial membrane potential is also elicited simply by phosphate starvation or by abrogation of the Pho85-dependent phosphate sensing pathway. This enhanced membrane potential is primarily driven by an unexpected activity of the ADP/ATP carrier. We also demonstrate that this connection between phosphate limitation and enhancement of mitochondrial membrane potential is observed in primary and immortalized mammalian cells as well as in Drosophila. These data suggest that mitochondrial membrane potential is subject to environmental stimuli and intracellular signaling regulation and raise the possibility for therapeutic enhancement of mitochondrial function even in defective mitochondria.

Data availability

The mass spectrometry data have been deposited to the ProteomeXchange Consortium with the data set identifier PXD037405. RNA sequencing data have been deposited to the GEO Omnibus Repository with data set identifiers GSE151606, GSE212790, and GSE209726. Code for high-throughput dataset analysis is archived on GitHub at https://github.com/j-berg/ouyang_analysis_2022, and at Zenodo at https://doi.org/10.5281/zenodo.7212729.

The following data sets were generated
The following previously published data sets were used

Article and author information

Author details

  1. Yeyun Ouyang

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  2. Mi-Young Jeong

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  3. Corey N Cunningham

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  4. Jordan A Berg

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  5. Ashish G Toshniwal

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  6. Casey E Hughes

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  7. Kristina Seiler

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  8. Jonathan G Van Vranken

    Department of Cell Biology, Harvard University, Boston, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-8931-852X
  9. Ahmad A Cluntun

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-7612-8375
  10. Geanette Lam

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  11. Jacob M Winter

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  12. Emel Akdoǧan

    Department of Microbiology and Molecular Genetics, University of California, Davis, Davis, United States
    Competing interests
    The authors declare that no competing interests exist.
  13. Katja K Dove

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
  14. Sara M Nowinski

    Department of Metabolism and Nutritional Programming, Van Andel Institute, Grand Rapids, United States
    Competing interests
    The authors declare that no competing interests exist.
  15. Matthew West

    Department of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, United States
    Competing interests
    The authors declare that no competing interests exist.
  16. Greg Odorizzi

    Department of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-1143-1098
  17. Steven P Gygi

    Department of Cell Biology, Harvard University, Boston, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0001-7626-0034
  18. Cory D Dunn

    Institute of Biotechnology, University of Helsinki, Helsinki, Finland
    Competing interests
    The authors declare that no competing interests exist.
  19. Dennis R Winge

    Department of Medicine, University of Utah, Salt Lake City, United States
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0003-1160-1189
  20. Jared Rutter

    Department of Biochemistry, University of Utah, Salt Lake City, United States
    For correspondence
    rutter@biochem.utah.edu
    Competing interests
    The authors declare that no competing interests exist.
    ORCID icon "This ORCID iD identifies the author of this article:" 0000-0002-2710-9765

Funding

National Institutes of Health (1F32GM140525)

  • Corey N Cunningham

National Institutes of Health (1T32DK11096601)

  • Jordan A Berg

National Institutes of Health (1F99CA253744)

  • Jordan A Berg

National Institutes of Health (1F30CA243440-01A1)

  • Jacob M Winter

National Institutes of Health (1K99HL168312-01)

  • Ahmad A Cluntun

National Institutes of Health (R01GM110755)

  • Dennis R Winge

National Institutes of Health (R35GM131854)

  • Jared Rutter

Damon Runyon Cancer Research Foundation (DRG-2359-19)

  • Jonathan G Van Vranken

Howard Hughes Medical Institute

  • Jared Rutter

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.

Copyright

© 2024, Ouyang et al.

This article is distributed under the terms of the Creative Commons Attribution License permitting unrestricted use and redistribution provided that the original author and source are credited.

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  1. Yeyun Ouyang
  2. Mi-Young Jeong
  3. Corey N Cunningham
  4. Jordan A Berg
  5. Ashish G Toshniwal
  6. Casey E Hughes
  7. Kristina Seiler
  8. Jonathan G Van Vranken
  9. Ahmad A Cluntun
  10. Geanette Lam
  11. Jacob M Winter
  12. Emel Akdoǧan
  13. Katja K Dove
  14. Sara M Nowinski
  15. Matthew West
  16. Greg Odorizzi
  17. Steven P Gygi
  18. Cory D Dunn
  19. Dennis R Winge
  20. Jared Rutter
(2024)
Phosphate starvation signaling increases mitochondrial membrane potential through respiration-independent mechanisms
eLife 13:e84282.
https://doi.org/10.7554/eLife.84282

Share this article

https://doi.org/10.7554/eLife.84282

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