Figure 3—figure supplement 2. | Admixture into and within sub-Saharan Africa

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Admixture into and within sub-Saharan Africa

Figure 3—figure supplement 2.

Affiliation details

Wellcome Trust Centre for Human Genetics, United Kingdom; Wellcome Trust Sanger Institute, United Kingdom; Medical Research Council Unit, The Gambia; Royal Victoria Teaching Hospital, The Gambia; Centre National de Recherche et de Formation sur le Paludisme, Burkina Faso; University of Rome La Sapienza, Italy; Navrongo Health Research Centre, Ghana; Komfo Anokye Teaching Hospital, Ghana; University of Buea, Cameroon; KEMRI-Wellcome Trust Research Programme, Kenya; Kilimanjaro Christian Medical College, Tanzania; London School of Hygiene and Tropical Medicine, United Kingdom; College of Medicine, University of Malawi, Malawi; University of Bamako, Mali
Figure 3—figure supplement 2.
Download figureOpen in new tabFigure 3—figure supplement 2. Comparison of weighted LD amplitude scores across all African ethnic groups.

For a given test population we computed the ALDER amplitude (y-axis intercept) using the test population and every other population as the second reference. We then ranked the amplitudes across a given test population: populations who gave the top-ranked (i.e. largest) amplitude are in green, with those beneath a rank 15 shown in grey. This analysis shows that for many populations the reference populations giving the largest amplitudes (i.e. have the highest rank) are often non-African groups.

DOI: http://dx.doi.org/10.7554/eLife.15266.020